Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0203 ATGAAACAGGAGTGGCCAAGTACGCTTTCAAAAACCAGGGTAAATGTAATTGCAGAAGGTTCAGATTCAAGCTGCATCACTTGCCCATTCCCTGCGAATGGATGCAGTGGTCATGGAAGGAGTTCAACCTCAAAATTCAAAGGTGTTGTGCCTCAGCAGAATGGTCATTGGGGTGCACAAATTTATGCCAATCACCAGCGTATTTGGCTTGGGACATTCAAGTCTGAGAATGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGGAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAATTCACAATAGAAGAGCCGAACTTCCAGAAACTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACAGAACCAAATTTTCCGAGTACTTGAGGGATCGTTCCGAAAGGGCACAAACTTCAGCTGGCCTCTCTGCAGCAAAGATGCATAGCAATGAAGGGACGTCTATTAAGCAACTCTTTCAGAAAGAGCTAACACCAAGCGATGTTGGTAAGTTGAACAGATTGGTGATCCCAAAGAAATATGCTGTTAAATACTTCCCTCACATATCAGCCAACACAACAGAAAATGTGGAACGTGTCGATGATGATCGCAACGTGCAGCTAGTATTTTTTGATAAAATGATGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTGTTTACTCGAGGTTGGAATCGATTTGTGAAGGAAAAACAACTGAAAGCGAACGACACAATAGCTTTCTACGTGTGTGAAGCAGTAAAGGCAAGCGATGCTAAAACTACATTCTGTGTGGTGGATGTTAAAAATCGTAAGAATGGTGGCAACTCGGTTGAGAATGAAATGACAAGTAGTGAAATGCAGCTAGATTTCGGGTATGTACAAGTCGAGGAATTGGCGTCGGCTAAGCATGTAGATGATAAACTAGAAGATGATGCTGAAGCCAAGGGCTTCAAACTATTTGGAGTGCATATTAAGTGA 1020 42.16 MKQEWPSTLSKTRVNVIAEGSDSSCITCPFPANGCSGHGRSSTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQKLYTTEALLNMLKDGSYRTKFSEYLRDRSERAQTSAGLSAAKMHSNEGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISANTTENVERVDDDRNVQLVFFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYVCEAVKASDAKTTFCVVDVKNRKNGGNSVENEMTSSEMQLDFGYVQVEELASAKHVDDKLEDDAEAKGFKLFGVHIK 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1439955 1440974 + Lag0033731.1 Lac3g0203 600625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0203 339 ProSiteProfiles AP2/ERF domain profile. 45 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0203 339 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 44 337 IPR044800 GO:0003700(InterPro)
Lac3g0203 339 ProSiteProfiles B3 DNA-binding domain profile. 167 282 IPR003340 GO:0003677(InterPro)
Lac3g0203 339 Gene3D AP2/ERF domain 44 101 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0203 339 SUPERFAMILY DNA-binding pseudobarrel domain 166 264 IPR015300 -
Lac3g0203 339 CDD B3_DNA 166 262 IPR003340 GO:0003677(InterPro)
Lac3g0203 339 FunFam AP2 domain-containing protein RAP2.8 44 101 - -
Lac3g0203 339 CDD AP2 44 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0203 339 Gene3D - 162 292 IPR015300 -
Lac3g0203 339 SMART rav1_2 45 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0203 339 SMART B3_2 167 282 IPR003340 GO:0003677(InterPro)
Lac3g0203 339 Pfam B3 DNA binding domain 167 265 IPR003340 GO:0003677(InterPro)
Lac3g0203 339 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0203 Lac-Chr3:1439955 Lac3g1291 Lac-Chr3:11145011 2.90E-84 dispersed
Lac3g0203 Lac-Chr3:1439955 Lac8g1280 Lac-Chr8:27917084 2.00E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23555 PF02362 B3 3.20E-24 CL0405 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0203 K09287 - csv:101212246 579.711