Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac3g0332 | ATGGCCGGAAAACTCAGTCTCGAGGAGATCAAGAACGAAACTGTTGATCTGGAGAAAATACCCGTTGCGGAAGTGTTTGAGCAATTGAAATGTGGCCCCGAAGGTCTGTCAACTCAGGAGGGAGAGAACAGACTCCAGTTATTCGGTCCCAACAAATTAGAAGAGAAAAAGGAAAGCAAAATACTCAAGTTCTTGGGGTTCATGTGGAATCCCTTGTCATGGGTTATGGAAGCTGCAGCTATTATGGCAATTGCTTTGGCAAATGGTGGTGGAAAGCCTCCAGATTGGGAAGACTTTGTGGGAATTATATGTTTATTGGTGATCAACTCCACAATCAGTTTCATTGAGGAAAATAATGCTGGTAATGCTGCTGCTGCTCTCATGGCTGGCCTTGCCCCAAAAACTAAGGTGCTCAGAGATGGCAAATGGAGTGAGCAGGATGCTGCAATTTTGGTTCCTGGGGATATCATTAGTGTAAAGTTGGGAGATATTATCCCTGCCGATGCTCGTCTTCTCGAGGGCGATCCTTTGAAAGTTGATCAATCTGCATTGACTGGAGAATCACTTCCTGTAACCAAAAATCCTGGGGATGAAATCTTTTCTGGTTCTACTTGCAAACAAGGGGAAATTGAAGCTGTTGTCATAGCCACTGGTGTCCATACCTTCTTTGGAAAAGCAGCTCATCTTGTAGACAGCACCCATCAAGTAGGCCACTTCCAAAAGGTGCTGACATCAATTGGGAATTTCTGTATTTGTTCCATTGCACTAGGAATGCTGGTTGAGATCATTGTCATGTACCCAATTCAACACCGCAAATACCGCGATGGAATCGACAATCTTCTCGTTCTCTTGATCGGTGGAATACCGATCGCCATGCCGACTGTCCTGTCAGTGACAATGGCTATTGGATCTCACAAGCTATCCCAACAAGGTGCCATCACCAAGCGTATGACTGCCATTGAGGAGATGGCTGGTATGGATGTCCTCTGCAGTGATAAAACAGGAACGTTAACGTCAACAAGCTTAGTGTTGATGGCTTCTCGAACTGAAAATCAAGATGCAATTGATGCTGCTATCGTAGGGATGCTAGCTGACCCTAAGGAGGCACGAGCAGGCATAAGAGAAGTGCACTTCTTCCCATTCAATCCTGTGGATAAGAGAACTGCATTAACTTACATTGATTCTGATGGTAATTGGCATCGAGCAAGCAAAGGTGCTCCAGAGCAGATCTTAACGCTTTGCAACTGCAAAGAGGATGTCAAGAAGAAGGCTCATGCTGTTATTGACAAATTTGCCGAACGCGGTCTTCGCTCATTGGCGGTCGCGAGACAGGAAGTACCTGAGAAAAGAAAAGAAAGTCCTGGAAGTCCATGGCAGTTCGTTGGTTTGTTGCCTCTATTTGATCCTCCAAGGCACGACAGTGGAGAAACCATCAAAAGAGCTCTCAATCTAGGAGTGAATGTCAAGATGATTACTGGTGATCAGCTTGCTATCGCCAAAGAGACCGGTCGAAGACTTGGAATGGGGACTAACATGTACCCATCTGCATCATTACTTGGTCAACACAAGGATGAAAGCATTGCAGGCCTTCCTGTTGAAGAGTTAATTGAAAAGGCAGATGGGTTTGCTGGAGTTTTTCCAGAGCACAAGTATGAGATCGTGAGGAAGTTGCAGGAGAGGAAACATATTTGTGGAATGACTGGAGATGGTGTGAACGATGCTCCTGCATTGAAGAAGGCCGACATTGGAATAGCAGTTGCCGACGCTACTGATGCTGCAAGAAGTGCTTCTGATATTGTTCTCACAGAGCCAGGCTTAAGTGTTATCATTAGTGCTGTGCTTACAAGTAGAGCTATCTTCCAAAGAATGAAGAATTACACAATTTATGCAGTTTCAATCACAATACGTATAGTGTTCGGTTTCATGCTGATTGCCCTCATATGGAAGTTCGATTTCTCTCCATTCATGGTTTTGATCATTGCCATTCTAAACGATGGTACAATCATGACCATCTCAAAGGATAGAGTGAAGCCATCTCCATTACCCGACAGCTGGAAATTGAAAGAGATATTTGCTACAGGCATTATGCTTGGAGGTTACTTGGCATTGATGACTGTCATATTCTTCTGGATAATGAAAGAGACAGAATTCTTCCCAGAGAAATTTGGTGTAAGATCTATTAAGGACAGTCCTAAAGAAATGATGGCTGCTCTATACCTACAAGTGAGTATTGTCAGCCAGGCTTTGATATTTGTGACTCGATCTCGCAGCTGGTCCTACGTCGAACGTCCTGGCTTGCTACTGATGGGTGCTTTCATGATTGCACAACTGGTTGCAACACTCATAGCAGTATATGCAAACTGGGGATTTGCAAGGATAAAAGGAGTTGGATGGGGATGGGCTGGTGTGGTCTGGATCTACAGCATTATTTTCTACATTCCATTAGACTTTATCAAGTTTGCAATCCGCTATATCTTAAGTGGCAAGGCTTGGCTTAACTTGCTAGACAACAAGACCGCCTTTACGACGAAGAAGGACTACGGAAGGGAGGAAAGGGAAGCTCAATGGGCTGCTACTCAAAGGACCTTACATGGCCTCCAACCAGCCCCAGAAAGAACCAGTCTCTTCCTTGAAAAGAATAGCTACAGAGAGCTTTCTGAAATCGCAGAGCAGGCCAAGAGACGAGCAGAGATTGCTAGGCTTAGAGAGCTCAATACTCTCAAGGGTCATGTTGAATCAGTAGTGAAACTGAAAGGGCTGGATATTGATACAATCCAACAGCATTATACAGTGTAA | 2796 | 44.56 | MAGKLSLEEIKNETVDLEKIPVAEVFEQLKCGPEGLSTQEGENRLQLFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWEDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQDAAILVPGDIISVKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKNPGDEIFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTHQVGHFQKVLTSIGNFCICSIALGMLVEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTSTSLVLMASRTENQDAIDAAIVGMLADPKEARAGIREVHFFPFNPVDKRTALTYIDSDGNWHRASKGAPEQILTLCNCKEDVKKKAHAVIDKFAERGLRSLAVARQEVPEKRKESPGSPWQFVGLLPLFDPPRHDSGETIKRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQHKDESIAGLPVEELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIMLGGYLALMTVIFFWIMKETEFFPEKFGVRSIKDSPKEMMAALYLQVSIVSQALIFVTRSRSWSYVERPGLLLMGAFMIAQLVATLIAVYANWGFARIKGVGWGWAGVVWIYSIIFYIPLDFIKFAIRYILSGKAWLNLLDNKTAFTTKKDYGREEREAQWAATQRTLHGLQPAPERTSLFLEKNSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV | 931 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 2398385 | 2404054 | + | Lag0033860.1 | Lac3g0332 | 600754 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac3g0332 | 931 | Gene3D | - | 327 | 604 | IPR023214 | - | |
| Lac3g0332 | 931 | PRINTS | H+-transporting ATPase (proton pump) signature | 539 | 555 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac3g0332 | 931 | PRINTS | H+-transporting ATPase (proton pump) signature | 739 | 760 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac3g0332 | 931 | PRINTS | H+-transporting ATPase (proton pump) signature | 424 | 442 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac3g0332 | 931 | PRINTS | H+-transporting ATPase (proton pump) signature | 567 | 583 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac3g0332 | 931 | PRINTS | H+-transporting ATPase (proton pump) signature | 598 | 623 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac3g0332 | 931 | Pfam | Cation transporter/ATPase, N-terminus | 19 | 82 | IPR004014 | - | |
| Lac3g0332 | 931 | Gene3D | - | 133 | 217 | - | - | |
| Lac3g0332 | 931 | CDD | P-type_ATPase_H | 35 | 820 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Lac3g0332 | 931 | FunFam | Plasma membrane ATPase | 460 | 615 | - | - | |
| Lac3g0332 | 931 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 18 | 854 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Lac3g0332 | 931 | Pfam | haloacid dehalogenase-like hydrolase | 326 | 581 | - | - | |
