Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0209 ATGGCGTTGTTGCGCAAATTGTTCTTCCGGAAGCCGCCCGATGGGCTTCTCGAGATCTGTGAAAGAGTTTATGTTTTTGATTGCTGTTTTACCACGGATGCTTGGAAGGAAGAGAATTATGAAGTTTACTTAAGTAGAATAGTTGCTCAACTCCGAGAACATTTAGCAGACGCATCATTCTTGGTGTTCAATTTTAGGAAATTAGAGATGAAAAGTCAGATGGGCGATATCTTATCTAAGTATGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGCCCAGTTCTGACAATGGAAGTGCTTCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAATGTTTTATTAATGCACTGTGAACGTGGTGGTTGGCCGGTTTTAGCTTTCATGCTTTCGGCTCTCTTGATTTATAGGAAACAATATAGTGGGGAGCAAAGGACATTGGACATGGTTTATAGGCAGGCACCTCGGGAACTTTTGCATCTTTTGTCTCCTATGAATCCAGTTCCTTCTCAACTAAGGTTTCTGCAATATGTCGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTATGGACAGAGCTCTAACTTTGGATTGTATCATTTTGAGATTTATTCCAAATTTTGATGGAGAGGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTGCTTGTCAGTGATCGAACTCCTAAAGTTCTGTATTCAACTCCAAAAAGAAGCAAAAATGTCCGTACTTACAAACAGGCAGAATCAGAACTGGTTAAGATTGATGTTAATTGCCATATTCAAGGTGATGTTGTTCTTGAGTGCATCTCCTTGCATGACGACATGGAATTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTGAACCGTGAAGAAATCGACACTTTGTGGAACGCTAAAGATAAATTTCCAAAGGAATTTCGAGCAGAGATTATTTTCTCTGAGATGGATGCTGGAACTTGTACTGTTGCAAATGATATACTTTGCTTTGACGAGGAAGGTCTCCCCGTGGAAGCATTTGCTAAAGTGCAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCCCTTAATGTGCTCCATCAGATGAATGCCTTAAACATAGCCCAGGAAAAATCAGACACTAATTCTCTTTGGAGTACGCAAGTTAGTCCTTTACTCCAGTCTACAAGTCCCAGAAAACTTCCGCAGAAGAAGTCCACATTGGAGAACAAAACTAAAATCCTAGAGAAGGAAGAGCCTATTCCAACATCAAAGTTTTCCCCGCGTGCTGCTAAAACTAAACAGAACAATGAATCTGATTCAGTATTCCAACAGGTGCCTCAATCTTTAGAATCTTTCTCACTCAGCTATGACTTTTTTCAAGACTCACCAAATTCAGAGAGAAGCGACAGGACCTCCTTCAGTGTTTCGGAAGGAGAAACAGAGGTTTCTAATCTGAAAACTGCATCTTCATCTTTTCCAGATGCAGCATTGCATGTTTCTCTTGCTCCTGAACCTCTTCAGACTAAAAGTTACCTTACAGAAACAACAATACCACCACCTCCTCCTCTTCCCCAACTTTCCACGAATATTTCTGCTGTTAATTCTCTACCTTATCCTCCCCCTCCTCCAACTGCATCACCACTTCCGTCTAATAACTTTTCAACTCTAAGACCGGATAAATCTTCACTAACCGAGGAAATAGAAAACTATTCAGAGGATCAAAGTCAGTTACCAACCATTAGCCCTTCCCTGTCTGTAACCTCTGCAATTAGTTCCTCAATACAGTCTTCTCCACCACCTCCTCCACCTCCTCCTTCTACACCTCCTTTGAAGGATACCATAGCAGTTAGAGTTAAAGCTTCTCCACCACCACCCCCTCCTTTTCCTTCAACATTAGCTTCCCATCCTACGATTGCATCCTTAGTGCCTCAGCCACCGCCACCACCACCACCACCGTTTCCTCCTTCAACATCCACTGTAAATCATAAAATTTCATCTCCAATCCCTTCACCACCACCATCACCACCTCCTCCTCCAATGGCCATCACAGATCCTAAAATTTCCTCTCCAGTGCCTCTGCCTCCACCGCCACCACCTCTTCCTATGACGTCCAAACAGGTTGAGAGTACTTCAACATCTCCATTTGCTCCGCCACCACCACCACCACCACCTCTTCCTATGACGTCCAGGCAGGTTGGAGGTACTTCAACATCTTCGCCTGTTCCTCCACCGCCACCACCTCTTCCATCTAGACAGGTTGGAAGTACTTCAACATCTCCATCTGTTCCTCCTCCTCCACCACCACCTGCTTGCACCACAGGCTCCTCCTCACATGTTCCTTGTGCTCCCCCTCCTCCTAACCTTTCTGGGAGAGGGACTTCAAAATCTGGTGAATTGTTTCCTGGTTCTCTTCTTGGAAATGGTTTGTCTAGGTCTTCATCTCCAGGGCCACCGAGTATTTCTCCATCAAGTTCAAAGGGACGAAGTTTGTCACGCACTATAAGTTCAAGAACACATATAACCAAGAAACTGAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAACTCAAAAAACTGGTGAAGCTGCCAGGGCACCAGAGATTGACATGTCAGAACTTGAAAGTCTTTTCTCTGCAGCAGTTCCTGCTACTGATCCAAACACGAAGTCAAGTGGACGCGGTTCAGTTGGGAATAAACCTGAGAAAGTGCAACTGATCGATCACAGGCGAGCTTACAATTGTGAAATCATGCTTTCAAAGGTCAAGGTGCCTTTGCAGGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCGCTGGATATCGATCAGGTTGAGAATCTTATTAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTCAAGGCCTACCCCGGAGAAAAGGAGAAGCTTGGAAAATGTGAACAGTTCTTCTTAGAGTTGATGCAAGTACCTCGTGTAGAGTCAAAACTTCGAGTTTTCTCATTCAAGATACAATTCAGCTCTCAGGTCACTGACCTCAAAAAAAGCCTGAACTTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTCAAGTTGAAGAGAATCATGCAGACAATACTATCTCTAGGAAATGCTTTAAACCAGGGAACAGCGAGGGGCTCTGCTATAGGATTTAGGCTGGATAGCCTTCTTAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAAGTTCTGGATTTTACTAAAGATCTTGCAAGCTTGGAGCCTGCGTCAAAGGTACAATTGAAGGTTTTGGCAGAGGAGATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTACATCTGAAAATGATGGCCCTATATCCAATAATTTCCGAATGGTTTTAAAGGAGTTCCTTCGTTTTGCTGAAGCTGAAGTGAGAACTTTGGCTTCCCTGTACTCTAGCGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGAGAAGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCCCACGAGGAAAACTGCAAGCAGATCGAGCTCGAAATGAAGAAAGCAACTGAAAGCGAAAAATCAAAGGCGGGGCACTTGCATAAGAGGACGAGGACGAGACAATTATCACACTCACAGATTGAGATTGGCAATGTCAACAACACTGGCAGATCGAGCTTTATCCTGTTGTTCATTGTGCTGAGCAGGCTGCTTGTATCGAAAACTGAACAAATTCTTTTGTGTACATAA 3921 43.08 MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDAWKEENYEVYLSRIVAQLREHLADASFLVFNFRKLEMKSQMGDILSKYDMTIMDYPQQYEGCPVLTMEVLHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLHLLSPMNPVPSQLRFLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNVRTYKQAESELVKIDVNCHIQGDVVLECISLHDDMEFEEMMFRAMFNTAFIRSNILILNREEIDTLWNAKDKFPKEFRAEIIFSEMDAGTCTVANDILCFDEEGLPVEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNIAQEKSDTNSLWSTQVSPLLQSTSPRKLPQKKSTLENKTKILEKEEPIPTSKFSPRAAKTKQNNESDSVFQQVPQSLESFSLSYDFFQDSPNSERSDRTSFSVSEGETEVSNLKTASSSFPDAALHVSLAPEPLQTKSYLTETTIPPPPPLPQLSTNISAVNSLPYPPPPPTASPLPSNNFSTLRPDKSSLTEEIENYSEDQSQLPTISPSLSVTSAISSSIQSSPPPPPPPPSTPPLKDTIAVRVKASPPPPPPFPSTLASHPTIASLVPQPPPPPPPPFPPSTSTVNHKISSPIPSPPPSPPPPPMAITDPKISSPVPLPPPPPPLPMTSKQVESTSTSPFAPPPPPPPPLPMTSRQVGGTSTSSPVPPPPPPLPSRQVGSTSTSPSVPPPPPPPACTTGSSSHVPCAPPPPNLSGRGTSKSGELFPGSLLGNGLSRSSSPGPPSISPSSSKGRSLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAETQKTGEAARAPEIDMSELESLFSAAVPATDPNTKSSGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLQDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKAYPGEKEKLGKCEQFFLELMQVPRVESKLRVFSFKIQFSSQVTDLKKSLNFVNSAAEEIKSSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFTKDLASLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPISNNFRMVLKEFLRFAEAEVRTLASLYSSVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVRMFNRAHEENCKQIELEMKKATESEKSKAGHLHKRTRTRQLSHSQIEIGNVNNTGRSSFILLFIVLSRLLVSKTEQILLCT 1306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1483722 1494726 - Lag0033737.1 Lac3g0209 600631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0209 1306 MobiDBLite consensus disorder prediction 827 858 - -
Lac3g0209 1306 Coils Coil 1229 1249 - -
Lac3g0209 1306 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 186 IPR029021 -
Lac3g0209 1306 Pfam Formin Homology 2 Domain 862 1229 IPR015425 -
Lac3g0209 1306 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Lac3g0209 1306 MobiDBLite consensus disorder prediction 424 443 - -
Lac3g0209 1306 Gene3D - 196 340 - -
Lac3g0209 1306 SUPERFAMILY Formin homology 2 domain (FH2 domain) 868 1245 - -
Lac3g0209 1306 SMART PTEN_C2_2 197 337 IPR014020 -
Lac3g0209 1306 MobiDBLite consensus disorder prediction 415 464 - -
Lac3g0209 1306 MobiDBLite consensus disorder prediction 533 859 - -
Lac3g0209 1306 MobiDBLite consensus disorder prediction 616 631 - -
Lac3g0209 1306 MobiDBLite consensus disorder prediction 448 464 - -
Lac3g0209 1306 MobiDBLite consensus disorder prediction 1247 1266 - -
Lac3g0209 1306 MobiDBLite consensus disorder prediction 909 928 - -
Lac3g0209 1306 Gene3D Formin, FH2 domain 854 1239 IPR042201 -
Lac3g0209 1306 Gene3D Protein tyrosine phosphatase superfamily 14 191 IPR029021 -
