Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0204 ATGGCGGAGAAGGACAGAGACGGTCATTCTGGTGTGCTCCATGGGAAGTATGAGTTAGGTCGGCTTCTAGGGCATGGTACTTTTGCGAAGGTTTACCATGCCCGGAACTTGCAGACGGGAACGAGCATGGCGATGAAGGTGGTTGGGAAGGAGAAGGTCATAAAGGTAGGCATGATGGAGCAGATCAAGAGGGAGATCTCTGTGATGAAGATGGTGAAGCATCCGAATATTGTCGAGCTTCATGAGGTTATGGCGAGCAAATCGAAGATCTATTTCGCGATGGAGCTTGTTCGAGGCGGGGAACTGTTCTCCAAAATTTCAAGAGGTCGATTGAGAGAAGATGTGGCTAGAGTTTACTTTCAGCAGCTTATTTCTGCGATCGATTTTGTCACAGTCGGGGGTTTACCATCGGACCTCAAACCGGAGAATCTTCTACTCGACGATGACGGAAATCTTAAGGTAACTGATTTCGGACTCAGCGCATTTTCCGAGCACTTGAAACAGGATGGATTGTTGCACACAACTTGTGGTACTCCGGCGTACGTTGCGCCGGAAGTTATCGGAAAGAAGGGATACAACGGCGCCAAAGCCGATCTATGGTCATGCGGAGTCATCCTTTACGTTCTTCTCGCCGGATTTCTCCCATTTCAGGACGACAACATTGTGGCCATGTACAGGAAGATTTACAGAGGAGATTTCAGGTGCCCGCCGTGGTTCTCACCAGAAGCCCGTCGACTCGTCACCAAACTCCTCGATCCAAATCCGAGCACCAGAATCACAACTTCGAAGATCATGGAATCCTCCTGGTTCAGGAAATCCGTACCGAGAACTGTGATGACAAAAGAGGAGCAGGAATTCGACGAGAGCAACGAGAAATTGAAGCAGTCGGAGACGCTAAATGCCTTCCATATAATTTCATTATCAGAAGGGTTCGATTTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAAGAGAAAGAGGAGCTGAGATTGCGACGACCAGGCCGGCGAGCACGTCAAAAAGAGCGAATCGAGGGTCAGATTGCAAGGCCAAGAGAGCGGAAGAAAGGGAAACTAGCGGTGGCGGCGGAGATCTTCGCCGTAACGCCGTCGTTTCTGGTGGTGGAGGTGAAGAAAGATCACGGCGACACGTTAGAATACAACCAATTCTGCAGCAAAGAGCTCCGGCCGGCGCTCAAAGACATTGTCTGGACATCACCACCAGACAACTCCATGCCGGCTTGA 1242 50.4 MAEKDRDGHSGVLHGKYELGRLLGHGTFAKVYHARNLQTGTSMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKISRGRLREDVARVYFQQLISAIDFVTVGGLPSDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYNGAKADLWSCGVILYVLLAGFLPFQDDNIVAMYRKIYRGDFRCPPWFSPEARRLVTKLLDPNPSTRITTSKIMESSWFRKSVPRTVMTKEEQEFDESNEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRLRRPGRRARQKERIEGQIARPRERKKGKLAVAAEIFAVTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWTSPPDNSMPA 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1447243 1448530 - Lag0033732.1 Lac3g0204 600626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0204 413 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524(InterPro)
Lac3g0204 413 Gene3D Kinase associated domain 1, KA1 331 404 - -
Lac3g0204 413 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 398 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lac3g0204 413 ProSiteProfiles Protein kinase domain profile. 17 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0204 413 SUPERFAMILY Protein kinase-like (PK-like) 13 286 IPR011009 -
Lac3g0204 413 Gene3D Transferase(Phosphotransferase) domain 1 10 330 - -
Lac3g0204 413 Pfam NAF domain 297 322 IPR004041 GO:0007165(InterPro)
Lac3g0204 413 ProSiteProfiles NAF domain profile. 294 318 IPR018451 GO:0007165(InterPro)
Lac3g0204 413 Coils Coil 279 299 - -
Lac3g0204 413 FunFam Non-specific serine/threonine protein kinase 11 304 - -
Lac3g0204 413 SMART serkin_6 17 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0204 413 FunFam Non-specific serine/threonine protein kinase 9 96 - -
Lac3g0204 413 Pfam Protein kinase domain 17 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0204 413 CDD CIPK_C 300 399 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0204 Lac-Chr3:1447243 Lac9g2337 Lac-Chr9:42681407 1.00E-120 dispersed
Lac1g3263 Lac-Chr1:52479790 Lac3g0204 Lac-Chr3:1447243 2.00E-60 transposed
Lac4g2822 Lac-Chr4:46840634 Lac3g0204 Lac-Chr3:1447243 3.20E-14 transposed
Lac6g2847 Lac-Chr6:46079680 Lac3g0204 Lac-Chr3:1447243 1.10E-184 transposed
Lac2g0548 Lac-Chr2:4094340 Lac3g0204 Lac-Chr3:1447243 4.00E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86049 PF00069 Pkinase 2.20E-63 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0204 - - - 0.0