| Lac3g0332 | 931 | SUPERFAMILY | HAD-like | 326 | 614 | IPR036412 | - | |
| Lac3g0332 | 931 | Gene3D | - | 342 | 467 | IPR023299 | GO:0000166(InterPro) | |
| Lac3g0332 | 931 | Gene3D | - | 95 | 794 | - | - | |
| Lac3g0332 | 931 | NCBIfam | HAD-IC family P-type ATPase | 542 | 655 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac3g0332 | 931 | NCBIfam | HAD-IC family P-type ATPase | 102 | 515 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac3g0332 | 931 | Pfam | E1-E2 ATPase | 132 | 309 | - | - | |
| Lac3g0332 | 931 | SUPERFAMILY | Calcium ATPase, transduction domain A | 133 | 230 | IPR008250 | - | |
| Lac3g0332 | 931 | SFLD | C1.7: P-type atpase like | 312 | 618 | - | - | |
| Lac3g0332 | 931 | Gene3D | - | 880 | 931 | - | - | |
| Lac3g0332 | 931 | Coils | Coil | 882 | 902 | - | - | |
| Lac3g0332 | 931 | FunFam | Plasma membrane ATPase | 133 | 217 | - | - | |
| Lac3g0332 | 931 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 16 | 826 | IPR023298 | - | |
| Lac3g0332 | 931 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 332 | 338 | IPR018303 | - | |
| Lac3g0332 | 931 | SFLD | p-type atpase | 312 | 618 | IPR044492 | - | |
| Lac3g0332 | 931 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 35 | 785 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Lac3g0332 | 931 | SMART | Cation_ATPase_N_a_2 | 16 | 88 | IPR004014 | - | |
| Lac3g0332 | 931 | FunFam | Plasma membrane ATPase | 331 | 467 | - | - | |
| Lac3g0332 | 931 | FunFam | ATPase 4 plasma membrane-type | 552 | 794 | - | - | |
| Lac3g0332 | 931 | PRINTS | P-type cation-transporting ATPase superfamily signature | 330 | 344 | - | - | |
| Lac3g0332 | 931 | PRINTS | P-type cation-transporting ATPase superfamily signature | 462 | 473 | - | - | |
| Lac3g0332 | 931 | PRINTS | P-type cation-transporting ATPase superfamily signature | 180 | 194 | - | - | |
| Lac3g0332 | 931 | PRINTS | P-type cation-transporting ATPase superfamily signature | 590 | 602 | - | - | |
| Lac3g0332 | 931 | PRINTS | P-type cation-transporting ATPase superfamily signature | 484 | 494 | - | - | |
| Lac3g0332 | 931 | PRINTS | P-type cation-transporting ATPase superfamily signature | 567 | 586 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac3g0332 | Lac-Chr3:2398385 | Lac6g1186 | Lac-Chr6:11288308 | 0.00E+00 | dispersed | |
| Lac3g0332 | Lac-Chr3:2398385 | Lac3g0340 | Lac-Chr3:2489555 | 6.80E-19 | proximal | |
| Lac3g0332 | Lac-Chr3:2398385 | Lac6g2308 | Lac-Chr6:40409927 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac3g0332 | K01535 | - | csv:101221783 | 1719.13 |