Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0268 ATGACTGAGCGATGGCACAGCGCCACCTTCAAGTCACCAACACAGTGTTGCGAGAAGATCGATGAAAAGGGTCAAGAGTCAAGAGGGGAGCTCATAAAAGTCCAAAATCATTCTGAAGGTGGGAACTGGAGGCGCTTCTTTCTTCTGCTTATGGGCATGGAATTGAGGAAGGAAAAGCTTGTTAGGTTTTATTCTGATCACAAAAAACATAAGAAATCTGCCATTGGAAACAACAATGAAGCAGTGCAACTTGAGAAGTCATCATCAAAATACTATATTCCGTCGTCAACATTCTTAATACCTGACAATGGACTAGGGGGCAGCAAAAGTAAATTTGCCGAAACTTTTAGAACTGAGAAGTCCAAGGTGTTTCCAGAGGACCATGAACCATGGAGCAAGAGAATACTGGACCCTGGTAGCAAAATTGTTTTGAAATGGAACCGGGTGTTCATTTGCTCATGCTTATTGGCACTCTTTGTTGACCCGCTATTTTTCTATCTTCTGCACATGATTATAAAGTTCAGAACAGCTTATGTTGCTCCTAGCTCTCGAGTTTTTGGGAGAGGTGAGCTTGTGATGGATTCAAAGATGATAGCAAAGAGGTATATTAGATCTGACTTTTTTGTTGATCTAATTGCCACCCTGCCTCTTCCTCAGATTGTCATCTGGTTCATCATACCTGCAACAAGAAGCCGTCTAACTGATCATAAAAACAATGCTCTTGCACTTATTGTTCTGCTTCAATATATTCCAAGATTATATTTGATTTTCCCTCTAAGTTCAGAAATCATCAAAGCAAATGGAGTTGTTACAAAGACAGCTTGGGCAGGAGCTGCTTATAATCTTCTACTCTATATGTTGGCTAGCCATGTTCTCGGTGCTACATGGTATTTGTTGTCAGTTGATAGATATACATCATGCTGGAAATCATTTTGTAGGAAGAAGGAATATAATCCACTAGAATGCAACCTAACTTTTTTTGATTGCGATACATTTAACCTTAATGATCGCAATACATGGGCAAATAGTACACTTGTTTTTGACAAATGTGGCCCTGATGGAATTTTCAAGTATGGCATTTTTGGGAATGCAATGTCAAAGAATGTTGTCTCTTCAAGCTTTATTGAAAAGTACTTCTATTGTTTGTGGTGGGGCTTGCAAAACCTGAGTTCATATGGACAGAATTTGGAAACAACCACTTTCATTGGTGAGACACTGTTTGCTGTGCTTATTGCCATCTTAGGCCTTGTATTATTTGCCCATCTGATTGGGAATATGCAGACATATCTGCAATCCCTCACTGTGAGGCTTGAAGAATGGAGACTAAAGCGAAGAGACACTGAAGAGTGGATGAGACATCGTCAACTCCCTGAAGACTTGAAACGACGTGTTCGACGGTTTGTACAATATAAGTGGGTAGCAACTCGAGGAGTTGATGAAGAAGCCATCTTGCAGAGCTTGCCTGCTGATCTTCGACGAGATATTCAGTGCCACCTATGTCTAGATCTTGTCCGAAGAGTCCCTTTCTTTGCGCAGATGGATGATCAGCTACTTGATGCAATATGTGAACGCCTAGTATCCTCCTTGAGCACCGAAGGTACCTATATTGTCCGAGAGGGTGACCCAGTAACAGAGATGCTGTTCATTATCCGAGGCAGATTGGAGAGTTCTACTACAAACGGAGGTCGTTCTGGTTTCTTCAACTCCATAATGTTGCGTCCTGGAGACTTTTGTGGGGAGGAACTACTTTCTTGGGCCTTGCACCCAAAATCCACCACCAACTTGCCCTCCTCAACTAGAACAGTCAGAGCGCTCAATGAAGTTGAAGCTTTTGCCCTCCGCGCTGAAGATCTTAAATTTGTGGCCAACCAATTTAGACGTCTGCACAGTAAAAAGTTGCAGCACACATTCCGCTTTTACTCTCATCACTGGAGAACGTGGGCAGCTTGCTTTATTCAGGCTGCTTGGCGTCGCCATAAGAAAAGGATGATGGCAAAGGATCTCTTGATGAAGGAATCATTTACATTATCTGAAGAAGTGGCTGATGAAACTGGCCAAGGAGAAGGGGAACAATTTTCTGTTGTTTCGAATCCTTCTCAGACAAAAATGTATCTGGATGTAACCTTACTGGCTTCAAGGTTTGCTGCAAACACAAGGAGAGGTGCTCAGAGAATGAAAGATGACTTGCCAAAGTTACAGAAGCCCGATGAACCCGACTTTTCCATTGAGCCGGATAGATGA 2241 42.35 