Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0282 ATGGGGATTGAGGGTGAAACTCTTGTAAAGGGTTTCGGTGGCGGATGGGGCGTCGTCGCTAAACCATGCGACTCTTGCAAGACTGGCCCTGCCGCTGTTTACTGCCGACCAGACTCGGCTTTTCTCTGCCTCAACTGCGACACCAAAATTCACGGCGCTAATAAGCTCGCCTCTCGCCACGAGCGCGTCTGGATGTGCGAGGTCTGTGAACAAGCTCCTGCCGTCGTCATGTGCAAGGCCGATGCTGCGGCTCTCTGTGTCTCCTGCGACGCCGATATTCACTCCGCTAACCCACTCGCCCGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACTCGGTCGAGTCAGTCGTCAGGCCCTCTTCGGTTTTCAATTTTCTTTTGCCTACTGAAACCAACGCCAGTGGCTGCGACGGCGCCCATCACCACCAGGAGGTGGAGGTTGCCTCTTGGCTTTTGTCCAACCCGCCTTTCAACTCTAAGCTCGTTGACGGCCCTGAAATCAAGCCCCCTGCTGATCATATGTTCTTCACTGAAATGGATTCTTTTATCGATTTCGATTACCCAAATCCAGTCAACAACAACAGCGCAATCAACGACAGCGTCGTCCCCGTTCAGACGAAGCCACTCTCTTCGCCGGTGATCAACCATACCCACTCCCCTGAAAATTGCTACGACATCGACTTTTGCAGATCCAAGCTCAATTCATTCCGCTATCAACCTCAATCCCTGAGCCACAGTGTTTCCTCTTCTTCCCTAGATGTTGGAGTTGTTCCAGAAGGGAATTCGATGTCGGAGATATCGTACCCGTTGGGTCAAACGGTGAGCAGCGGCGCGGATTCGAGTTTACCGATTTCGGGATCTGGCAACCAAGCGACTCAATTAGTTGGAATCGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGAAAGTTCGAGAAGACAATCCGGTACGCCTCGAGAAAAGCTTATGCGGAAACCCGACCCAGAATCAAAGGCCGCTTCGCAAAACGGACTGATATGCTATCAGAGGTGGATGAAATCTATGGGTCGGCTGCTTCGTCTGAGTTCTTGGCGGACTTCCAATACGGCGTCGTACCATCGTTTTGA 1125 53.33 MGIEGETLVKGFGGGWGVVAKPCDSCKTGPAAVYCRPDSAFLCLNCDTKIHGANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVSCDADIHSANPLARRHERVPVEPFFDSVESVVRPSSVFNFLLPTETNASGCDGAHHHQEVEVASWLLSNPPFNSKLVDGPEIKPPADHMFFTEMDSFIDFDYPNPVNNNSAINDSVVPVQTKPLSSPVINHTHSPENCYDIDFCRSKLNSFRYQPQSLSHSVSSSSLDVGVVPEGNSMSEISYPLGQTVSSGADSSLPISGSGNQATQLVGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDMLSEVDEIYGSAASSEFLADFQYGVVPSF 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2014793 2016014 - Lag0033810.1 Lac3g0282 600704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0282 374 CDD Bbox1_BBX-like 66 108 IPR049808 -
Lac3g0282 374 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 16 359 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Lac3g0282 374 CDD Bbox1_BBX-like 22 65 IPR049808 -
Lac3g0282 374 ProSiteProfiles CCT domain profile. 301 343 IPR010402 GO:0005515(InterPro)
Lac3g0282 374 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270(InterPro)
Lac3g0282 374 Pfam CCT motif 301 343 IPR010402 GO:0005515(InterPro)
Lac3g0282 374 Pfam B-box zinc finger 62 108 IPR000315 GO:0008270(InterPro)
Lac3g0282 374 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270(InterPro)
Lac3g0282 374 SMART bboxneu5 18 65 IPR000315 GO:0008270(InterPro)
Lac3g0282 374 SMART bboxneu5 66 108 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0282 Lac-Chr3:2014793 Lac6g0573 Lac-Chr6:4791925 2.70E-67 dispersed
Lac3g0282 Lac-Chr3:2014793 Lac13g0498 Lac-Chr13:3642787 3.30E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23560 PF00643 zf-B_box 6.30E-07 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0282 - - - 0.0