Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac3g0227 | ATGGGTCAGGCCAAGGTCGAAGAGATCGGGATTTTGGCCCGACGCCCTGCTCGGCCTCGGCCTTGGGCCGAGGCTGAGGCCCATGAGGGTCTGCTTGCGCGAGACGAGCTTGTCCGGCTCCGTTTGGTCTCTGTTGCCTCTGGTCGTCCAGGCTCCACATTGTTCGTCTCGAAACGCCTTCGAATTCCTAAAAACCCTAGGAGCATGAGCAGTCAAAATGTACGAATGGAGATATTTGTCGTCCTTTGTATACCCATGATATTCTCTAACCAATCGCGCACTGCCGCTGAATCTGAATCTTCTTCTTCTTCTTCTTCTTCTTCCCAGGTTTCTTTCTTTGTTTTCCTCTTGCTCCTGCGCCGGAGATTTCCTCCTTCAGCGATAGATCGAGTTATGCAGCAAGGTGATCAGACGGTTCTAAGCTTGAGACCTGGTGGCGGTCGACCTAGACTCCTTGGTCCTCGCTTTGAGCTTTCATCCTCTTCCTCATCGTCTTCATCTTCTTTTGCCTTCGGTTCCTTTTCCTCTGATCTCTCCACCCTCCGTCCCCATGGCGGTCCTTCCGCTTCCTTTTCTGTGAAGGCTGGAGATTCACGGTTTGAGGGTCGTGAGCGTGTTCGATATACCCGAGATCAGCTTTTGCAGCTTCGAGAGGCTGTGGAAGTTCCAGATGATATACTAAAACTTAAACGGGATATTGATGTGGAAATTTTTGGCGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATCAACCTAATCAGTCTCAGAATCGCTATTCCGAGCCAGACAATCGGGACTGGCGTGGCCGTTCTGCCCAATTCTCTGCTTCTGGAGAGGAGAGGTCCAGGGAAACAATTCGGGATAGAGATTTTGGGGGTCATTATGACTCTAGGCAGCAAGACTCAAATCAATTGAGTCGTCAAGACTCACACTCATCTTGGACCCGGTCCAATTCTAACCAAGGGGGAGGAACTCCTGCTTTAATCAAAGCCGAGGTACCATGGTCAGCTAGGAGAGGAAATCTATCTGATAAGGATCGTGTCTTGAAGACTGTAAAGGGGATATTGAACAAGCTAACACCAGAAAAGTTTGATCTCCTCAAGGGTCAGCTAATTGACTCTGGAATCACCTCCGCTGATATTTTGAAGGATGTCATTTCACTGATTTTTGACAAGGCTGTTCTTGAGCCCACATTTTGCCCCATGTATGCTCAATTGTGTTCTGATCTGAATCAGAAGCTACCTCAATTTCCCTCTGATGAACCTGGTGGAAGGGAAATTACTTTTAAACGAGTCCTCTTAAATATCTGTCAGGAGGCTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGGTTAGGCAGATGACTGCCCCCGAGCAAGAGAGCGAGCGCAGAGATAAAGAAAGACTGGTCAAACTTCGTACTCTTGGAAATATTCGATTAATTGGAGAGCTTCTGAAGCAAAAGATGGTGCCGGAGAAGATTGTCCACCACATCGTGAAGGAACTTTTAGGGCCAGACAACAAAACCTGTCCCGCTGAAGAAAATGTTGAGGCCATCTGTCAGTTTTTTAACACCATAGGTAAGCAGCTAGACGAGAATGCAAAATCACGTCGTATAAATGACATGTACTTCGGCCGATTGAAAGAATTGACTACACACTCTCAGTTGGCCCCACGATTGAAGTTCATGGTCCGTGATGTCCTTGATTTGCGTGCTAACAATTGGGTTCCTAGGCGTGAAGAGGTTAAAGCCAAAACTATTACTGAAATACATTCAGAGGCAGAAAAAAATCTGGGACTACGTCCTGGTGCTACTGTCAATATCAGAAATAGTCGTGGCGCTGTGTCCAGTTCTCCTGGGAACACCAGCCCTGGGGGCTTTCCTATCAATCGACCTGGTTTTGGGGGTATGATGCCTGGCATGCCAGGAACCAGGAAGATGCCTGGTATGCCAGGAATGGATAATGACAACTGGGAGGTACCTAGGGCCCGGCCTATACCAAGGGGGGCAGACGGATCTGGTATTCAACCTGCTGGACGTGGCCAGACACCGTTGGTTGGCAAAGCATCAACCTTGAATGCAAGGCTACTACCCCAGGGTACTGGTGGGCTCATTAGTAACAAGACTAGTGCTCTATTGCAGGGTGCAGGTGCATCTACTACTCGTCCTGTTAACTTTGGTCAAGGGTTAGAGCCCTCTGGCCAGGTTCATAAACCTACTACGGCAGCAACAGTCCTTCCACCTGCCGAGAGACCACAGGTTCCAGCTGCATCTGCAAAACAAGATGATCTCAAAAAGAAAACTCTCTCTCTTCTTGAAGAATATTTCAGTATCCGGCTTTTGGATGAAGCTCTACAGTGCGTGGAAGAACTCATGTCACCAGCTTACCACCCTGAGGTTGTTAAAGAAGCCATTTCCTTGGCCCTAGAGAAAAGCCCACCCTGTGTTGAAGCAGTTGTAAAGTTTCTGGACTATTTATTCTCCAGGAAGGTTTTTACAGCTGGAGACATTGGGACTGGATGTTTGCTGTATGCTTCTGGGCTCGACGATGCAGGCATCGATTTACCAAAAGCCCCAATCAATTTTGGTGAGATCATTGGAAAACTTGTCATATCTGGTGGTTTGGATTTTCAGGTGTTGAAGGAGGCCCTTAAGAAGGTGGAAGATGACAGGTTCAGGAAAGATATATTTGATGCTGTCTTGAAGACGATTAGTTCTAATGTGTCTGGGCAAGGATTATTGGATTCGTTCGCATCGGATATCGAGGCCTGTCGAAGTCTGGCATATTAA | 2790 | 47.81 | MGQAKVEEIGILARRPARPRPWAEAEAHEGLLARDELVRLRLVSVASGRPGSTLFVSKRLRIPKNPRSMSSQNVRMEIFVVLCIPMIFSNQSRTAAESESSSSSSSSSQVSFFVFLLLLRRRFPPSAIDRVMQQGDQTVLSLRPGGGRPRLLGPRFELSSSSSSSSSSFAFGSFSSDLSTLRPHGGPSASFSVKAGDSRFEGRERVRYTRDQLLQLREAVEVPDDILKLKRDIDVEIFGEEQSWSRGESNQPNQSQNRYSEPDNRDWRGRSAQFSASGEERSRETIRDRDFGGHYDSRQQDSNQLSRQDSHSSWTRSNSNQGGGTPALIKAEVPWSARRGNLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREITFKRVLLNICQEAFEGADKLREEVRQMTAPEQESERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVKELLGPDNKTCPAEENVEAICQFFNTIGKQLDENAKSRRINDMYFGRLKELTTHSQLAPRLKFMVRDVLDLRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGATVNIRNSRGAVSSSPGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARPIPRGADGSGIQPAGRGQTPLVGKASTLNARLLPQGTGGLISNKTSALLQGAGASTTRPVNFGQGLEPSGQVHKPTTAATVLPPAERPQVPAASAKQDDLKKKTLSLLEEYFSIRLLDEALQCVEELMSPAYHPEVVKEAISLALEKSPPCVEAVVKFLDYLFSRKVFTAGDIGTGCLLYASGLDDAGIDLPKAPINFGEIIGKLVISGGLDFQVLKEALKKVEDDRFRKDIFDAVLKTISSNVSGQGLLDSFASDIEACRSLAY | 929 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1594054 | 1603482 | - | Lag0033755.1 | Lac3g0227 | 600649 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac3g0227 | 929 | MobiDBLite | consensus disorder prediction | 280 | 296 | - | - | |
Lac3g0227 | 929 | SMART | ma3_7 | 764 | 876 | IPR003891 | - | |
Lac3g0227 | 929 | MobiDBLite | consensus disorder prediction | 139 | 167 | - | - | |
Lac3g0227 | 929 | SMART | if4_15 | 349 | 574 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Lac3g0227 | 929 | Gene3D | - | 758 | 923 | - | - | |
Lac3g0227 | 929 | FunFam | Eukaryotic translation initiation factor isoform 4G-2 | 340 | 575 | - | - | |
Lac3g0227 | 929 | Pfam | MA3 domain | 764 | 876 | IPR003891 | - | |
Lac3g0227 | 929 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA | 158 | 927 | IPR045208 | GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0016281(PANTHER) | |
Lac3g0227 | 929 | SUPERFAMILY | ARM repeat | 342 | 577 | IPR016024 | - | |
Lac3g0227 | 929 | MobiDBLite | consensus disorder prediction | 242 | 327 | - | - | |
Lac3g0227 | 929 | Pfam | MIF4G domain | 349 | 574 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Lac3g0227 | 929 | ProSiteProfiles | MI domain profile. | 763 | 885 | IPR003891 | - | |
Lac3g0227 | 929 | MobiDBLite | consensus disorder prediction | 243 | 260 | - | - | |
Lac3g0227 | 929 | Gene3D | - | 340 | 575 | - | - | |
Lac3g0227 | 929 | MobiDBLite | consensus disorder prediction | 297 | 325 | - | - | |
Lac3g0227 | 929 | SUPERFAMILY | ARM repeat | 760 | 917 | IPR016024 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac3g0227 | Lac-Chr3:1594054 | Lac7g0417 | Lac-Chr7:3244527 | 9.70E-58 | dispersed | |
Lac2g0531 | Lac-Chr2:3970705 | Lac3g0227 | Lac-Chr3:1594054 | 2.80E-292 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac3g0227 | K03260 | - | csv:101207520 | 1367.06 |