Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0282 ATGGGGATTGAGGGTGAAACTCTTGTAAAGGGTTTCGGTGGCGGATGGGGCGTCGTCGCTAAACCATGCGACTCTTGCAAGACTGGCCCTGCCGCTGTTTACTGCCGACCAGACTCGGCTTTTCTCTGCCTCAACTGCGACACCAAAATTCACGGCGCTAATAAGCTCGCCTCTCGCCACGAGCGCGTCTGGATGTGCGAGGTCTGTGAACAAGCTCCTGCCGTCGTCATGTGCAAGGCCGATGCTGCGGCTCTCTGTGTCTCCTGCGACGCCGATATTCACTCCGCTAACCCACTCGCCCGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACTCGGTCGAGTCAGTCGTCAGGCCCTCTTCGGTTTTCAATTTTCTTTTGCCTACTGAAACCAACGCCAGTGGCTGCGACGGCGCCCATCACCACCAGGAGGTGGAGGTTGCCTCTTGGCTTTTGTCCAACCCGCCTTTCAACTCTAAGCTCGTTGACGGCCCTGAAATCAAGCCCCCTGCTGATCATATGTTCTTCACTGAAATGGATTCTTTTATCGATTTCGATTACCCAAATCCAGTCAACAACAACAGCGCAATCAACGACAGCGTCGTCCCCGTTCAGACGAAGCCACTCTCTTCGCCGGTGATCAACCATACCCACTCCCCTGAAAATTGCTACGACATCGACTTTTGCAGATCCAAGCTCAATTCATTCCGCTATCAACCTCAATCCCTGAGCCACAGTGTTTCCTCTTCTTCCCTAGATGTTGGAGTTGTTCCAGAAGGGAATTCGATGTCGGAGATATCGTACCCGTTGGGTCAAACGGTGAGCAGCGGCGCGGATTCGAGTTTACCGATTTCGGGATCTGGCAACCAAGCGACTCAATTAGTTGGAATCGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGAAAGTTCGAGAAGACAATCCGGTACGCCTCGAGAAAAGCTTATGCGGAAACCCGACCCAGAATCAAAGGCCGCTTCGCAAAACGGACTGATATGCTATCAGAGGTGGATGAAATCTATGGGTCGGCTGCTTCGTCTGAGTTCTTGGCGGACTTCCAATACGGCGTCGTACCATCGTTTTGA 1125 53.33 MGIEGETLVKGFGGGWGVVAKPCDSCKTGPAAVYCRPDSAFLCLNCDTKIHGANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVSCDADIHSANPLARRHERVPVEPFFDSVESVVRPSSVFNFLLPTETNASGCDGAHHHQEVEVASWLLSNPPFNSKLVDGPEIKPPADHMFFTEMDSFIDFDYPNPVNNNSAINDSVVPVQTKPLSSPVINHTHSPENCYDIDFCRSKLNSFRYQPQSLSHSVSSSSLDVGVVPEGNSMSEISYPLGQTVSSGADSSLPISGSGNQATQLVGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDMLSEVDEIYGSAASSEFLADFQYGVVPSF 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2014793 2016014 - Lag0033810.1 Lac3g0282 600704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0282 374 CDD Bbox1_BBX-like 66 108 IPR049808 -
Lac3g0282 374 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 16 359 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Lac3g0282 374 CDD Bbox1_BBX-like 22 65 IPR049808 -
Lac3g0282 374 ProSiteProfiles CCT domain profile. 301 343 IPR010402 GO:0005515(InterPro)
Lac3g0282 374 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270(InterPro)
Lac3g0282 374 Pfam CCT motif 301 343 IPR010402 GO:0005515(InterPro)
Lac3g0282 374 Pfam B-box zinc finger 62 108 IPR000315 GO:0008270(InterPro)
Lac3g0282 374 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270(InterPro)
Lac3g0282 374 SMART bboxneu5 18 65 IPR000315 GO:0008270(InterPro)
Lac3g0282 374 SMART bboxneu5 66 108 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0282 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0282 Lac-Chr3:2014793 Lac6g0573 Lac-Chr6:4791925 2.70E-67 dispersed
Lac3g0282 Lac-Chr3:2014793 Lac13g0498 Lac-Chr13:3642787 3.30E-09 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0573 . 1 339 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 1.2e-83 307.8
Lac3g0282 . 5 374 C2C2-CO-like Transcription Factor Family AT5G57660 51.1 8.2e-66 248.4
Lac9g1940 . 1 397 C2C2-CO-like Transcription Factor Family AT3G07650 50.6 3.1e-92 336.3
Lac12g0415 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 53.6 2.0e-86 317.0
Lac12g0415 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.8 1.6e-83 307.4
Lac12g0415 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.8 1.6e-83 307.4
Lac4g1427 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 56.1 3.7e-52 203.0
Lac9g1735 . 15 216 C2C2-CO-like Transcription Factor Family AT1G75540 51.6 3.0e-46 183.3
Lac5g2128 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.6 6.4e-56 214.5
Lac1g2983 . 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 70.5 9.0e-50 194.1
Lac9g1749 . 1 197 C2C2-CO-like Transcription Factor Family AT2G21320 51.3 6.4e-48 188.0
Lac5g2128 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 9.5e-58 220.7
Lac9g1749 . 1 196 C2C2-CO-like Transcription Factor Family AT4G38960 55.1 1.3e-51 200.3
Lac1g2983 . 1 164 C2C2-CO-like Transcription Factor Family AT4G38960 59.8 6.2e-49 191.4
Lac4g1427 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.1 5.8e-55 211.8
Lac6g0470 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 52.7 2.0e-47 186.8
Lac9g1735 . 15 209 C2C2-CO-like Transcription Factor Family AT4G39070 54.2 1.8e-43 173.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003973 3 1 1 3 2 1 2 1 1 2 1 1 2 2 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23560 PF00643 zf-B_box 6.30E-07 No_clan Lac TF