Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0310 ATGGCGGCGCCCGATCCCTCACCGGAATTCATATTCCGGTCAAAGCTCCCGGACATCACCATCCCCAACCACCTCCCCTTGCACACATATTGCTTCGAAAAGATCTCCGAATTCAAACACCGTCCATGTCTGATCAACGGCGCCACCGGCGACACCTACACCTACGGCCAAGTCCACGCAACAGCCCGCCGAGTCGCCGCCGGCCTCCACAAGCTCGGCATCGGAAAAGGCGACGTCATCATGCTCCTCCTCCAAAACAGCCCACAGTTCGTTTTAGCCTTCCTCGGCGCCTCCTATATCGGCGCCACCGCCACCATGGCGAACCCGTTCTTCACGCCGCCGGAGATCGCGAAACACGCGGCGTCCTCCGGCGCCAAGCTGATCATAACCCAAGCCGCCTTCGCCGAGAAAGTGAAGAACCTCTCCGACGAAAACGATGCGATCGTCGAAGTCATATACATCGACCCTCCGCCGGACGGAGGATCTCATTTTTCGTCGTTGACCGATGACGCGAAAGAGGAGGAAATGCCGGACGTGAAGATCAGTCCGAACGACGTCGTCGCGTTGCCTTACTCGTCTGGCACTACGGGTCTCCCGAAAGGAGTGATGCTGACTCACAAGGGATTGGTGACCAGCGTGGCGCAACAGGTGGACGGTGAAAATCCTCACCTCTATATTCGAAGCGACGACGTCGTTTTGTGCGTGCTTCCTCTGTTTCACATCTATTCGCTGAACTCGATTATGATGTGCTCGTTGCGAGTCGGAGCCGCGATTTTGATCGTACAGAAATTCGACGTTAATTCTCTCGTGGAGTTGGTGCCGAAATATAAGGTGACGGTTGCGCCGTTTGTGCCGCCTATTGTATTGGCGATTGCGAAGAGCCCGGCTGTGGACCGTGCCGACATGTCGTCCATACGGATGGTGTTGTCGGGAGCGGCACCGCTCGGGAAGGAGCTTGAAGATGCGTTTAGAGCCAAGCTTCCGCATGCGATTCTCGGCCAGGGATATGGAATGACGGAGTCGGGGTCGGTGTTGACGATGTCACTGGCATTTGCAAAGGAGAGGTTCGAGATAAAATCAGGAGCTTGTGGGACAGTGATGAGAAATTCAGAGATGAAGATCATAAACCCTCAAACGAGAGTTTCTCTTTCAAGGAATCAGCCTGGGGAGATTTGTATTAGAAGCCCTCAAATGATGAAAGGATACCTCAACGACGAAGAGGCCACGAAGGGCATAATCGACGAAGACGGATGGCTTCACACCGGCGACATAGGGTTCGTCGACGACGACGACGAGGTCTTCATCGTCGATCGTCTCAAGGAACTGATCAAATACAAAGGCTTCCAAGTGGCGCCGGCGGAGTTGGAAGCCCTGCTGATTTCACACAGCCAGATCGCCGACGCTGCAGTTATCCCTTTGAAAGATGAAGTTGCTGGAGAGGTTCCGGTTGCGTTCATTGTCCGATCCGACGGGTTCAACATCACCGAGGATGAAATTAAGCAATACATCTCCAAACAGGTTGTGTTTTATAAGAGGATTAATCGCGTCTTCTTCGTGGATTCCATCCCTAAAAGTCCTTCTGGCAAAATCTTGCGGAAACAACTTCGAAATTTGCTCGCAGCCAGTATTCCCAACTAG 1638 53.54 MAAPDPSPEFIFRSKLPDITIPNHLPLHTYCFEKISEFKHRPCLINGATGDTYTYGQVHATARRVAAGLHKLGIGKGDVIMLLLQNSPQFVLAFLGASYIGATATMANPFFTPPEIAKHAASSGAKLIITQAAFAEKVKNLSDENDAIVEVIYIDPPPDGGSHFSSLTDDAKEEEMPDVKISPNDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPHLYIRSDDVVLCVLPLFHIYSLNSIMMCSLRVGAAILIVQKFDVNSLVELVPKYKVTVAPFVPPIVLAIAKSPAVDRADMSSIRMVLSGAAPLGKELEDAFRAKLPHAILGQGYGMTESGSVLTMSLAFAKERFEIKSGACGTVMRNSEMKIINPQTRVSLSRNQPGEICIRSPQMMKGYLNDEEATKGIIDEDGWLHTGDIGFVDDDDEVFIVDRLKELIKYKGFQVAPAELEALLISHSQIADAAVIPLKDEVAGEVPVAFIVRSDGFNITEDEIKQYISKQVVFYKRINRVFFVDSIPKSPSGKILRKQLRNLLAASIPN 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2202850 2207273 - Lag0033838.1 Lac3g0310 600732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0310 545 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Lac3g0310 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 536 - GO:0016405(PANTHER)
Lac3g0310 545 SUPERFAMILY Acetyl-CoA synthetase-like 11 541 - -
Lac3g0310 545 Gene3D - 5 439 IPR042099 -
Lac3g0310 545 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 440 - -
Lac3g0310 545 CDD 4CL 21 535 - -
Lac3g0310 545 Gene3D - 440 542 IPR045851 -
Lac3g0310 545 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Lac3g0310 545 Pfam AMP-binding enzyme 34 403 IPR000873 -
Lac3g0310 545 FunFam 4-coumarate--CoA ligase 2 441 542 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0310 Lac-Chr3:2202850 Lac4g2710 Lac-Chr4:46053276 2.10E-201 dispersed
Lac11g2107 Lac-Chr11:36993121 Lac3g0310 Lac-Chr3:2202850 1.80E-50 transposed
Lac1g3590 Lac-Chr1:55133614 Lac3g0310 Lac-Chr3:2202850 2.90E-24 transposed
Lac6g2400 Lac-Chr6:41674924 Lac3g0310 Lac-Chr3:2202850 3.60E-148 transposed
Lac3g0310 Lac-Chr3:2202850 Lac6g2399 Lac-Chr6:41669985 1.30E-54 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0310 K01904 - csv:101218077 874.774