Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac3g0246 | ATGCTCTTGAGGAACGAATACATGCTCTTCTTCTTTTTCTTTCTTCTCCATTTCTTCCCAGCTATGGTTCCTAAACTCTTCTGTTTCATCATCCTTCTCTCCTCTGCTTTCCTTTGCCTTTCCTATGAACCTCGAAACCCAGAAGTGGAAGCTCTGATTAATGTGAAGACGGCATTGAATGATCCTCACGGCGTGCTCAGCAATTGGGATGAGGACTCTGTGGACCCTTGCAGTTGGGCAATGATCACCTGTTCTCCTGAGAATCTCGTTATTGGACTAGGAGCTCCTAGCCAGTCTCTTTCCGGGAGCTTGTCTGGTGCGATTGGAAACCTCACAAATCTTCGCCAAGTGCTGCTGCAGAACAACAACATTTCCGGTCCAATTCCCATTGAACTTGGAACTCTTCCATTGCTTCAAACATTAGATCTCTCAAACAATCGGTTCTCTGGCCCAATACCAGCATCTTTTGGTCAGCTGAACGGTCTACGCTACCTGAGGGTGAACAATAATAGCTTGTCCGGGCCTTTCCCGGTGTCTTTGGCGAAAATCCCCCAGCTTGCTTTCTTGGACTTGTCATTTAACAATCTCAGTGGACCAGTGCCTGTGTTTCCAGCCAGAACATTCAATGTGGTGGGAAATCCGATGATTTGTGGAAGTAGTCCTAGTGAAGGTTGCTCTGGCTCAGCCAATGCGGTTCCTCTTTCTTTTTCTCTAGAATCATCCCCTGGAAGACTCAGGTCCAAAAGAATAGCAGTGGCACTCGGGGTCAGCCTAAGCTGTGCTTTTCTGATATTCCTAGCACTTGGAATTCTTTGGCACAAAAAAAATCACAAGACCAAAACCATCCTAGATATCAATGACAATCAAGAAGTTGGACTTGTGCGCTTAGGCAACCTCAGAAACTTCACTTTCAAAGAGCTCCAGTTAGCAACAGACCATTTTAGTTCCAAAAATATACTTGGGGCTGGAGGCTTTGGTAATGTGTACAAGGGAAAGCTAGGAAATGGGACTATGGTGGCAGTGAAACGGCTGAAAGATGTAACGGGTACCACTGGAGAGTCGCAGTTCCGCACAGAGTTGGAGATGATTAGCCTTGCAGTTCATCGCAATTTGCTTCGGTTAATTGGTTATTGTGCCACTTCTCACGAGAGGCTTTTGGTGTACCCATACATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGAAAACCAGCCTTGGACTGGAACACGAGGAAGAGAATAGCAATTGGAGCTGCAAGAGGTCTGCTGTATCTTCATGAGCAATGTGATCCTAAGATAATCCATAGAGATGTGAAGGCTGCCAATGTGCTTCTAGATGACTTCTGTGAAGCTGTAGTTGGTGATTTTGGACTTGCAAAGCTTCTTGACCATGCTGACTCTCATGTGACCACTGCTGTTCGTGGCACTGTCGGCCACATCGCTCCGGAGTATCTATCGACTGGCCAATCTTCTGAGAAGACTGACGTGTTTGGGTTTGGCATTCTTTTGATAGAGCTAATAACTGGAATGAGAGCTCTTGAATTTGGGAAAACAATCAACCAAAAAGGCGCCATGCTTGAGTGGGTGAAAAAGATACAACAGGATAAAAAAGTGGAATTGCTTGTGGACAGAGAGCTAGGCAACAACTATGATCAGATTGAAGTTGGGGAAATGTTGCAAGTGGCTCTTCTTTGCACTCAGTATTTACCTGCTCACCGTCCCAAGATGTCGGAGGTGGTCCGAATGCTTGAAGGGGATGGCCTTGTTGAGAAATGGGCTGCATCCCACACTCATAATGACTTAAATGTCAACCTCTTTCATTCACGGAACAGCTGCAAAAGTACATACAACCCCACAAATGCATTAAAGAATAATGGCAATGATCGAGATCATTCAAGCATGTTAAGTTTGACAATGGATGACGACGACGACGAGCGATCTTTAGACTCCTATGCCATGGAACTCTCCGGTCCAAGATAG | 1980 | 45.76 | MLLRNEYMLFFFFFLLHFFPAMVPKLFCFIILLSSAFLCLSYEPRNPEVEALINVKTALNDPHGVLSNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGSLSGAIGNLTNLRQVLLQNNNISGPIPIELGTLPLLQTLDLSNNRFSGPIPASFGQLNGLRYLRVNNNSLSGPFPVSLAKIPQLAFLDLSFNNLSGPVPVFPARTFNVVGNPMICGSSPSEGCSGSANAVPLSFSLESSPGRLRSKRIAVALGVSLSCAFLIFLALGILWHKKNHKTKTILDINDNQEVGLVRLGNLRNFTFKELQLATDHFSSKNILGAGGFGNVYKGKLGNGTMVAVKRLKDVTGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKTINQKGAMLEWVKKIQQDKKVELLVDRELGNNYDQIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLVEKWAASHTHNDLNVNLFHSRNSCKSTYNPTNALKNNGNDRDHSSMLSLTMDDDDDERSLDSYAMELSGPR | 659 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1750316 | 1754404 | + | Lag0033774.1 | Lac3g0246 | 600668 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac3g0246 | 659 | Gene3D | Ribonuclease Inhibitor | 45 | 227 | IPR032675 | - | |
Lac3g0246 | 659 | FunFam | Somatic embryogenesis receptor-like kinase 1 | 391 | 603 | - | - | |
Lac3g0246 | 659 | Pfam | Leucine rich repeat | 137 | 196 | IPR001611 | GO:0005515(InterPro) | |
Lac3g0246 | 659 | MobiDBLite | consensus disorder prediction | 616 | 659 | - | - | |
Lac3g0246 | 659 | Gene3D | Phosphorylase Kinase; domain 1 | 283 | 390 | - | - | |
Lac3g0246 | 659 | Gene3D | Transferase(Phosphotransferase) domain 1 | 391 | 602 | - | - | |
Lac3g0246 | 659 | Pfam | Leucine Rich Repeat | 113 | 135 | IPR001611 | GO:0005515(InterPro) | |
Lac3g0246 | 659 | FunFam | Somatic embryogenesis receptor kinase 1 | 282 | 390 | - | - | |
Lac3g0246 | 659 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 45 | 227 | - | - | |
Lac3g0246 | 659 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 26 | 659 | - | - | |
Lac3g0246 | 659 | ProSiteProfiles | Protein kinase domain profile. | 314 | 589 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac3g0246 | 659 | MobiDBLite | consensus disorder prediction | 616 | 633 | - | - | |
Lac3g0246 | 659 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 433 | 445 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac3g0246 | 659 | Pfam | Leucine rich repeat N-terminal domain | 46 | 85 | IPR013210 | - | |
Lac3g0246 | 659 | Pfam | Protein tyrosine and serine/threonine kinase | 317 | 583 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac3g0246 | 659 | SUPERFAMILY | Protein kinase-like (PK-like) | 295 | 584 | IPR011009 | - | |
Lac3g0246 | 659 | ProSitePatterns | Protein kinases ATP-binding region signature. | 320 | 342 | IPR017441 | GO:0005524(InterPro) | |
Lac3g0246 | 659 | SUPERFAMILY | L domain-like | 46 | 294 | - | - | |
Lac3g0246 | 659 | SMART | serkin_6 | 314 | 583 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac3g0246 | Lac-Chr3:1750316 | Lac8g2791 | Lac-Chr8:45141079 | 3.30E-185 | dispersed | |
Lac3g0246 | Lac-Chr3:1750316 | Lac13g0429 | Lac-Chr13:3016255 | 2.40E-180 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86053 | PF07714 | PK_Tyr_Ser-Thr | 3.70E-42 | CL0016 | Lac | PK |
Pathway information