Lac3g0209 1306 Pfam C2 domain of PTEN tumour-suppressor protein 198 337 IPR014020 -
Lac3g0209 1306 SMART it6_source 534 1299 IPR015425 -
Lac3g0209 1306 ProSiteProfiles Formin homology-2 (FH2) domain profile. 855 1254 IPR015425 -
Lac3g0209 1306 MobiDBLite consensus disorder prediction 910 926 - -
Lac3g0209 1306 MobiDBLite consensus disorder prediction 780 808 - -
Lac3g0209 1306 MobiDBLite consensus disorder prediction 687 724 - -
Lac3g0209 1306 MobiDBLite consensus disorder prediction 589 615 - -
Lac3g0209 1306 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Lac3g0209 1306 PANTHER FORMIN-J 737 1253 IPR051144 -
Lac3g0209 1306 MobiDBLite consensus disorder prediction 661 678 - -
Lac3g0209 1306 MobiDBLite consensus disorder prediction 734 749 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0209 K28090 - - csv:101221713 1892.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2471 Lac-Chr11:40930121 Lac3g0209 Lac-Chr3:1483722 7.60E-255 dispersed
Lac3g0209 Lac-Chr3:1483722 Lac3g0591 Lac-Chr3:4581722 3.80E-225 dispersed
Lac2g0546 Lac-Chr2:4064488 Lac3g0209 Lac-Chr3:1483722 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac2g2055 . 84 237 Protein tyrosine phosphatase (PTP) family AT1G71860 56.8 4.2e-43 172.9
Lac3g0027 . 1 760 Protein tyrosine phosphatase (PTP) family AT5G23720 66.4 8.1e-275 944.1
Lac12g2326 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 59.4 9.3e-44 174.1
Lac12g0829 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 5.1e-72 268.1
Lac13g0651 . 140 324 Protein tyrosine phosphatase (PTP) family AT3G52180 75.7 8.6e-82 301.2
Lac13g1219 . 33 282 Protein tyrosine phosphatase (PTP) family AT3G10940 71.5 4.5e-107 385.2
Lac8g0287 . 29 477 Protein tyrosine phosphatase (PTP) family AT3G01510 73.3 1.6e-204 709.5
Lac9g2220 . 9 212 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 1.2e-74 277.3
Lac12g0819 . 33 241 Protein tyrosine phosphatase (PTP) family AT2G32960 63.4 6.6e-73 271.6
Lac5g0369 . 1 332 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 7.7e-98 354.8
Lac6g3049 . 12 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 2.5e-80 296.6
Lac6g3049 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.1e-45 180.6
Lac9g2220 . 18 212 Protein tyrosine phosphatase (PTP) family AT4G03960 70.8 4.4e-77 285.0
Lac12g0819 . 42 241 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 1.1e-70 263.8
Lac3g1690 . 120 291 Protein tyrosine phosphatase (PTP) family AT4G03960 57.0 1.3e-55 213.8
Lac3g1690 . 115 304 Protein tyrosine phosphatase (PTP) family AT3G02800 70.0 6.3e-79 291.2
Lac9g2220 . 34 206 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 9.9e-56 214.2
Lac12g0819 . 40 230 Protein tyrosine phosphatase (PTP) family AT3G02800 50.3 5.6e-51 198.4
Lac13g0933 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 1.4e-62 238.8
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac12g0225 . 32 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.7 5.1e-217 751.5
Lac1g2600 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.7 1.6e-202 703.4
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac9g2686 . 17 246 Protein tyrosine phosphatase (PTP) family AT3G44620 56.3 3.7e-71 265.8
Lac5g0274 . 23 309 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 3.7e-107 385.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009302 0 2 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 2 0 33