Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0227 ATGGGTCAGGCCAAGGTCGAAGAGATCGGGATTTTGGCCCGACGCCCTGCTCGGCCTCGGCCTTGGGCCGAGGCTGAGGCCCATGAGGGTCTGCTTGCGCGAGACGAGCTTGTCCGGCTCCGTTTGGTCTCTGTTGCCTCTGGTCGTCCAGGCTCCACATTGTTCGTCTCGAAACGCCTTCGAATTCCTAAAAACCCTAGGAGCATGAGCAGTCAAAATGTACGAATGGAGATATTTGTCGTCCTTTGTATACCCATGATATTCTCTAACCAATCGCGCACTGCCGCTGAATCTGAATCTTCTTCTTCTTCTTCTTCTTCTTCCCAGGTTTCTTTCTTTGTTTTCCTCTTGCTCCTGCGCCGGAGATTTCCTCCTTCAGCGATAGATCGAGTTATGCAGCAAGGTGATCAGACGGTTCTAAGCTTGAGACCTGGTGGCGGTCGACCTAGACTCCTTGGTCCTCGCTTTGAGCTTTCATCCTCTTCCTCATCGTCTTCATCTTCTTTTGCCTTCGGTTCCTTTTCCTCTGATCTCTCCACCCTCCGTCCCCATGGCGGTCCTTCCGCTTCCTTTTCTGTGAAGGCTGGAGATTCACGGTTTGAGGGTCGTGAGCGTGTTCGATATACCCGAGATCAGCTTTTGCAGCTTCGAGAGGCTGTGGAAGTTCCAGATGATATACTAAAACTTAAACGGGATATTGATGTGGAAATTTTTGGCGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATCAACCTAATCAGTCTCAGAATCGCTATTCCGAGCCAGACAATCGGGACTGGCGTGGCCGTTCTGCCCAATTCTCTGCTTCTGGAGAGGAGAGGTCCAGGGAAACAATTCGGGATAGAGATTTTGGGGGTCATTATGACTCTAGGCAGCAAGACTCAAATCAATTGAGTCGTCAAGACTCACACTCATCTTGGACCCGGTCCAATTCTAACCAAGGGGGAGGAACTCCTGCTTTAATCAAAGCCGAGGTACCATGGTCAGCTAGGAGAGGAAATCTATCTGATAAGGATCGTGTCTTGAAGACTGTAAAGGGGATATTGAACAAGCTAACACCAGAAAAGTTTGATCTCCTCAAGGGTCAGCTAATTGACTCTGGAATCACCTCCGCTGATATTTTGAAGGATGTCATTTCACTGATTTTTGACAAGGCTGTTCTTGAGCCCACATTTTGCCCCATGTATGCTCAATTGTGTTCTGATCTGAATCAGAAGCTACCTCAATTTCCCTCTGATGAACCTGGTGGAAGGGAAATTACTTTTAAACGAGTCCTCTTAAATATCTGTCAGGAGGCTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGGTTAGGCAGATGACTGCCCCCGAGCAAGAGAGCGAGCGCAGAGATAAAGAAAGACTGGTCAAACTTCGTACTCTTGGAAATATTCGATTAATTGGAGAGCTTCTGAAGCAAAAGATGGTGCCGGAGAAGATTGTCCACCACATCGTGAAGGAACTTTTAGGGCCAGACAACAAAACCTGTCCCGCTGAAGAAAATGTTGAGGCCATCTGTCAGTTTTTTAACACCATAGGTAAGCAGCTAGACGAGAATGCAAAATCACGTCGTATAAATGACATGTACTTCGGCCGATTGAAAGAATTGACTACACACTCTCAGTTGGCCCCACGATTGAAGTTCATGGTCCGTGATGTCCTTGATTTGCGTGCTAACAATTGGGTTCCTAGGCGTGAAGAGGTTAAAGCCAAAACTATTACTGAAATACATTCAGAGGCAGAAAAAAATCTGGGACTACGTCCTGGTGCTACTGTCAATATCAGAAATAGTCGTGGCGCTGTGTCCAGTTCTCCTGGGAACACCAGCCCTGGGGGCTTTCCTATCAATCGACCTGGTTTTGGGGGTATGATGCCTGGCATGCCAGGAACCAGGAAGATGCCTGGTATGCCAGGAATGGATAATGACAACTGGGAGGTACCTAGGGCCCGGCCTATACCAAGGGGGGCAGACGGATCTGGTATTCAACCTGCTGGACGTGGCCAGACACCGTTGGTTGGCAAAGCATCAACCTTGAATGCAAGGCTACTACCCCAGGGTACTGGTGGGCTCATTAGTAACAAGACTAGTGCTCTATTGCAGGGTGCAGGTGCATCTACTACTCGTCCTGTTAACTTTGGTCAAGGGTTAGAGCCCTCTGGCCAGGTTCATAAACCTACTACGGCAGCAACAGTCCTTCCACCTGCCGAGAGACCACAGGTTCCAGCTGCATCTGCAAAACAAGATGATCTCAAAAAGAAAACTCTCTCTCTTCTTGAAGAATATTTCAGTATCCGGCTTTTGGATGAAGCTCTACAGTGCGTGGAAGAACTCATGTCACCAGCTTACCACCCTGAGGTTGTTAAAGAAGCCATTTCCTTGGCCCTAGAGAAAAGCCCACCCTGTGTTGAAGCAGTTGTAAAGTTTCTGGACTATTTATTCTCCAGGAAGGTTTTTACAGCTGGAGACATTGGGACTGGATGTTTGCTGTATGCTTCTGGGCTCGACGATGCAGGCATCGATTTACCAAAAGCCCCAATCAATTTTGGTGAGATCATTGGAAAACTTGTCATATCTGGTGGTTTGGATTTTCAGGTGTTGAAGGAGGCCCTTAAGAAGGTGGAAGATGACAGGTTCAGGAAAGATATATTTGATGCTGTCTTGAAGACGATTAGTTCTAATGTGTCTGGGCAAGGATTATTGGATTCGTTCGCATCGGATATCGAGGCCTGTCGAAGTCTGGCATATTAA 