Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0332 ATGGCCGGAAAACTCAGTCTCGAGGAGATCAAGAACGAAACTGTTGATCTGGAGAAAATACCCGTTGCGGAAGTGTTTGAGCAATTGAAATGTGGCCCCGAAGGTCTGTCAACTCAGGAGGGAGAGAACAGACTCCAGTTATTCGGTCCCAACAAATTAGAAGAGAAAAAGGAAAGCAAAATACTCAAGTTCTTGGGGTTCATGTGGAATCCCTTGTCATGGGTTATGGAAGCTGCAGCTATTATGGCAATTGCTTTGGCAAATGGTGGTGGAAAGCCTCCAGATTGGGAAGACTTTGTGGGAATTATATGTTTATTGGTGATCAACTCCACAATCAGTTTCATTGAGGAAAATAATGCTGGTAATGCTGCTGCTGCTCTCATGGCTGGCCTTGCCCCAAAAACTAAGGTGCTCAGAGATGGCAAATGGAGTGAGCAGGATGCTGCAATTTTGGTTCCTGGGGATATCATTAGTGTAAAGTTGGGAGATATTATCCCTGCCGATGCTCGTCTTCTCGAGGGCGATCCTTTGAAAGTTGATCAATCTGCATTGACTGGAGAATCACTTCCTGTAACCAAAAATCCTGGGGATGAAATCTTTTCTGGTTCTACTTGCAAACAAGGGGAAATTGAAGCTGTTGTCATAGCCACTGGTGTCCATACCTTCTTTGGAAAAGCAGCTCATCTTGTAGACAGCACCCATCAAGTAGGCCACTTCCAAAAGGTGCTGACATCAATTGGGAATTTCTGTATTTGTTCCATTGCACTAGGAATGCTGGTTGAGATCATTGTCATGTACCCAATTCAACACCGCAAATACCGCGATGGAATCGACAATCTTCTCGTTCTCTTGATCGGTGGAATACCGATCGCCATGCCGACTGTCCTGTCAGTGACAATGGCTATTGGATCTCACAAGCTATCCCAACAAGGTGCCATCACCAAGCGTATGACTGCCATTGAGGAGATGGCTGGTATGGATGTCCTCTGCAGTGATAAAACAGGAACGTTAACGTCAACAAGCTTAGTGTTGATGGCTTCTCGAACTGAAAATCAAGATGCAATTGATGCTGCTATCGTAGGGATGCTAGCTGACCCTAAGGAGGCACGAGCAGGCATAAGAGAAGTGCACTTCTTCCCATTCAATCCTGTGGATAAGAGAACTGCATTAACTTACATTGATTCTGATGGTAATTGGCATCGAGCAAGCAAAGGTGCTCCAGAGCAGATCTTAACGCTTTGCAACTGCAAAGAGGATGTCAAGAAGAAGGCTCATGCTGTTATTGACAAATTTGCCGAACGCGGTCTTCGCTCATTGGCGGTCGCGAGACAGGAAGTACCTGAGAAAAGAAAAGAAAGTCCTGGAAGTCCATGGCAGTTCGTTGGTTTGTTGCCTCTATTTGATCCTCCAAGGCACGACAGTGGAGAAACCATCAAAAGAGCTCTCAATCTAGGAGTGAATGTCAAGATGATTACTGGTGATCAGCTTGCTATCGCCAAAGAGACCGGTCGAAGACTTGGAATGGGGACTAACATGTACCCATCTGCATCATTACTTGGTCAACACAAGGATGAAAGCATTGCAGGCCTTCCTGTTGAAGAGTTAATTGAAAAGGCAGATGGGTTTGCTGGAGTTTTTCCAGAGCACAAGTATGAGATCGTGAGGAAGTTGCAGGAGAGGAAACATATTTGTGGAATGACTGGAGATGGTGTGAACGATGCTCCTGCATTGAAGAAGGCCGACATTGGAATAGCAGTTGCCGACGCTACTGATGCTGCAAGAAGTGCTTCTGATATTGTTCTCACAGAGCCAGGCTTAAGTGTTATCATTAGTGCTGTGCTTACAAGTAGAGCTATCTTCCAAAGAATGAAGAATTACACAATTTATGCAGTTTCAATCACAATACGTATAGTGTTCGGTTTCATGCTGATTGCCCTCATATGGAAGTTCGATTTCTCTCCATTCATGGTTTTGATCATTGCCATTCTAAACGATGGTACAATCATGACCATCTCAAAGGATAGAGTGAAGCCATCTCCATTACCCGACAGCTGGAAATTGAAAGAGATATTTGCTACAGGCATTATGCTTGGAGGTTACTTGGCATTGATGACTGTCATATTCTTCTGGATAATGAAAGAGACAGAATTCTTCCCAGAGAAATTTGGTGTAAGATCTATTAAGGACAGTCCTAAAGAAATGATGGCTGCTCTATACCTACAAGTGAGTATTGTCAGCCAGGCTTTGATATTTGTGACTCGATCTCGCAGCTGGTCCTACGTCGAACGTCCTGGCTTGCTACTGATGGGTGCTTTCATGATTGCACAACTGGTTGCAACACTCATAGCAGTATATGCAAACTGGGGATTTGCAAGGATAAAAGGAGTTGGATGGGGATGGGCTGGTGTGGTCTGGATCTACAGCATTATTTTCTACATTCCATTAGACTTTATCAAGTTTGCAATCCGCTATATCTTAAGTGGCAAGGCTTGGCTTAACTTGCTAGACAACAAGACCGCCTTTACGACGAAGAAGGACTACGGAAGGGAGGAAAGGGAAGCTCAATGGGCTGCTACTCAAAGGACCTTACATGGCCTCCAACCAGCCCCAGAAAGAACCAGTCTCTTCCTTGAAAAGAATAGCTACAGAGAGCTTTCTGAAATCGCAGAGCAGGCCAAGAGACGAGCAGAGATTGCTAGGCTTAGAGAGCTCAATACTCTCAAGGGTCATGTTGAATCAGTAGTGAAACTGAAAGGGCTGGATATTGATACAATCCAACAGCATTATACAGTGTAA 2796 44.56 MAGKLSLEEIKNETVDLEKIPVAEVFEQLKCGPEGLSTQEGENRLQLFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWEDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQDAAILVPGDIISVKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKNPGDEIFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTHQVGHFQKVLTSIGNFCICSIALGMLVEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTSTSLVLMASRTENQDAIDAAIVGMLADPKEARAGIREVHFFPFNPVDKRTALTYIDSDGNWHRASKGAPEQILTLCNCKEDVKKKAHAVIDKFAERGLRSLAVARQEVPEKRKESPGSPWQFVGLLPLFDPPRHDSGETIKRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQHKDESIAGLPVEELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIMLGGYLALMTVIFFWIMKETEFFPEKFGVRSIKDSPKEMMAALYLQVSIVSQALIFVTRSRSWSYVERPGLLLMGAFMIAQLVATLIAVYANWGFARIKGVGWGWAGVVWIYSIIFYIPLDFIKFAIRYILSGKAWLNLLDNKTAFTTKKDYGREEREAQWAATQRTLHGLQPAPERTSLFLEKNSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV 931
