Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0242 ATGACGAAATCCACGTCGCAACAGCTTGAGATTAGGGACTCGAACAACAATGTAAATAAAAATGTCGTAATGAAGACGAAAACAAAGCGAACTCGGAGGAGCGTCCCCAGAGATTCTCCTCCTCAACGAAGCTCTATTTACCGCGGCGTTACTAGGCATCGGTGGACGGGGAGATATGAAGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCGCAGAACAAAAAAGGCAGACAAGGTGCATACGACGATGAGGAAGCAGCAGCACATGCTTACGACCTTGCAGCATTGAAATACTGGGGACATGAAACCATTCTTAATTTTCCGTTAACGACGTACCAAAAAGAGCTGAAGGAAATGGAGGGCCAGTCCAGAGAAGAATACATTGGGTCGTTGAGAAGAAAAAGCAGTGGGTTTTCTCGGGGGGTTTCAAAATACAGAGGCGTTGCAAGACACCATCACAATGGAAGATGGGAAGCTCGGATTGGCAGGGTGTTTGGCAACAAATATCTCTATCTTGGAACATATGCGACGCAAGAAGAAGCAGCCACAGCGTACGATATCGCGGCCATAGAGTACCGTGGACTTAACGCCGTCACCAATTTCGACCTGAGCCGTTACATCAAGTGGCTAAAACCAAGCAACGACGTCGTTTACGAAAACAACCACGTCTTAACCGTCGATTCGATCCTCCCGAGCCCTAAACAAGAACTCGATCTAGGTCTCTTCCCGTCGGACCAAAATCAAACCAGCACCGATTCGACGATGGCGGAACCAATTGCCTTACCTCCGTCGCACCGATCGACCACCTCCACGTCGGCTCTCGGCCTCCTGCTCCAATCTTCCAAGTTCAAGGAAATGATGGAGATGAACTCGGCGACGGAGTGCCCGTCGACGCCGTCGTCGTCGGAACAGAACGAACGGCGGCGGTGTTTGTTTCCCGATGATGTTCAGACTTTCTTTGCCTGTGATGGGTCCGGATCTTACTGCTATGGAGAAGGTGATGATGCAATTTTTAGCGAATTCAATTCTCTTGTGCCGCCGCCGTTGTCGCATTACGATTTTGACGATTAG 1074 49.26 MTKSTSQQLEIRDSNNNVNKNVVMKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGHETILNFPLTTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVYENNHVLTVDSILPSPKQELDLGLFPSDQNQTSTDSTMAEPIALPPSHRSTTSTSALGLLLQSSKFKEMMEMNSATECPSTPSSSEQNERRRCLFPDDVQTFFACDGSGSYCYGEGDDAIFSEFNSLVPPPLSHYDFDD 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1715191 1718159 + Lag0033770.1 Lac3g0242 600664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0242 357 SMART rav1_2 145 209 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0242 357 SMART rav1_2 46 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0242 357 FunFam AP2-like ethylene-responsive transcription factor 45 111 - -
Lac3g0242 357 Gene3D AP2/ERF domain 46 111 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0242 357 Gene3D AP2/ERF domain 144 205 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0242 357 CDD AP2 144 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0242 357 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0242 357 PRINTS Ethylene responsive element binding protein signature 185 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0242 357 ProSiteProfiles AP2/ERF domain profile. 46 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0242 357 FunFam AP2-like ethylene-responsive transcription factor 144 205 - -
Lac3g0242 357 Pfam AP2 domain 144 195 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0242 357 SUPERFAMILY DNA-binding domain 144 205 IPR016177 GO:0003677(InterPro)
Lac3g0242 357 ProSiteProfiles AP2/ERF domain profile. 145 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0242 357 SUPERFAMILY DNA-binding domain 45 110 IPR016177 GO:0003677(InterPro)
Lac3g0242 357 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 32 251 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0242 Lac-Chr3:1715191 Lac4g2723 Lac-Chr4:46172242 2.50E-115 dispersed
Lac3g0242 Lac-Chr3:1715191 Lac8g0535 Lac-Chr8:7699221 1.10E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23557 PF00847 AP2 1.40E-09 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0242 K09285 - csv:101219103 626.32