Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac3g0209 | ATGGCGTTGTTGCGCAAATTGTTCTTCCGGAAGCCGCCCGATGGGCTTCTCGAGATCTGTGAAAGAGTTTATGTTTTTGATTGCTGTTTTACCACGGATGCTTGGAAGGAAGAGAATTATGAAGTTTACTTAAGTAGAATAGTTGCTCAACTCCGAGAACATTTAGCAGACGCATCATTCTTGGTGTTCAATTTTAGGAAATTAGAGATGAAAAGTCAGATGGGCGATATCTTATCTAAGTATGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGCCCAGTTCTGACAATGGAAGTGCTTCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAATGTTTTATTAATGCACTGTGAACGTGGTGGTTGGCCGGTTTTAGCTTTCATGCTTTCGGCTCTCTTGATTTATAGGAAACAATATAGTGGGGAGCAAAGGACATTGGACATGGTTTATAGGCAGGCACCTCGGGAACTTTTGCATCTTTTGTCTCCTATGAATCCAGTTCCTTCTCAACTAAGGTTTCTGCAATATGTCGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTATGGACAGAGCTCTAACTTTGGATTGTATCATTTTGAGATTTATTCCAAATTTTGATGGAGAGGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTGCTTGTCAGTGATCGAACTCCTAAAGTTCTGTATTCAACTCCAAAAAGAAGCAAAAATGTCCGTACTTACAAACAGGCAGAATCAGAACTGGTTAAGATTGATGTTAATTGCCATATTCAAGGTGATGTTGTTCTTGAGTGCATCTCCTTGCATGACGACATGGAATTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTGAACCGTGAAGAAATCGACACTTTGTGGAACGCTAAAGATAAATTTCCAAAGGAATTTCGAGCAGAGATTATTTTCTCTGAGATGGATGCTGGAACTTGTACTGTTGCAAATGATATACTTTGCTTTGACGAGGAAGGTCTCCCCGTGGAAGCATTTGCTAAAGTGCAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCCCTTAATGTGCTCCATCAGATGAATGCCTTAAACATAGCCCAGGAAAAATCAGACACTAATTCTCTTTGGAGTACGCAAGTTAGTCCTTTACTCCAGTCTACAAGTCCCAGAAAACTTCCGCAGAAGAAGTCCACATTGGAGAACAAAACTAAAATCCTAGAGAAGGAAGAGCCTATTCCAACATCAAAGTTTTCCCCGCGTGCTGCTAAAACTAAACAGAACAATGAATCTGATTCAGTATTCCAACAGGTGCCTCAATCTTTAGAATCTTTCTCACTCAGCTATGACTTTTTTCAAGACTCACCAAATTCAGAGAGAAGCGACAGGACCTCCTTCAGTGTTTCGGAAGGAGAAACAGAGGTTTCTAATCTGAAAACTGCATCTTCATCTTTTCCAGATGCAGCATTGCATGTTTCTCTTGCTCCTGAACCTCTTCAGACTAAAAGTTACCTTACAGAAACAACAATACCACCACCTCCTCCTCTTCCCCAACTTTCCACGAATATTTCTGCTGTTAATTCTCTACCTTATCCTCCCCCTCCTCCAACTGCATCACCACTTCCGTCTAATAACTTTTCAACTCTAAGACCGGATAAATCTTCACTAACCGAGGAAATAGAAAACTATTCAGAGGATCAAAGTCAGTTACCAACCATTAGCCCTTCCCTGTCTGTAACCTCTGCAATTAGTTCCTCAATACAGTCTTCTCCACCACCTCCTCCACCTCCTCCTTCTACACCTCCTTTGAAGGATACCATAGCAGTTAGAGTTAAAGCTTCTCCACCACCACCCCCTCCTTTTCCTTCAACATTAGCTTCCCATCCTACGATTGCATCCTTAGTGCCTCAGCCACCGCCACCACCACCACCACCGTTTCCTCCTTCAACATCCACTGTAAATCATAAAATTTCATCTCCAATCCCTTCACCACCACCATCACCACCTCCTCCTCCAATGGCCATCACAGATCCTAAAATTTCCTCTCCAGTGCCTCTGCCTCCACCGCCACCACCTCTTCCTATGACGTCCAAACAGGTTGAGAGTACTTCAACATCTCCATTTGCTCCGCCACCACCACCACCACCACCTCTTCCTATGACGTCCAGGCAGGTTGGAGGTACTTCAACATCTTCGCCTGTTCCTCCACCGCCACCACCTCTTCCATCTAGACAGGTTGGAAGTACTTCAACATCTCCATCTGTTCCTCCTCCTCCACCACCACCTGCTTGCACCACAGGCTCCTCCTCACATGTTCCTTGTGCTCCCCCTCCTCCTAACCTTTCTGGGAGAGGGACTTCAAAATCTGGTGAATTGTTTCCTGGTTCTCTTCTTGGAAATGGTTTGTCTAGGTCTTCATCTCCAGGGCCACCGAGTATTTCTCCATCAAGTTCAAAGGGACGAAGTTTGTCACGCACTATAAGTTCAAGAACACATATAACCAAGAAACTGAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAACTCAAAAAACTGGTGAAGCTGCCAGGGCACCAGAGATTGACATGTCAGAACTTGAAAGTCTTTTCTCTGCAGCAGTTCCTGCTACTGATCCAAACACGAAGTCAAGTGGACGCGGTTCAGTTGGGAATAAACCTGAGAAAGTGCAACTGATCGATCACAGGCGAGCTTACAATTGTGAAATCATGCTTTCAAAGGTCAAGGTGCCTTTGCAGGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCGCTGGATATCGATCAGGTTGAGAATCTTATTAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTCAAGGCCTACCCCGGAGAAAAGGAGAAGCTTGGAAAATGTGAACAGTTCTTCTTAGAGTTGATGCAAGTACCTCGTGTAGAGTCAAAACTTCGAGTTTTCTCATTCAAGATACAATTCAGCTCTCAGGTCACTGACCTCAAAAAAAGCCTGAACTTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTCAAGTTGAAGAGAATCATGCAGACAATACTATCTCTAGGAAATGCTTTAAACCAGGGAACAGCGAGGGGCTCTGCTATAGGATTTAGGCTGGATAGCCTTCTTAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAAGTTCTGGATTTTACTAAAGATCTTGCAAGCTTGGAGCCTGCGTCAAAGGTACAATTGAAGGTTTTGGCAGAGGAGATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTACATCTGAAAATGATGGCCCTATATCCAATAATTTCCGAATGGTTTTAAAGGAGTTCCTTCGTTTTGCTGAAGCTGAAGTGAGAACTTTGGCTTCCCTGTACTCTAGCGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGAGAAGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCCCACGAGGAAAACTGCAAGCAGATCGAGCTCGAAATGAAGAAAGCAACTGAAAGCGAAAAATCAAAGGCGGGGCACTTGCATAAGAGGACGAGGACGAGACAATTATCACACTCACAGATTGAGATTGGCAATGTCAACAACACTGGCAGATCGAGCTTTATCCTGTTGTTCATTGTGCTGAGCAGGCTGCTTGTATCGAAAACTGAACAAATTCTTTTGTGTACATAA | 3921 | 43.08 | MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDAWKEENYEVYLSRIVAQLREHLADASFLVFNFRKLEMKSQMGDILSKYDMTIMDYPQQYEGCPVLTMEVLHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLHLLSPMNPVPSQLRFLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNVRTYKQAESELVKIDVNCHIQGDVVLECISLHDDMEFEEMMFRAMFNTAFIRSNILILNREEIDTLWNAKDKFPKEFRAEIIFSEMDAGTCTVANDILCFDEEGLPVEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNIAQEKSDTNSLWSTQVSPLLQSTSPRKLPQKKSTLENKTKILEKEEPIPTSKFSPRAAKTKQNNESDSVFQQVPQSLESFSLSYDFFQDSPNSERSDRTSFSVSEGETEVSNLKTASSSFPDAALHVSLAPEPLQTKSYLTETTIPPPPPLPQLSTNISAVNSLPYPPPPPTASPLPSNNFSTLRPDKSSLTEEIENYSEDQSQLPTISPSLSVTSAISSSIQSSPPPPPPPPSTPPLKDTIAVRVKASPPPPPPFPSTLASHPTIASLVPQPPPPPPPPFPPSTSTVNHKISSPIPSPPPSPPPPPMAITDPKISSPVPLPPPPPPLPMTSKQVESTSTSPFAPPPPPPPPLPMTSRQVGGTSTSSPVPPPPPPLPSRQVGSTSTSPSVPPPPPPPACTTGSSSHVPCAPPPPNLSGRGTSKSGELFPGSLLGNGLSRSSSPGPPSISPSSSKGRSLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAETQKTGEAARAPEIDMSELESLFSAAVPATDPNTKSSGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLQDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKAYPGEKEKLGKCEQFFLELMQVPRVESKLRVFSFKIQFSSQVTDLKKSLNFVNSAAEEIKSSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFTKDLASLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPISNNFRMVLKEFLRFAEAEVRTLASLYSSVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVRMFNRAHEENCKQIELEMKKATESEKSKAGHLHKRTRTRQLSHSQIEIGNVNNTGRSSFILLFIVLSRLLVSKTEQILLCT | 1306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 1483722 | 1494726 | - | Lag0033737.1 | Lac3g0209 | 600631 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac3g0209 | 1306 | MobiDBLite | consensus disorder prediction | 827 | 858 | - | - | |
