Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0229 ATGGAAGCCAGCGCTGGACTTGTCGCTGGATCTCACAACCGGAATGAGCTTGTTGTCATTCATGGCCATGAGGAGCCAAAGCCATTGAAGAACTTGGATGGTCAAGTTTGTGAGATCTGTGGTGATGAAGTGGGGCTTACTGTGGATGGTGATCTATTTGTTGCCTGCAATGAATGTGGTTTTCCAGCCTGCAGACCTTGCTATGAGTATGAAAGAAGAGAAGGAAGCCAACAGTGTCCTCAGTGTAAAACTAGATATAAGCGACTCAAAGGGAGTCCAAGGGTCGAGGGAGATGATGACGAAGAAGACATAGATGACATTGAACATGAATTCAACATTGATGATGAGAGGAACAAGCACAGTCATATTGCAGAAGCTATGCTTCATGGCAAGATGAGCTATGGTAGAGGCCCAGATGATGATGAAAATGCACAGTATGGAAGAACACAGCCAGCAAATGGTGAGTTTCCTTTATCATCTCAAGGTTATGGAGATCAGATGTTATCTTCTTCACTGCACAAACGTGTGCATCCATATCCAGTTTCTGAACCAGGGAGTGCAAGATGGGATGAAAAGAGAGAGGAAGGTTGGAAAGATAGAATGGATGATTGGAAATTGCAGCAAGGCAATCTTGGGCCTGAACCTGATGATGTCAATGACCCTGACATGGCTATGATTGATGCAGCTAGACAGCCACTATCAAGGAAGGTACCAATAGCATCTAGCAAAATTAATCCTTATCGGATGGTTATTGTGGCTCGGCTTGTTATTCTTGCCTTCTTCCTGCGGTACCGAATCCTAAATCCAGTGCATGATGCATTGGGTTTGTGGCTAACTTCTGTGATATGTGAAATCTGGTTTGCGTTTTCATGGATCCTCGATCAGTTCCCCAAATGGTTCCCAATCGATCGTGAAACCTACTTGGATCGTCTATCCCTCAGGTATGAACGAGAGGGCGAACCTAATTTGCTTGCTCCAGTGGACATCTTCGTCAGTACTGTAGATCCAATGAAGGAACCTCCTCTTGTAACGGCTAACACAATCTTATCTATCTTGGCCATGGACTATCCAGTTGATAAGATTTCATGCTACGTTTCAGACGATGGAGCTTCCATGCTTACCTTTGAAGCAATGTCTGAAACTGCAGAATTTGCCAGGAAATGGGTGCCTTTTTGTAAGAAGTTTTCCATAGAACCACGAGCACCTGAAATGTACTTTTGTGAGAAGATTGATTATCTCAAGGATAAAGTCCAACCAACATTTGTAAAGGAGCGTCGAGCAATGAAGAGAGAATATGAAGAATTCAAGGTCAGGATAAATGCTCAAGTAGCAAAAGCCACGAAAGTTCCCCCCGAAGGATGGATAATGCAAGACGGAACACCATGGCCAGGCAACAACACAAAAGATCATCCTGGTATGATCCAAGTCTTTCTGGGTCACAGTGGAGGCCTTGATGCAGAAGGAAATGAACTTCCCCGCCTAGTTTATGTATCTCGTGAGAAAAGACCAGGTTTCCAACATCACAAGAAAGCCGGTGCCATGAATGCCTTGATTCGTGTCTCTGCAGTGCTTACAAATGCTCCATTCATGTTGAACTTGGATTGTGATCACTACATAAACAATAGCAAAGCAGCCCGAGAGGCCATGTGTTTCCTCATGGACCCTCAAGTTGGAAAGAAAGTTTGTTATGTTCAATTTCCACAAAGATTTGATGGAATAGACAGACACGATCGCTATGCCAACAGAAATACAGTCTTCTTTGATATTAACATGCGAGGTTTGGATGGAGTTCAGGGTCCTGTATATGTCGGCACAGGGTGTGTCTTTAGGAGGCAGGCTTTATATGGTTATGAACCCCCAAAAGGTCCTAAGCGCCCGAAAATGGTAAGCTGTGACTGTTGTCCATGCTTTGGACGTCGCAAGAAGCTTAAGAACTCTAAAAGTGGGGTAGATGGAGATGCTGCAGTGATGGAAGATGACAAGGAGCTACTAATGTCGCAAATGAATTTTGAAAAGAAATTTGGGCAGTCGTCAATTTTTGTTACCTCAACTTTGATGGAAGAAGGCGGTGTTCCTCCTTCCTCGAGTCCAGCAGCCCTGCTTAAGGAAGCAATTCATGTTATCAGTTGTGGTTATGAAGACAAAACCGAATGGGGTACTGAGTTGGGCTGGATTTACGGATCTATCACAGAGGATATTCTAACAGGTTTCAAGATGCATTGTCGTGGATGGAGATCTATATACTGCATGCCAAAGAGGCCTGCATTTAAGGGTACAGCTCCCATCAACTTGTCTGATCGGCTGAACCAGGTGCTTCGGTGGGCACTTGGATCCATTGAAATCTTTTTCAGCAACCACTGTCCTGTTTGGTATGGTTATAAGGGTGGGAAGCTAAAGTGGCTTGAAAGGTTTGCATATGTCAACACAACTGTCTATCCCTTCACTTCAATACCACTTCTCGCCTACTGTACCCTCCCTGCAATCTGCCTGCTCACGGATAAGTTTATCATGCCACCGATAAGCACTTTTGCAAGTCTCTTCTTCATTGCCTTGTTTCTTTCAATTTTTGCTACGGGTATTCTTGAGCTTAAATGGAGTGGAGTTAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTATTTCAGCTCATCTATTTGCTGTTGTACAAGGTCTATTGAAGGTTTTGGCTGGAATCGATACTAGCTTCACAGTTACATCCAAGGCAACAGATGACGAAGACTTTGGAGAATTATATGCCTTTAAATGGACAACTCTGCTAATCCCTCCAACAACTATTTTGATCATCAACCTTGTTGGGGTTGTTGCAGGAATATCAGATGCCATAAACAATGGCTATCAATCCTGGGGACCTCTATTTGGGAAGCTTTTCTTTGCCTTTTGGGTGATTGTTCATCTCTACCCATTCCTTAAGGGTCTGATGGGCCGACAAAACCGAACACCGACTATAGTCGTCATATGGTCCGTGCTGTTGGCTTCAATCTTCTCCTTGCTTTGGGTCCGAATTGATCCATTTGTGATGAAAACAAAGGGACCTGATACTAAGCAATGTGGACTAAATTGCTGA 3099 44.01 MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDEVGLTVDGDLFVACNECGFPACRPCYEYERREGSQQCPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDERNKHSHIAEAMLHGKMSYGRGPDDDENAQYGRTQPANGEFPLSSQGYGDQMLSSSLHKRVHPYPVSEPGSARWDEKREEGWKDRMDDWKLQQGNLGPEPDDVNDPDMAMIDAARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKISCYVSDDGASMLTFEAMSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKATKVPPEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGVQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKLKNSKSGVDGDAAVMEDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPVWYGYKGGKLKWLERFAYVNTTVYPFTSIPLLAYCTLPAICLLTDKFIMPPISTFASLFFIALFLSIFATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKVLAGIDTSFTVTSKATDDEDFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKQCGLNC 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1609822 1614309 - Lag0033757.1 Lac3g0229 600651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0229 1032 CDD mRING-HC-C4C4_CesA 35 85 - -
Lac3g0229 1032 Pfam Cellulose synthase 327 1026 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Lac3g0229 1032 FunFam Cellulose synthase 444 618 - -
Lac3g0229 1032 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 452 618 IPR029044 -
Lac3g0229 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Lac3g0229 1032 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 233 1001 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Lac3g0229 1032 SUPERFAMILY Nucleotide-diphospho-sugar transferases 340 856 IPR029044 -
Lac3g0229 1032 Pfam Zinc-binding RING-finger 27 103 IPR027934 -
Lac3g0229 1032 SUPERFAMILY RING/U-box 21 107 - -
Lac3g0229 1032 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Lac3g0229 1032 FunFam Cellulose synthase 19 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2418 Lac-Chr1:45617746 Lac3g0229 Lac-Chr3:1609822 0.00E+00 dispersed
Lac2g0004 Lac-Chr2:87483 Lac3g0229 Lac-Chr3:1609822 0.00E+00 dispersed
Lac3g0229 Lac-Chr3:1609822 Lac4g2655 Lac-Chr4:45532891 0.00E+00 dispersed
Lac3g0229 Lac-Chr3:1609822 Lac1g1247 Lac-Chr1:31898198 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0229 K10999 - csv:101214842 2065.43