Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0340 ATGGCGGCCGGAGAAGAGAAGGCGGAGGCGGCGGTGGCCGGAAAGAGTGGCGGCGGTGGGTTGCAGAGAAGTTACTTTGATGTGTTGGGGATTTGTTGTGCTTCGGAAATTCCTTTGATTGAGAATATATTGAAGGAGATGGAAGGGGTTAAAGAGATTAGAGTGATTGTTGCCACAAGAACTGTCATTGTTGTTCATGATAATCTCCTTCTTTCTCAAGCTCAAATTGTTAAAGCCCTAAACCAAGCAAGGTTGGAAGCGAACGTCAGAGCGTACGGAGATCAGAAAAATCACCGGAAAAGATGGCCGAGCCCGTATGCGGTGGCGAGTGGACTGCTGCTACTTCTGTCGTTTCTCAAGTATGTGAACCCTATTTTCCGATGGGTGGCTTTGGCCGCCGTCGCTGCCGGAATCTGGCCGATAGTCCTCAAAAGCTTCGCCGCCGTTCGTAATCTCAGAATCGACATCAATATTCTTGCTTTAATTGCAGTGATCGGGACAATCGTGATGAAGGATTATTTGGAAGCGGCCACCATCGTCTTCCTCTTCACAATCGCCGAATGGCTCGAGTCCAGAGCCAGCCACAAGGCCAACGCCGTCATGTCGTCCCTTCTAAGCATCGCCCCTCAGAAAGCGGTTCTAGCCGACACCGGCGAAGTTGTCGGCGCCGACGAGGTCAAATTGGGGACTCTGCTGGCCGTCAAGGCCGGTGAAGACATTCCGATTGATGGAATCGTTGTCGAAGGAAAATGTGAAGTGGATGAGAAGACGCTTACTGGTGAATCTTTCCCTGTTCCCAAACAAAAGAATTCCACTGTTTGGGCTGGTACCATCAATCTAAATGGCTATGTTACTGTGAAGACCACTGCTCTTGCTGAGGACTGTGTGGTGGCTAAAATGGCTAAGCTGGTTGAAGAGGCCCAGAACAATAAATCTAGAACTCAAAGGTTCATTGACATATGTGCCAAATTCTACACTCCAGCTGTTATAATCATATCAACTTGCATAGCGGTGATTCCAGTTGCTTTGAGACTACCCAATCGCAGCCATTGGTTTCACTTGGCCCTGGTTGTGTTAGTAAGCGCGTGTCCCTGTGCCCTCATCCTTTCCACACCTGTTGCCTCTTTTTGTGCACTTACAAAGGCAGCAACTTCTGGCCTTCTAATCAAAGGAGGCGACTTCCTTGAAACTCTGGCCAAAATTAAGATCATGGCCTTTGATAAAACTGGAACAATAACAAGGGGTGAATTTATGGTGACTGAATTTCAAGCTCTTGATAAGGACAATATAAGCTTTGACACATTGCTCTACTGGGTATCAAGCATTGAGAGCAAGTCCAGTCATCCCATGGCAGCTGCACTTGTTGACCATGGAAGATCACTATCCATCTTTCCCAAACCCGAAAATGTGGATGACTTCCAAAATTTCCCTGGAGAAGGCGTTCATGGGAGAATTGATGGGAAAGACATCTATATTGGAAATCGAAAAATTGCTACAAGAGCCAATTGCACAACAGTCCCAGATATGAATGATGAAGCGAGGGATGGAAGGACTGTTGGATACATATTCTGTGAAACTAGTGCAGTTGGAACCTTTAGTCTATCAGATTCTTGCAGGACAGGAGCTAAGGAGGCCATGGATGAGCTCCGATCTCTCGGTATAAAAACAGCCATGCTTACCGGAGACAGTTCTGCAGCAGCCTTGCAAGCACAAAAAGAATTGGGAAAGGCTTTAGAAATAGTCCATGCAGAACTTCTACCTGAAGACAAGACAAGACTCATCAATGACTTCAAAAGGGAGGGGCCAACGGCCATGATTGGAGACGGTTTAAATGATGCCCCTGCCTTGGCCACAGCTGATATTGGCATATCAATGGGGATCTCAGGTTCGGCTCTCGCAATAGAAACTGGAGATGTAATTCTAATGACTAATGACATCAGGAAAATTCCAAAAGCCATTAAACTTGCAAGAAGAGCTAATCGTAAAGTAATCGAAAATGTGATTCTATCAGTCGTTCCTAGAACTGCTATACTTGGTCTAGCATTTGGAGGTCATCCACTTGTTTGGGCAGCAGTTCTTGTTGATGTTGGTGCCTGTGTGCTAGTTATCCTCAACAGTATGCTCCTGCTGCGAGGAACCGACGGACACAAAGGGAAAAAAGCTGGTAAGTTTTCTGCTACTCACTGTTCCTCCAAACATAAATGTTGTCATGTTGGTAGCCATTCAGATGAACATGGTAGTCACACTCATGATCATGGGTGCAACAATGGTAGTTCCCACTCTTCTAATCATCATCATCACCATGATCACGGGTGCAACAATGACAGTTCCCTCGCTTCTGGTCACCATCACCATCATCATGAGCACAAGGACTGTGGCTCTCTCAAGAAAACTCATGATGGCTGCTTACCTCAGAATTGTTCGTCCAAGTGTGATTCCGGGATGAAAAATTCGAGTTCATGCAAGAAAAGTAAACTTGTGGACTCAAGTTCTAAGGTAGATGATTCTGCGGGCAATGTAAAACCTTGTGAACATGGACATTGCGTCCACAACAACCAGCCTGATGAACATGACCATGATGCCCATTTATCGTGCGCTAACCATCATGTTGAGGACAAACATTGCTCTCCAAAGAATACACAAGAGTCTTGCTCTTCTCAGAAGTGTGCATCAAATTCATGTGAGAAAATCAAGTGCACAAGCTCACTCGCAAGCCTTGATGGATCTGTAGACAGTGTTGAGCTCCATGAAAGTGAATGTTGTATTCATAATAGCCAATCTGCTCAACACGATCATGAACATGACCATCATGCCCATTTTTCATGCGCTGATCATCATGTTGAGGAAAAACATTGTGCTCCAAAGAATACACAAGAGTGTTGCTCATCTCAGAAGTTTGCATCAAGTTCATGTGAGCAAATCAGTGTTGAGCTCCATGGAAGCGGATGTTGTACTCATAATAGCCAATCTGCTCAACATGATCATGACATCCATACTCTTAAATGTGATTTGGACGACAGCCACTTATCCAGCCCTGATCATCATATTGGTCATGGTTGTTGCTCTGAAAAGAACGCTCAGAAGGTTTCTTTATCTCCTCAAACGTGTCATTCTGAAACCTGCAATTTGAGTCCATGTGGGGAAACCAAATGTGTGGACTCAACTGCAAGGCAACATGCGCCTGAAGGCAGTCTAGAACTCCTCCAAGACCATAAGCATTGCCACCAAGGAAGCTTCGACACTTCCAATTTTGTCTTGAAATCCCAGGAAAAGCACAGGAAGAATTGTACTGGACCTTGCAAATCAAGATCAATAAGCGTGTGCACAGAAGATGAATGCAGGAAAAGGCTTGAAATGATAGATGATTGTGCTGAAGCCAAGGGGCACCACAAGATGAAACAACATCACTGCGACACTCATTTGAGTCTTCGAAACGAAGGGACTCATCCTCATTGTAAGACATCAAATGGAGATGAAGGTGGAGCAATCAACACTGCCATAAGCATCAAGCTCGATTCAGACCATTCAAACCCGAAACCTGCCAGTGCCTGTAAGGCTCTGGAAAACAGAGAATCAAACAACAGCTGCAAAAGCTGCAAAAGGGGAAGCTCACAACTCAAAATTGGCAAATCTTGTGCAGCTTTGGAAAAGAGAGAATATGGTGGATGCTGTAAGAGCTACATGAAGGAGTGCTGCAGGAAACACGGTGATATCAGAACGGCAGTCCGAGGAGGCTTAAACGAAATAGTTATAGAATAG 3759 45.36 MAAGEEKAEAAVAGKSGGGGLQRSYFDVLGICCASEIPLIENILKEMEGVKEIRVIVATRTVIVVHDNLLLSQAQIVKALNQARLEANVRAYGDQKNHRKRWPSPYAVASGLLLLLSFLKYVNPIFRWVALAAVAAGIWPIVLKSFAAVRNLRIDINILALIAVIGTIVMKDYLEAATIVFLFTIAEWLESRASHKANAVMSSLLSIAPQKAVLADTGEVVGADEVKLGTLLAVKAGEDIPIDGIVVEGKCEVDEKTLTGESFPVPKQKNSTVWAGTINLNGYVTVKTTALAEDCVVAKMAKLVEEAQNNKSRTQRFIDICAKFYTPAVIIISTCIAVIPVALRLPNRSHWFHLALVVLVSACPCALILSTPVASFCALTKAATSGLLIKGGDFLETLAKIKIMAFDKTGTITRGEFMVTEFQALDKDNISFDTLLYWVSSIESKSSHPMAAALVDHGRSLSIFPKPENVDDFQNFPGEGVHGRIDGKDIYIGNRKIATRANCTTVPDMNDEARDGRTVGYIFCETSAVGTFSLSDSCRTGAKEAMDELRSLGIKTAMLTGDSSAAALQAQKELGKALEIVHAELLPEDKTRLINDFKREGPTAMIGDGLNDAPALATADIGISMGISGSALAIETGDVILMTNDIRKIPKAIKLARRANRKVIENVILSVVPRTAILGLAFGGHPLVWAAVLVDVGACVLVILNSMLLLRGTDGHKGKKAGKFSATHCSSKHKCCHVGSHSDEHGSHTHDHGCNNGSSHSSNHHHHHDHGCNNDSSLASGHHHHHHEHKDCGSLKKTHDGCLPQNCSSKCDSGMKNSSSCKKSKLVDSSSKVDDSAGNVKPCEHGHCVHNNQPDEHDHDAHLSCANHHVEDKHCSPKNTQESCSSQKCASNSCEKIKCTSSLASLDGSVDSVELHESECCIHNSQSAQHDHEHDHHAHFSCADHHVEEKHCAPKNTQECCSSQKFASSSCEQISVELHGSGCCTHNSQSAQHDHDIHTLKCDLDDSHLSSPDHHIGHGCCSEKNAQKVSLSPQTCHSETCNLSPCGETKCVDSTARQHAPEGSLELLQDHKHCHQGSFDTSNFVLKSQEKHRKNCTGPCKSRSISVCTEDECRKRLEMIDDCAEAKGHHKMKQHHCDTHLSLRNEGTHPHCKTSNGDEGGAINTAISIKLDSDHSNPKPASACKALENRESNNSCKSCKRGSSQLKIGKSCAALEKREYGGCCKSYMKECCRKHGDIRTAVRGGLNEIVIE 1252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2489555 2497442 + Lag0033868.1 Lac3g0340 600762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0340 1252 PRINTS H+-transporting ATPase (proton pump) signature 638 663 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac3g0340 1252 PRINTS H+-transporting ATPase (proton pump) signature 606 622 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac3g0340 1252 Gene3D - 194 308 - -
Lac3g0340 1252 SUPERFAMILY Calcium ATPase, transduction domain A 219 304 IPR008250 -
Lac3g0340 1252 SUPERFAMILY HAD-like 405 707 IPR036412 -
Lac3g0340 1252 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 21 921 IPR051014 GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Lac3g0340 1252 CDD P-type_ATPase_HM 106 708 - -
Lac3g0340 1252 Gene3D - 416 538 IPR023299 GO:0000166(InterPro)
Lac3g0340 1252 ProSitePatterns Hypothetical cof family signature 2. 606 628 - -
Lac3g0340 1252 Pfam haloacid dehalogenase-like hydrolase 401 620 - -
Lac3g0340 1252 Gene3D - 396 657 IPR023214 -
Lac3g0340 1252 MobiDBLite consensus disorder prediction 740 790 - -
Lac3g0340 1252 FunFam Putative cadmium/zinc-transporting ATPase 3 416 538 - -
Lac3g0340 1252 NCBIfam HAD-IC family P-type ATPase 179 679 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac3g0340 1252 Pfam E1-E2 ATPase 215 384 - -
