Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0308 ATGGCAGCCCTCCAGATCCATGGCACCGAAACCGAAATCTCTGCCGAGTTCCTTATAGCTCGAATCATCGATCTCCATGAAAGCATCTCAAAGCTCGAAACCCTAAAGCCCTGCAAGAAAGTGAACACCCTCTTCACCAACCTCGTCAACTTATGCATCTTACCTTCTTCCATAGACGTTTCCACATTGCCACACCATTTACAAGCCATTCGCGAGAGCCTCATGGTTCTGTGCGGCCGAGCCGAGGGCCTACTTGAGTTCGAATTCTCGACCTTGCTCGGAAAAATCCCCAAACCTCTCAACAATCTCACTCTATTTCCATATTACCAGAACTACATCAAATTAGCCCACCTCGAACACAAGATTTTGAATGACAATGGAGTTGTGAATCCAAAAAAGGTAGCTTTTGTGGGATCGGGTCCTTTGCCTCTAACTTCCATTATCATGGCCATGCAGCACATGAAGACCACGTATTTCGATAATTACGACATTGACAGCAAGGCAAATGACGTGGCGAGGAAGATGGTGGCGTCGGATGCTGAGCTGGAGGGAAGAATGAAGTTTTGGACGAGAGATATTGTTGAGGTAAAGGAAGAGCTTGAGGGATATGATTGTGTGTTTTTGGCAGCTCTTGTAGGGATGAAGAAGGAAGAAAAAGTGAAGATTTTAGGGCATTTGAGAAAGTATATGAAAGAAGGTGGGATTTTGGTTGTGAGAAGTGCTAAAGGAGCTAGAGCATTTTTGTACCCTGTGGTTGAGCTTCATGATCTGGTCGGCTTTGAAGTTCTCTCTATTTTTCATCCCACTGATGATGTTGTCAACTCGGTTCTCTTAGCTCGCAAGCCTATAATTATATGA 858 44.87 MAALQIHGTETEISAEFLIARIIDLHESISKLETLKPCKKVNTLFTNLVNLCILPSSIDVSTLPHHLQAIRESLMVLCGRAEGLLEFEFSTLLGKIPKPLNNLTLFPYYQNYIKLAHLEHKILNDNGVVNPKKVAFVGSGPLPLTSIIMAMQHMKTTYFDNYDIDSKANDVARKMVASDAELEGRMKFWTRDIVEVKEELEGYDCVFLAALVGMKKEEKVKILGHLRKYMKEGGILVVRSAKGARAFLYPVVELHDLVGFEVLSIFHPTDDVVNSVLLARKPIII 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2184560 2185417 - Lag0033836.1 Lac3g0308 600730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0308 285 CDD AdoMet_MTases 163 238 - -
Lac3g0308 285 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 117 282 IPR029063 -
Lac3g0308 285 PANTHER NICOTIANAMINE SYNTHASE 3 12 282 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lac3g0308 285 Pfam Nicotianamine synthase protein 15 282 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lac3g0308 285 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 10 285 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lac3g0308 285 Gene3D Vaccinia Virus protein VP39 15 282 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0308 Lac-Chr3:2184560 Lac3g3011 Lac-Chr3:48185302 1.10E-65 dispersed
Lac3g0308 Lac-Chr3:2184560 Lac6g2538 Lac-Chr6:43167758 8.90E-71 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0308 K05953 - csv:101209464 478.789