Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac3g0204 | ATGGCGGAGAAGGACAGAGACGGTCATTCTGGTGTGCTCCATGGGAAGTATGAGTTAGGTCGGCTTCTAGGGCATGGTACTTTTGCGAAGGTTTACCATGCCCGGAACTTGCAGACGGGAACGAGCATGGCGATGAAGGTGGTTGGGAAGGAGAAGGTCATAAAGGTAGGCATGATGGAGCAGATCAAGAGGGAGATCTCTGTGATGAAGATGGTGAAGCATCCGAATATTGTCGAGCTTCATGAGGTTATGGCGAGCAAATCGAAGATCTATTTCGCGATGGAGCTTGTTCGAGGCGGGGAACTGTTCTCCAAAATTTCAAGAGGTCGATTGAGAGAAGATGTGGCTAGAGTTTACTTTCAGCAGCTTATTTCTGCGATCGATTTTGTCACAGTCGGGGGTTTACCATCGGACCTCAAACCGGAGAATCTTCTACTCGACGATGACGGAAATCTTAAGGTAACTGATTTCGGACTCAGCGCATTTTCCGAGCACTTGAAACAGGATGGATTGTTGCACACAACTTGTGGTACTCCGGCGTACGTTGCGCCGGAAGTTATCGGAAAGAAGGGATACAACGGCGCCAAAGCCGATCTATGGTCATGCGGAGTCATCCTTTACGTTCTTCTCGCCGGATTTCTCCCATTTCAGGACGACAACATTGTGGCCATGTACAGGAAGATTTACAGAGGAGATTTCAGGTGCCCGCCGTGGTTCTCACCAGAAGCCCGTCGACTCGTCACCAAACTCCTCGATCCAAATCCGAGCACCAGAATCACAACTTCGAAGATCATGGAATCCTCCTGGTTCAGGAAATCCGTACCGAGAACTGTGATGACAAAAGAGGAGCAGGAATTCGACGAGAGCAACGAGAAATTGAAGCAGTCGGAGACGCTAAATGCCTTCCATATAATTTCATTATCAGAAGGGTTCGATTTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAAGAGAAAGAGGAGCTGAGATTGCGACGACCAGGCCGGCGAGCACGTCAAAAAGAGCGAATCGAGGGTCAGATTGCAAGGCCAAGAGAGCGGAAGAAAGGGAAACTAGCGGTGGCGGCGGAGATCTTCGCCGTAACGCCGTCGTTTCTGGTGGTGGAGGTGAAGAAAGATCACGGCGACACGTTAGAATACAACCAATTCTGCAGCAAAGAGCTCCGGCCGGCGCTCAAAGACATTGTCTGGACATCACCACCAGACAACTCCATGCCGGCTTGA | 1242 | 50.4 | MAEKDRDGHSGVLHGKYELGRLLGHGTFAKVYHARNLQTGTSMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKISRGRLREDVARVYFQQLISAIDFVTVGGLPSDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYNGAKADLWSCGVILYVLLAGFLPFQDDNIVAMYRKIYRGDFRCPPWFSPEARRLVTKLLDPNPSTRITTSKIMESSWFRKSVPRTVMTKEEQEFDESNEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRLRRPGRRARQKERIEGQIARPRERKKGKLAVAAEIFAVTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWTSPPDNSMPA | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1447243 | 1448530 | - | Lag0033732.1 | Lac3g0204 | 600626 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac3g0204 | 413 | ProSitePatterns | Protein kinases ATP-binding region signature. | 23 | 50 | IPR017441 | GO:0005524(InterPro) | |
Lac3g0204 | 413 | Gene3D | Kinase associated domain 1, KA1 | 331 | 404 | - | - | |
Lac3g0204 | 413 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 9 | 398 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Lac3g0204 | 413 | ProSiteProfiles | Protein kinase domain profile. | 17 | 270 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac3g0204 | 413 | SUPERFAMILY | Protein kinase-like (PK-like) | 13 | 286 | IPR011009 | - | |
Lac3g0204 | 413 | Gene3D | Transferase(Phosphotransferase) domain 1 | 10 | 330 | - | - | |
Lac3g0204 | 413 | Pfam | NAF domain | 297 | 322 | IPR004041 | GO:0007165(InterPro) | |
Lac3g0204 | 413 | ProSiteProfiles | NAF domain profile. | 294 | 318 | IPR018451 | GO:0007165(InterPro) | |
Lac3g0204 | 413 | Coils | Coil | 279 | 299 | - | - | |
Lac3g0204 | 413 | FunFam | Non-specific serine/threonine protein kinase | 11 | 304 | - | - | |
Lac3g0204 | 413 | SMART | serkin_6 | 17 | 270 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac3g0204 | 413 | FunFam | Non-specific serine/threonine protein kinase | 9 | 96 | - | - | |
Lac3g0204 | 413 | Pfam | Protein kinase domain | 17 | 270 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac3g0204 | 413 | CDD | CIPK_C | 300 | 399 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac3g0204 | Lac-Chr3:1447243 | Lac9g2337 | Lac-Chr9:42681407 | 1.00E-120 | dispersed | |
Lac1g3263 | Lac-Chr1:52479790 | Lac3g0204 | Lac-Chr3:1447243 | 2.00E-60 | transposed | |
Lac4g2822 | Lac-Chr4:46840634 | Lac3g0204 | Lac-Chr3:1447243 | 3.20E-14 | transposed | |
Lac6g2847 | Lac-Chr6:46079680 | Lac3g0204 | Lac-Chr3:1447243 | 1.10E-184 | transposed | |
Lac2g0548 | Lac-Chr2:4094340 | Lac3g0204 | Lac-Chr3:1447243 | 4.00E-126 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86049 | PF00069 | Pkinase | 2.20E-63 | CL0016 | Lac | PK |
Pathway information