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 2398385 2404054 + Lag0033860.1 Lac3g0332 600754
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0332 931 Gene3D - 327 604 IPR023214 -
Lac3g0332 931 PRINTS H+-transporting ATPase (proton pump) signature 539 555 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac3g0332 931 PRINTS H+-transporting ATPase (proton pump) signature 739 760 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac3g0332 931 PRINTS H+-transporting ATPase (proton pump) signature 424 442 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac3g0332 931 PRINTS H+-transporting ATPase (proton pump) signature 567 583 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac3g0332 931 PRINTS H+-transporting ATPase (proton pump) signature 598 623 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac3g0332 931 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Lac3g0332 931 Gene3D - 133 217 - -
Lac3g0332 931 CDD P-type_ATPase_H 35 820 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Lac3g0332 931 FunFam Plasma membrane ATPase 460 615 - -
Lac3g0332 931 PANTHER CALCIUM-TRANSPORTING ATPASE 18 854 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Lac3g0332 931 Pfam haloacid dehalogenase-like hydrolase 326 581 - -
Lac3g0332 931 SUPERFAMILY HAD-like 326 614 IPR036412 -
Lac3g0332 931 Gene3D - 342 467 IPR023299 GO:0000166(InterPro)
Lac3g0332 931 Gene3D - 95 794 - -
Lac3g0332 931 NCBIfam HAD-IC family P-type ATPase 542 655 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac3g0332 931 NCBIfam HAD-IC family P-type ATPase 102 515 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac3g0332 931 Pfam E1-E2 ATPase 132 309 - -
Lac3g0332 931 SUPERFAMILY Calcium ATPase, transduction domain A 133 230 IPR008250 -
Lac3g0332 931 SFLD C1.7: P-type atpase like 312 618 - -
Lac3g0332 931 Gene3D - 880 931 - -
Lac3g0332 931 Coils Coil 882 902 - -
Lac3g0332 931 FunFam Plasma membrane ATPase 133 217 - -
Lac3g0332 931 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 826 IPR023298 -
Lac3g0332 931 ProSitePatterns E1-E2 ATPases phosphorylation site. 332 338 IPR018303 -
Lac3g0332 931 SFLD p-type atpase 312 618 IPR044492 -
Lac3g0332 931 NCBIfam plasma-membrane proton-efflux P-type ATPase 35 785 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Lac3g0332 931 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Lac3g0332 931 FunFam Plasma membrane ATPase 331 467 - -
Lac3g0332 931 FunFam ATPase 4 plasma membrane-type 552 794 - -
Lac3g0332 931 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Lac3g0332 931 PRINTS P-type cation-transporting ATPase superfamily signature 462 473 - -
Lac3g0332 931 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Lac3g0332 931 PRINTS P-type cation-transporting ATPase superfamily signature 590 602 - -
Lac3g0332 931 PRINTS P-type cation-transporting ATPase superfamily signature 484 494 - -
Lac3g0332 931 PRINTS P-type cation-transporting ATPase superfamily signature 567 586 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0332 Lac-Chr3:2398385 Lac6g1186 Lac-Chr6:11288308 0.00E+00 dispersed
Lac3g0332 Lac-Chr3:2398385 Lac3g0340 Lac-Chr3:2489555 6.80E-19 proximal
Lac3g0332 Lac-Chr3:2398385 Lac6g2308 Lac-Chr6:40409927 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0332 K01535 - csv:101221783 1719.13