Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac3g0242 | ATGACGAAATCCACGTCGCAACAGCTTGAGATTAGGGACTCGAACAACAATGTAAATAAAAATGTCGTAATGAAGACGAAAACAAAGCGAACTCGGAGGAGCGTCCCCAGAGATTCTCCTCCTCAACGAAGCTCTATTTACCGCGGCGTTACTAGGCATCGGTGGACGGGGAGATATGAAGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCGCAGAACAAAAAAGGCAGACAAGGTGCATACGACGATGAGGAAGCAGCAGCACATGCTTACGACCTTGCAGCATTGAAATACTGGGGACATGAAACCATTCTTAATTTTCCGTTAACGACGTACCAAAAAGAGCTGAAGGAAATGGAGGGCCAGTCCAGAGAAGAATACATTGGGTCGTTGAGAAGAAAAAGCAGTGGGTTTTCTCGGGGGGTTTCAAAATACAGAGGCGTTGCAAGACACCATCACAATGGAAGATGGGAAGCTCGGATTGGCAGGGTGTTTGGCAACAAATATCTCTATCTTGGAACATATGCGACGCAAGAAGAAGCAGCCACAGCGTACGATATCGCGGCCATAGAGTACCGTGGACTTAACGCCGTCACCAATTTCGACCTGAGCCGTTACATCAAGTGGCTAAAACCAAGCAACGACGTCGTTTACGAAAACAACCACGTCTTAACCGTCGATTCGATCCTCCCGAGCCCTAAACAAGAACTCGATCTAGGTCTCTTCCCGTCGGACCAAAATCAAACCAGCACCGATTCGACGATGGCGGAACCAATTGCCTTACCTCCGTCGCACCGATCGACCACCTCCACGTCGGCTCTCGGCCTCCTGCTCCAATCTTCCAAGTTCAAGGAAATGATGGAGATGAACTCGGCGACGGAGTGCCCGTCGACGCCGTCGTCGTCGGAACAGAACGAACGGCGGCGGTGTTTGTTTCCCGATGATGTTCAGACTTTCTTTGCCTGTGATGGGTCCGGATCTTACTGCTATGGAGAAGGTGATGATGCAATTTTTAGCGAATTCAATTCTCTTGTGCCGCCGCCGTTGTCGCATTACGATTTTGACGATTAG | 1074 | 49.26 | MTKSTSQQLEIRDSNNNVNKNVVMKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGHETILNFPLTTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVYENNHVLTVDSILPSPKQELDLGLFPSDQNQTSTDSTMAEPIALPPSHRSTTSTSALGLLLQSSKFKEMMEMNSATECPSTPSSSEQNERRRCLFPDDVQTFFACDGSGSYCYGEGDDAIFSEFNSLVPPPLSHYDFDD | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1715191 | 1718159 | + | Lag0033770.1 | Lac3g0242 | 600664 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac3g0242 | 357 | SMART | rav1_2 | 145 | 209 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac3g0242 | 357 | SMART | rav1_2 | 46 | 115 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac3g0242 | 357 | FunFam | AP2-like ethylene-responsive transcription factor | 45 | 111 | - | - | |
Lac3g0242 | 357 | Gene3D | AP2/ERF domain | 46 | 111 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac3g0242 | 357 | Gene3D | AP2/ERF domain | 144 | 205 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac3g0242 | 357 | CDD | AP2 | 144 | 205 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac3g0242 | 357 | PRINTS | Ethylene responsive element binding protein signature | 47 | 58 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac3g0242 | 357 | PRINTS | Ethylene responsive element binding protein signature | 185 | 205 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac3g0242 | 357 | ProSiteProfiles | AP2/ERF domain profile. | 46 | 109 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac3g0242 | 357 | FunFam | AP2-like ethylene-responsive transcription factor | 144 | 205 | - | - | |
Lac3g0242 | 357 | Pfam | AP2 domain | 144 | 195 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac3g0242 | 357 | SUPERFAMILY | DNA-binding domain | 144 | 205 | IPR016177 | GO:0003677(InterPro) | |
Lac3g0242 | 357 | ProSiteProfiles | AP2/ERF domain profile. | 145 | 203 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac3g0242 | 357 | SUPERFAMILY | DNA-binding domain | 45 | 110 | IPR016177 | GO:0003677(InterPro) | |
Lac3g0242 | 357 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 32 | 251 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac3g0242 | Lac-Chr3:1715191 | Lac4g2723 | Lac-Chr4:46172242 | 2.50E-115 | dispersed | |
Lac3g0242 | Lac-Chr3:1715191 | Lac8g0535 | Lac-Chr8:7699221 | 1.10E-78 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23557 | PF00847 | AP2 | 1.40E-09 | CL0081 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac3g0242 | K09285 | - | csv:101219103 | 626.32 |