Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0246 ATGCTCTTGAGGAACGAATACATGCTCTTCTTCTTTTTCTTTCTTCTCCATTTCTTCCCAGCTATGGTTCCTAAACTCTTCTGTTTCATCATCCTTCTCTCCTCTGCTTTCCTTTGCCTTTCCTATGAACCTCGAAACCCAGAAGTGGAAGCTCTGATTAATGTGAAGACGGCATTGAATGATCCTCACGGCGTGCTCAGCAATTGGGATGAGGACTCTGTGGACCCTTGCAGTTGGGCAATGATCACCTGTTCTCCTGAGAATCTCGTTATTGGACTAGGAGCTCCTAGCCAGTCTCTTTCCGGGAGCTTGTCTGGTGCGATTGGAAACCTCACAAATCTTCGCCAAGTGCTGCTGCAGAACAACAACATTTCCGGTCCAATTCCCATTGAACTTGGAACTCTTCCATTGCTTCAAACATTAGATCTCTCAAACAATCGGTTCTCTGGCCCAATACCAGCATCTTTTGGTCAGCTGAACGGTCTACGCTACCTGAGGGTGAACAATAATAGCTTGTCCGGGCCTTTCCCGGTGTCTTTGGCGAAAATCCCCCAGCTTGCTTTCTTGGACTTGTCATTTAACAATCTCAGTGGACCAGTGCCTGTGTTTCCAGCCAGAACATTCAATGTGGTGGGAAATCCGATGATTTGTGGAAGTAGTCCTAGTGAAGGTTGCTCTGGCTCAGCCAATGCGGTTCCTCTTTCTTTTTCTCTAGAATCATCCCCTGGAAGACTCAGGTCCAAAAGAATAGCAGTGGCACTCGGGGTCAGCCTAAGCTGTGCTTTTCTGATATTCCTAGCACTTGGAATTCTTTGGCACAAAAAAAATCACAAGACCAAAACCATCCTAGATATCAATGACAATCAAGAAGTTGGACTTGTGCGCTTAGGCAACCTCAGAAACTTCACTTTCAAAGAGCTCCAGTTAGCAACAGACCATTTTAGTTCCAAAAATATACTTGGGGCTGGAGGCTTTGGTAATGTGTACAAGGGAAAGCTAGGAAATGGGACTATGGTGGCAGTGAAACGGCTGAAAGATGTAACGGGTACCACTGGAGAGTCGCAGTTCCGCACAGAGTTGGAGATGATTAGCCTTGCAGTTCATCGCAATTTGCTTCGGTTAATTGGTTATTGTGCCACTTCTCACGAGAGGCTTTTGGTGTACCCATACATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGAAAACCAGCCTTGGACTGGAACACGAGGAAGAGAATAGCAATTGGAGCTGCAAGAGGTCTGCTGTATCTTCATGAGCAATGTGATCCTAAGATAATCCATAGAGATGTGAAGGCTGCCAATGTGCTTCTAGATGACTTCTGTGAAGCTGTAGTTGGTGATTTTGGACTTGCAAAGCTTCTTGACCATGCTGACTCTCATGTGACCACTGCTGTTCGTGGCACTGTCGGCCACATCGCTCCGGAGTATCTATCGACTGGCCAATCTTCTGAGAAGACTGACGTGTTTGGGTTTGGCATTCTTTTGATAGAGCTAATAACTGGAATGAGAGCTCTTGAATTTGGGAAAACAATCAACCAAAAAGGCGCCATGCTTGAGTGGGTGAAAAAGATACAACAGGATAAAAAAGTGGAATTGCTTGTGGACAGAGAGCTAGGCAACAACTATGATCAGATTGAAGTTGGGGAAATGTTGCAAGTGGCTCTTCTTTGCACTCAGTATTTACCTGCTCACCGTCCCAAGATGTCGGAGGTGGTCCGAATGCTTGAAGGGGATGGCCTTGTTGAGAAATGGGCTGCATCCCACACTCATAATGACTTAAATGTCAACCTCTTTCATTCACGGAACAGCTGCAAAAGTACATACAACCCCACAAATGCATTAAAGAATAATGGCAATGATCGAGATCATTCAAGCATGTTAAGTTTGACAATGGATGACGACGACGACGAGCGATCTTTAGACTCCTATGCCATGGAACTCTCCGGTCCAAGATAG 1980 45.76 MLLRNEYMLFFFFFLLHFFPAMVPKLFCFIILLSSAFLCLSYEPRNPEVEALINVKTALNDPHGVLSNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGSLSGAIGNLTNLRQVLLQNNNISGPIPIELGTLPLLQTLDLSNNRFSGPIPASFGQLNGLRYLRVNNNSLSGPFPVSLAKIPQLAFLDLSFNNLSGPVPVFPARTFNVVGNPMICGSSPSEGCSGSANAVPLSFSLESSPGRLRSKRIAVALGVSLSCAFLIFLALGILWHKKNHKTKTILDINDNQEVGLVRLGNLRNFTFKELQLATDHFSSKNILGAGGFGNVYKGKLGNGTMVAVKRLKDVTGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKTINQKGAMLEWVKKIQQDKKVELLVDRELGNNYDQIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLVEKWAASHTHNDLNVNLFHSRNSCKSTYNPTNALKNNGNDRDHSSMLSLTMDDDDDERSLDSYAMELSGPR 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1750316 1754404 + Lag0033774.1 Lac3g0246 600668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0246 659 Gene3D Ribonuclease Inhibitor 45 227 IPR032675 -
Lac3g0246 659 FunFam Somatic embryogenesis receptor-like kinase 1 391 603 - -
Lac3g0246 659 Pfam Leucine rich repeat 137 196 IPR001611 GO:0005515(InterPro)
Lac3g0246 659 MobiDBLite consensus disorder prediction 616 659 - -
Lac3g0246 659 Gene3D Phosphorylase Kinase; domain 1 283 390 - -
Lac3g0246 659 Gene3D Transferase(Phosphotransferase) domain 1 391 602 - -
Lac3g0246 659 Pfam Leucine Rich Repeat 113 135 IPR001611 GO:0005515(InterPro)
Lac3g0246 659 FunFam Somatic embryogenesis receptor kinase 1 282 390 - -
Lac3g0246 659 FunFam Putative LRR receptor-like serine/threonine-protein kinase 45 227 - -
Lac3g0246 659 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 26 659 - -
Lac3g0246 659 ProSiteProfiles Protein kinase domain profile. 314 589 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0246 659 MobiDBLite consensus disorder prediction 616 633 - -
Lac3g0246 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0246 659 Pfam Leucine rich repeat N-terminal domain 46 85 IPR013210 -
Lac3g0246 659 Pfam Protein tyrosine and serine/threonine kinase 317 583 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0246 659 SUPERFAMILY Protein kinase-like (PK-like) 295 584 IPR011009 -
Lac3g0246 659 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524(InterPro)
Lac3g0246 659 SUPERFAMILY L domain-like 46 294 - -
Lac3g0246 659 SMART serkin_6 314 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0246 Lac-Chr3:1750316 Lac8g2791 Lac-Chr8:45141079 3.30E-185 dispersed
Lac3g0246 Lac-Chr3:1750316 Lac13g0429 Lac-Chr13:3016255 2.40E-180 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86053 PF07714 PK_Tyr_Ser-Thr 3.70E-42 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0246 - - - 0.0