| Lac3g0209 | 1306 | Coils | Coil | 1229 | 1249 | - | - | |
| Lac3g0209 | 1306 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 12 | 186 | IPR029021 | - | |
| Lac3g0209 | 1306 | Pfam | Formin Homology 2 Domain | 862 | 1229 | IPR015425 | - | |
| Lac3g0209 | 1306 | ProSiteProfiles | C2 tensin-type domain profile. | 199 | 338 | IPR014020 | - | |
| Lac3g0209 | 1306 | MobiDBLite | consensus disorder prediction | 424 | 443 | - | - | |
| Lac3g0209 | 1306 | Gene3D | - | 196 | 340 | - | - | |
| Lac3g0209 | 1306 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 868 | 1245 | - | - | |
| Lac3g0209 | 1306 | SMART | PTEN_C2_2 | 197 | 337 | IPR014020 | - | |
| Lac3g0209 | 1306 | MobiDBLite | consensus disorder prediction | 415 | 464 | - | - | |
| Lac3g0209 | 1306 | MobiDBLite | consensus disorder prediction | 533 | 859 | - | - | |
| Lac3g0209 | 1306 | MobiDBLite | consensus disorder prediction | 616 | 631 | - | - | |
| Lac3g0209 | 1306 | MobiDBLite | consensus disorder prediction | 448 | 464 | - | - | |
| Lac3g0209 | 1306 | MobiDBLite | consensus disorder prediction | 1247 | 1266 | - | - | |
| Lac3g0209 | 1306 | MobiDBLite | consensus disorder prediction | 909 | 928 | - | - | |
| Lac3g0209 | 1306 | Gene3D | Formin, FH2 domain | 854 | 1239 | IPR042201 | - | |
| Lac3g0209 | 1306 | Gene3D | Protein tyrosine phosphatase superfamily | 14 | 191 | IPR029021 | - | |
| Lac3g0209 | 1306 | Pfam | C2 domain of PTEN tumour-suppressor protein | 198 | 337 | IPR014020 | - | |
| Lac3g0209 | 1306 | SMART | it6_source | 534 | 1299 | IPR015425 | - | |
| Lac3g0209 | 1306 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 855 | 1254 | IPR015425 | - | |
| Lac3g0209 | 1306 | MobiDBLite | consensus disorder prediction | 910 | 926 | - | - | |
| Lac3g0209 | 1306 | MobiDBLite | consensus disorder prediction | 780 | 808 | - | - | |
| Lac3g0209 | 1306 | MobiDBLite | consensus disorder prediction | 687 | 724 | - | - | |
| Lac3g0209 | 1306 | MobiDBLite | consensus disorder prediction | 589 | 615 | - | - | |
| Lac3g0209 | 1306 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 201 | 338 | IPR035892 | - | |
| Lac3g0209 | 1306 | PANTHER | FORMIN-J | 737 | 1253 | IPR051144 | - | |
| Lac3g0209 | 1306 | MobiDBLite | consensus disorder prediction | 661 | 678 | - | - | |
| Lac3g0209 | 1306 | MobiDBLite | consensus disorder prediction | 734 | 749 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g2471 | Lac-Chr11:40930121 | Lac3g0209 | Lac-Chr3:1483722 | 7.60E-255 | dispersed | |
| Lac3g0209 | Lac-Chr3:1483722 | Lac3g0591 | Lac-Chr3:4581722 | 3.80E-225 | dispersed | |
| Lac2g0546 | Lac-Chr2:4064488 | Lac3g0209 | Lac-Chr3:1483722 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac3g0209 | K28090 | - | csv:101221713 | 1892.47 |