Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0326 ATGAACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCCTCTCAAAATTGGCTTGCTTTTTCTCTCTCCAACAATCCCAACTCTCTCTCTCTCTTTCATCATCCTACCGATCTCTCTATCTTCTCCGCCGCCGCCGCCCCCAAGCTCGAGGACTTTCTCCGGGGTGCTTCCGCTGCCCCTCCGCCGCCGCAGCCTCCCTTTCAGTTCTCCGCCCATCACACTCCGTCTAGCTTTTGTGATCAATCTGATCAGATTTGCGATTCTGATCTCAAAACCATAGCCGCTAGTTTCCTCCGTGGAGCTCCCACCCAGTTGCCGGACCAACAGATTCAGCATCTCCACGCGCCGCCGCCACCTCAGCCGGACACCCCTGCCCCGCCGCCTAAGAAGGCCGTCGATACTTTTGGCCAACGCACCTCCATCTACCGTGGCGTCACAAGACATAGATGGACTGGTCGATATGAAGCTCATTTGTGGGATAACAGTTGCAGAAGAGAGGGTCAGAGTAGAAAAGGAAGACAAGGTGGTTATGACAAAGAAGAAAAAGCAGCTAGAGCTTATGATCTTGCCGCTCTCAAATACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGGACTATGAAAAAGAACTGGAGGATATGAAAAACATGACCAGACAGGAATTTGTTGCTTCATTAAGAAGGAAAAGCAGTGGTTTTTCTAGAGGAGCTTCTATTTACAGAGGTGTAACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGAAGGGTTGCTGGCAATAAAGATCTCTACCTTGGAACATTCAGCACTCAGGAAGAAGCAGCCGAGGCCTATGACATCGCAGCCATCAAATTCAGAGGCCTCAACGCGGTCACCAACTTCGACATCACTCGCTACGACGTGAAGAGCATTGCCAGCAGCAACCTCCCCATCGGAGGGATGTCGGGCGCCAAATCCAAAACCACCTCCGACTCTACCACCTCCGACGGAGGCAGCCGATCGACCGAAGAACGCGACGTCCACCATTCTCCCGCGTCGTCCACCGCAACTCTCATTTCATCTCAACCCAACAACTCCACCCTAAGCTTTGCAATGCCAATCAAACAAGACCCATCCGATCAATACTGGTCCATGCTCGGCTACAACCCGGGCGCCTTCAACACAAACCTCCCCAAACCTGAAAACATCCCACCGTCATCGTCGTCGTCGATGACAGTATTCCAACAATCTTCAAACACCGGATCCACAATGTTCCCCGCCATCGCGGACCTACCTTCGAGTGGCTCGACGCTCACCGAAGGCGCTGTATACAGCGGCATGTACGTCCAGCAACAACAATATGCAACACCAATTGCATTGACCAGCGGATTAAGCATTGAGATTGGGCAATCAATGAGGGGATTCGAAGCTCATGCAAAACCAAGCCTTTTTCAGACGCCAATATTTGGAATAGAATGA 1479 51.45 MNSSSSSSSSSSSSSSASQNWLAFSLSNNPNSLSLFHHPTDLSIFSAAAAPKLEDFLRGASAAPPPPQPPFQFSAHHTPSSFCDQSDQICDSDLKTIAASFLRGAPTQLPDQQIQHLHAPPPPQPDTPAPPPKKAVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSDYEKELEDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDITRYDVKSIASSNLPIGGMSGAKSKTTSDSTTSDGGSRSTEERDVHHSPASSTATLISSQPNNSTLSFAMPIKQDPSDQYWSMLGYNPGAFNTNLPKPENIPPSSSSSMTVFQQSSNTGSTMFPAIADLPSSGSTLTEGAVYSGMYVQQQQYATPIALTSGLSIEIGQSMRGFEAHAKPSLFQTPIFGIE 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2331928 2334794 + Lag0033854.1 Lac3g0326 600748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0326 492 ProSiteProfiles AP2/ERF domain profile. 244 302 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0326 492 FunFam AP2-like ethylene-responsive transcription factor 243 304 - -
Lac3g0326 492 FunFam AP2-like ethylene-responsive transcription factor ANT 144 210 - -
Lac3g0326 492 SUPERFAMILY DNA-binding domain 243 303 IPR016177 GO:0003677(InterPro)
Lac3g0326 492 CDD AP2 243 304 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0326 492 PRINTS Ethylene responsive element binding protein signature 146 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0326 492 PRINTS Ethylene responsive element binding protein signature 284 304 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0326 492 MobiDBLite consensus disorder prediction 116 132 - -
Lac3g0326 492 Pfam AP2 domain 245 294 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0326 492 Pfam AP2 domain 146 200 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0326 492 SUPERFAMILY DNA-binding domain 144 210 IPR016177 GO:0003677(InterPro)
Lac3g0326 492 Gene3D AP2/ERF domain 244 304 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0326 492 Gene3D AP2/ERF domain 145 210 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0326 492 MobiDBLite consensus disorder prediction 317 361 - -
Lac3g0326 492 ProSiteProfiles AP2/ERF domain profile. 145 208 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0326 492 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 7 362 - -
Lac3g0326 492 MobiDBLite consensus disorder prediction 114 138 - -
Lac3g0326 492 MobiDBLite consensus disorder prediction 317 337 - -
Lac3g0326 492 CDD AP2 144 210 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0326 492 SMART rav1_2 145 214 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0326 492 SMART rav1_2 244 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0326 492 MobiDBLite consensus disorder prediction 58 78 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0326 Lac-Chr3:2331928 Lac9g2842 Lac-Chr9:46412527 2.50E-97 dispersed
Lac3g0326 Lac-Chr3:2331928 Lac6g1794 Lac-Chr6:28856523 1.40E-100 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23564 PF00847 AP2 9.20E-10 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0326 K09285 - csv:101210453 624.009