Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0301 ATGCAGCGGCAGACAAGGTATATGGAGAGGACAAACTCCATGAGGGAGAAAAGGGGCTTGGAGGGTGGAGAAGATGAGCTGCCAGAGCGAAAGCGACCAGCTCTAGCTAGTGTGATTGTAGAAGCCCTGAAGGTGGATAGTTTACAGAAGCTCTGTTCATCTTTGGAACCAATACTCCGTAGAGTGGTTAGTGAAGAAGTGGAACGTGCTTTGGCTAAGATAGGTCCTGCTAGAATTACTGGAAGGTCTTCTCCTAAAAGGATTGAAGGTCCTGATGGAAGAAACTTGCAACTGCACTTTAGGTCTAGATTGTCTCTTCCCCTATTCACTGGAGGGAAAGTGGAAGGTGAACAGGGTGCAGCAATCCATGTCGTTTTGGTTGATGCCGACACAGGCCATGTAGTAACGTCAGGACCTGAAGCCTTGACAAAATTGGACATTGTGGTACTTGAAGGTGATTTTAACAATGAAGATGATGAAGATTGGACGGAGGAAGAATTTGAAAGTCATGTAGTCAAAGAGCGTGAAGGAAAGAGGCCTCTATTGACTGGTGATCTGCAGGTTTCCCTCAAGGAAGGTATTGGAACACTGGGGGATTTGACCTTCACTGATAACTCAAGTTGGATTAGGAGCAGAAAGTTCAGACTTGGGTTAAAGGTGTCTTCAGGATTTTGTGAAGGTGTACGTATTCGTGAAGCAAAAACTGAAGCTTTTACAGTTAAAGATCATCGAGGAGAATTGTATAAAAAACATTACCCACCTGCATTAAACGATGAGGTGTGGAGATTGGAAAAAATAGGAAAGGATGGTTCATTTCACAAACGGCTAAACAAAAAGGGAATATTCTCCGTTGAAGACTTTCTTCGAATGGTGGTTCGCGATTCTCAAGGACTACGGAGTATCCTTGGAAGTGGTATGTCAAATAAGATGTGGGAAGCTCTTTTAGAGCATGCTAAAACCTGTGTCCTGAGCGGAAAGCTGTATATTTATTACCCAGAGGAAACAAGAAATGTTGGTGTTGTTTTTAACAATATCTACGAGCTCAATGGCCTGATTACAGGGGAACAATACTTTTCTGCTGATTCTCTGTCCGACAGCCAGAAGGTTTATGTAGATACACTAGTGAACAAAGCATATGAAAATTGGAATCAAGTTGTAGAGTACGACGGAAAATCACTTTTGAGCTCTAAGCAGCCTAAGAAGACCAATGCATCCCGAAATGACTTTCAAGGAGGTCATCTTGATCTTTCTAATACTCTAGATCATGGGTCACTGTCCCGCATGCCAGTACCGGTTCAGCCTCAGCAACCTGTAGTGGATTCAGGGCTCTCGGTTGCAGGGTATAATGATAATACAGCCACAAGATATTCAACCCAGCCTCAGTTTATGAATTCAACTTCTCGACCCCAGTTTGATAATTCTACGTTTACTCCTAATGAGTTGATCGGCAATTCTAACCAAGTTCATATCACAAGAAATGACAATAGTGCTTTTGGTTTGGCTCTTGGTCCTCCACAAGCATCATCTTCAGGGTTTCAGGCGCTTGGTTCTTCTATTCAGGAATCTAATATGAATCCATTTGACTGGTCAAACAATAGAGACAAAGGAGTTGACGACTTCTTTTCAGAGGATGAGATTCGTATGAGAAGTCATGAAATGCTTGAAAATGAAGATATGCAACATTTGTTGCGAATGTTTAGCATGGGAGGGCATACCTCTGTTAACGTCCATGATGAGGGATTTTCATTCCCATCATTTATGCCTTCACCAATGCCAAGTTTTGATGATCGCAACCGTTCTGGAAAAGCTGTGGTAGGTTGGTTGAAGATCAAAGCTGCAATGAGGTGGGGCTTCTTCATCAGGAAGAAAGCAGCCGAGAGACGTGCACAGATTGTTGAGTTGGATGAGGAATAG 1914 43.0 MQRQTRYMERTNSMREKRGLEGGEDELPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKIGPARITGRSSPKRIEGPDGRNLQLHFRSRLSLPLFTGGKVEGEQGAAIHVVLVDADTGHVVTSGPEALTKLDIVVLEGDFNNEDDEDWTEEEFESHVVKEREGKRPLLTGDLQVSLKEGIGTLGDLTFTDNSSWIRSRKFRLGLKVSSGFCEGVRIREAKTEAFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKKGIFSVEDFLRMVVRDSQGLRSILGSGMSNKMWEALLEHAKTCVLSGKLYIYYPEETRNVGVVFNNIYELNGLITGEQYFSADSLSDSQKVYVDTLVNKAYENWNQVVEYDGKSLLSSKQPKKTNASRNDFQGGHLDLSNTLDHGSLSRMPVPVQPQQPVVDSGLSVAGYNDNTATRYSTQPQFMNSTSRPQFDNSTFTPNELIGNSNQVHITRNDNSAFGLALGPPQASSSGFQALGSSIQESNMNPFDWSNNRDKGVDDFFSEDEIRMRSHEMLENEDMQHLLRMFSMGGHTSVNVHDEGFSFPSFMPSPMPSFDDRNRSGKAVVGWLKIKAAMRWGFFIRKKAAERRAQIVELDEE 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2147516 2155259 + Lag0033829.1 Lac3g0301 600723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0301 637 PANTHER OS02G0177800 PROTEIN 15 628 IPR012416 GO:0003700(PANTHER)|GO:0005516(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0080142(PANTHER)
Lac3g0301 637 Pfam Calmodulin binding protein-like N-terminal domain 96 243 IPR046831 -
Lac3g0301 637 MobiDBLite consensus disorder prediction 9 28 - -
Lac3g0301 637 MobiDBLite consensus disorder prediction 1 28 - -
Lac3g0301 637 Pfam Calmodulin binding protein central domain 255 321 IPR046830 -
Lac3g0301 637 Pfam Calmodulin binding protein C-terminal domain 326 388 IPR046829 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0248 Lac-Chr10:1933098 Lac3g0301 Lac-Chr3:2147516 3.90E-89 dispersed
Lac3g0301 Lac-Chr3:2147516 Lac3g0675 Lac-Chr3:5250577 5.00E-90 dispersed
Lac3g0301 Lac-Chr3:2147516 Lac3g2904 Lac-Chr3:46407289 5.10E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0301 - - - 0.0