2790 47.81 MGQAKVEEIGILARRPARPRPWAEAEAHEGLLARDELVRLRLVSVASGRPGSTLFVSKRLRIPKNPRSMSSQNVRMEIFVVLCIPMIFSNQSRTAAESESSSSSSSSSQVSFFVFLLLLRRRFPPSAIDRVMQQGDQTVLSLRPGGGRPRLLGPRFELSSSSSSSSSSFAFGSFSSDLSTLRPHGGPSASFSVKAGDSRFEGRERVRYTRDQLLQLREAVEVPDDILKLKRDIDVEIFGEEQSWSRGESNQPNQSQNRYSEPDNRDWRGRSAQFSASGEERSRETIRDRDFGGHYDSRQQDSNQLSRQDSHSSWTRSNSNQGGGTPALIKAEVPWSARRGNLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREITFKRVLLNICQEAFEGADKLREEVRQMTAPEQESERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVKELLGPDNKTCPAEENVEAICQFFNTIGKQLDENAKSRRINDMYFGRLKELTTHSQLAPRLKFMVRDVLDLRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGATVNIRNSRGAVSSSPGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARPIPRGADGSGIQPAGRGQTPLVGKASTLNARLLPQGTGGLISNKTSALLQGAGASTTRPVNFGQGLEPSGQVHKPTTAATVLPPAERPQVPAASAKQDDLKKKTLSLLEEYFSIRLLDEALQCVEELMSPAYHPEVVKEAISLALEKSPPCVEAVVKFLDYLFSRKVFTAGDIGTGCLLYASGLDDAGIDLPKAPINFGEIIGKLVISGGLDFQVLKEALKKVEDDRFRKDIFDAVLKTISSNVSGQGLLDSFASDIEACRSLAY 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1594054 1603482 - Lag0033755.1 Lac3g0227 600649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0227 929 MobiDBLite consensus disorder prediction 280 296 - -
Lac3g0227 929 SMART ma3_7 764 876 IPR003891 -
Lac3g0227 929 MobiDBLite consensus disorder prediction 139 167 - -
Lac3g0227 929 SMART if4_15 349 574 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Lac3g0227 929 Gene3D - 758 923 - -
Lac3g0227 929 FunFam Eukaryotic translation initiation factor isoform 4G-2 340 575 - -
Lac3g0227 929 Pfam MA3 domain 764 876 IPR003891 -
Lac3g0227 929 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 158 927 IPR045208 GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0016281(PANTHER)
Lac3g0227 929 SUPERFAMILY ARM repeat 342 577 IPR016024 -
Lac3g0227 929 MobiDBLite consensus disorder prediction 242 327 - -
Lac3g0227 929 Pfam MIF4G domain 349 574 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Lac3g0227 929 ProSiteProfiles MI domain profile. 763 885 IPR003891 -
Lac3g0227 929 MobiDBLite consensus disorder prediction 243 260 - -
Lac3g0227 929 Gene3D - 340 575 - -
Lac3g0227 929 MobiDBLite consensus disorder prediction 297 325 - -
Lac3g0227 929 SUPERFAMILY ARM repeat 760 917 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0227 Lac-Chr3:1594054 Lac7g0417 Lac-Chr7:3244527 9.70E-58 dispersed
Lac2g0531 Lac-Chr2:3970705 Lac3g0227 Lac-Chr3:1594054 2.80E-292 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0227 K03260 - csv:101207520 1367.06