MTERWHSATFKSPTQCCEKIDEKGQESRGELIKVQNHSEGGNWRRFFLLLMGMELRKEKLVRFYSDHKKHKKSAIGNNNEAVQLEKSSSKYYIPSSTFLIPDNGLGGSKSKFAETFRTEKSKVFPEDHEPWSKRILDPGSKIVLKWNRVFICSCLLALFVDPLFFYLLHMIIKFRTAYVAPSSRVFGRGELVMDSKMIAKRYIRSDFFVDLIATLPLPQIVIWFIIPATRSRLTDHKNNALALIVLLQYIPRLYLIFPLSSEIIKANGVVTKTAWAGAAYNLLLYMLASHVLGATWYLLSVDRYTSCWKSFCRKKEYNPLECNLTFFDCDTFNLNDRNTWANSTLVFDKCGPDGIFKYGIFGNAMSKNVVSSSFIEKYFYCLWWGLQNLSSYGQNLETTTFIGETLFAVLIAILGLVLFAHLIGNMQTYLQSLTVRLEEWRLKRRDTEEWMRHRQLPEDLKRRVRRFVQYKWVATRGVDEEAILQSLPADLRRDIQCHLCLDLVRRVPFFAQMDDQLLDAICERLVSSLSTEGTYIVREGDPVTEMLFIIRGRLESSTTNGGRSGFFNSIMLRPGDFCGEELLSWALHPKSTTNLPSSTRTVRALNEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRHKKRMMAKDLLMKESFTLSEEVADETGQGEGEQFSVVSNPSQTKMYLDVTLLASRFAANTRRGAQRMKDDLPKLQKPDEPDFSIEPDR 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1908412 1914859 + Lag0033796.1 Lac3g0268 600690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0268 746 ProSiteProfiles cAMP/cGMP binding motif profile. 509 593 IPR000595 -
Lac3g0268 746 Pfam Ion transport protein 164 436 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac3g0268 746 Pfam Cyclic nucleotide-binding domain 532 621 IPR000595 -
Lac3g0268 746 PRINTS EAG/ELK/ERG potassium channel family signature 287 297 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac3g0268 746 PRINTS EAG/ELK/ERG potassium channel family signature 404 415 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac3g0268 746 PRINTS EAG/ELK/ERG potassium channel family signature 378 395 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac3g0268 746 PRINTS EAG/ELK/ERG potassium channel family signature 422 431 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac3g0268 746 PRINTS EAG/ELK/ERG potassium channel family signature 170 179 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac3g0268 746 PRINTS EAG/ELK/ERG potassium channel family signature 472 479 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac3g0268 746 Gene3D Jelly Rolls 507 627 IPR014710 -
Lac3g0268 746 SUPERFAMILY Voltage-gated potassium channels 138 431 - -
Lac3g0268 746 FunFam Cyclic nucleotide-gated ion channel 1 507 625 - -
Lac3g0268 746 Gene3D - 147 434 - -
Lac3g0268 746 CDD CAP_ED 509 640 IPR000595 -
Lac3g0268 746 SMART cnmp_10 509 640 IPR000595 -
Lac3g0268 746 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 165 726 - -
Lac3g0268 746 Gene3D Helix hairpin bin 437 500 - -
Lac3g0268 746 FunFam Cyclic nucleotide-gated ion channel 1 436 500 - -
Lac3g0268 746 MobiDBLite consensus disorder prediction 720 746 - -
Lac3g0268 746 SUPERFAMILY cAMP-binding domain-like 439 631 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0024 Lac-Chr10:317598 Lac3g0268 Lac-Chr3:1908412 3.30E-42 dispersed
Lac2g0692 Lac-Chr2:5204642 Lac3g0268 Lac-Chr3:1908412 5.80E-276 dispersed
Lac3g0268 Lac-Chr3:1908412 Lac8g0338 Lac-Chr8:4106672 1.50E-234 dispersed
Lac3g0268 Lac-Chr3:1908412 Lac9g2595 Lac-Chr9:44480023 1.70E-206 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0268 K27629 - csv:101218643 1335.47