Lac3g0340 1252 NCBIfam cadmium family heavy metal-translocating P-type ATPase 156 711 - -
Lac3g0340 1252 NCBIfam heavy metal translocating P-type ATPase 156 709 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Lac3g0340 1252 MobiDBLite consensus disorder prediction 810 836 - -
Lac3g0340 1252 SFLD p-type atpase 388 658 IPR044492 -
Lac3g0340 1252 SUPERFAMILY HMA, heavy metal-associated domain 19 92 IPR036163 GO:0046872(InterPro)
Lac3g0340 1252 Gene3D - 20 91 - -
Lac3g0340 1252 PRINTS P-type cation-transporting ATPase superfamily signature 405 419 - -
Lac3g0340 1252 PRINTS P-type cation-transporting ATPase superfamily signature 552 562 - -
Lac3g0340 1252 PRINTS P-type cation-transporting ATPase superfamily signature 630 642 - -
Lac3g0340 1252 PRINTS P-type cation-transporting ATPase superfamily signature 254 268 - -
Lac3g0340 1252 PRINTS P-type cation-transporting ATPase superfamily signature 606 625 - -
Lac3g0340 1252 SFLD Haloacid Dehalogenase 388 658 - -
Lac3g0340 1252 SUPERFAMILY Calcium ATPase, transmembrane domain M 156 399 IPR023298 -
Lac3g0340 1252 MobiDBLite consensus disorder prediction 810 837 - -
Lac3g0340 1252 FunFam Putative cadmium/zinc-transporting ATPase 3 18 91 - -
Lac3g0340 1252 FunFam Copper-transporting ATPase 1, putative 194 308 - -
Lac3g0340 1252 ProSiteProfiles Heavy-metal-associated domain profile. 22 88 IPR006121 GO:0046872(InterPro)
Lac3g0340 1252 ProSitePatterns Anaphylatoxin domain signature. 1198 1232 IPR000020 GO:0005576(InterPro)
Lac3g0340 1252 ProSitePatterns E1-E2 ATPases phosphorylation site. 407 413 IPR018303 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0340 Lac-Chr3:2489555 Lac9g1155 Lac-Chr9:27066782 1.00E-65 dispersed
Lac3g0332 Lac-Chr3:2398385 Lac3g0340 Lac-Chr3:2489555 6.80E-19 proximal
Lac1g3643 Lac-Chr1:55535457 Lac3g0340 Lac-Chr3:2489555 4.50E-69 transposed
Lac2g0496 Lac-Chr2:3613974 Lac3g0340 Lac-Chr3:2489555 7.40E-55 transposed
Lac5g2704 Lac-Chr5:45499992 Lac3g0340 Lac-Chr3:2489555 1.60E-59 transposed
Lac3g0340 Lac-Chr3:2489555 Lac6g2287 Lac-Chr6:40109952 1.60E-294 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0340 K01534 - csv:101211188 1617.44