Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0347 ATGAGAGTCTGCAGATTAGCATTTGATGCTACACAGAGGAATGGGCTTCAGTTTGATTCTCTAGAAATCCGGAGTATTGCAATTGCTTATGGTATGTTTTATGTTTTGGTTGGTATCGAGTCAATTCCGGACAGAGTTTCCAAGTTCAGAGATCACAGAGCAGAGGCAGAGACACAGAGCGGTTCTATTGTGCAACTTGAAGTCACAGTTATCGGTTCTATTGTGCAAATTCTCTATGAGAACACATTGGATATCAATATGAGAGTTGCTGGAAGGAGATTGACCCAGAAGGAATCTGGCAAATGTTCTCACTCCAAGCTGGAAACTGGATCAGAGTTGATTTTACCTCTGAAGTTGAAAAGGTGTAGCAAAATATCCCATTCCAAACAGAAAAAATCAAGAACGAAATCATATGCACAGGCAATTGGTTCAACATTCAAGAGGAGATCTCTTCCTAAATCCTTGAGCAAGGGGAATAAAAATGTGACTATTAGACAACTGGCTGGTAAAAAGTTTCTGCTAAAAAACCTTGATTCAAAATCTTCCAAGGAGTTACTTTTGTCAAAGCTTCAAGGTGGGAAATCCCTGCCATCAAGTAATACAACAGGGAATAAAGAAAAGGTTGAGCCGGTGGCGAAGATAAACCAACAAAGGAAAAGGAGGAAGAACAAAGGAAAAAAGGAAAAAGTAGAGTTAGATGAAGCTTCTCGCCTACAGAGGAGAACAAGATACCTTATAATTAAAATGAAGCTTGAGCAGAACCTTATCGATGCTTACTCTGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAAATTAAGCCCGAAAAGGAACTTCAGAGAGCCAAGAAGCAGATATTAAAGTGCAAACTGGGAATCCGTGATGCTATTCACCAGCTGGATTTGCTTGGTTCAGTAGGATGTATTGAAGACTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAACATATATTCTGTGCAAAATGCAAGTTGCGTGAAGCTTTTCCAGACAATGACATTATACTTTGCGATGGAACATGCAACTGTGCTTTTCACCAAAAATGTCTGGATCCACCATTAGACACGGACAATATTCCTCCAGGAGACCAGGGTTGGTTTTGCAAATTTTGTGAGTGCAAGATGGAAATATTGGAAGGAATGAATGCACATCTTGGTACTCGGTTCACAATGAACATTAGTTGGGAGGACGTTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTGGAAATGCATCACTTAATCACGAGGAAGATTGGCCCTCGGATGATTCTGCAGATGATGACTATGATCCAGATAAGAAGGAGAATGGCTATGGCAATCTAAGTGGGGAAGAAAATGATAATGATGTTTTGGAGGAGTCAAGTAGTTCAACCAGCTTGAGTTGGTCTTTAGATGGCGAGGATTTAATTGATAGAGATGGTACTGGATGTGAAGATCACTTTGGTGCTAGTAGCAGCATAGTTTCTGAAGGATCCAATGAAGAGGGTATCACATGTGGTCGTCGGCAGCGGCAGGCTGTTGATTATAAAAAGTTATATGTCGAAATGTTTGGAAAGGATGCTCCAGCACAAGAACAAGTTAGTGAAGATGAAGACTGGGGACCTGCCAAAAGAAGACGAAGAGAAAAGGAATGTGATGCTGCGAGTACTCTTATGTCTCTTTGTGAAAGTGAAAAAAAGAGTCAGGAGATTGACGTGGAAGCAGAGAAAAAACTTCTCAATTCGCAAAGTAGATCATTTTTCAGAATTCCTCGTTATGCAGTCGAGAAACTTCGCCGAGTGTTTGCTGATAATGAACTTCCCTCTAGAGACGTCAAGGAGAACCTTTCAAAAGAATTGGGTCTTGATGCTGAAAAGGTGAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAAAACAAGAAAGGCTGAGGGAGCAACACAACACCATAGTTCTAATAAGACTTCCAACGAGCCCGGATTAGCAGATGCAAAGGAAATGGCTGCGAATCTTCTTTCATCAGAGGACGCACCAATAAAAGAACTGCAGCTGAAGTCGCACAATTGTCATTACAAGAAAAAGCAGCACAGAAAATCATCACTTGTATCTTCCAACAATAACAAGGATGCTTTTGATTTTGGTGATGATATAAGCTTGAAGAATCTCCTAAAGAATAGAAAAACAAAGGTAAAGAAGAGGGTTAATTTTGTAGCTAGAGGTGGAGGTCAAGAAGCAGAAGTCGAGATGGAGAGACTGTGTAAAATTAAAGGTAGATTAGAGATAATGAAGCAGAAATTACTTAGACTATCATCAAATAAGAAAGATGATGGGATTTTAGATAGGTCAAACATGTTTGAACAGTCTATTGTATATGTTCCTGTGGCAGTGTTAAAGGAAAAAGTTTGA 2406 40.19 MRVCRLAFDATQRNGLQFDSLEIRSIAIAYGMFYVLVGIESIPDRVSKFRDHRAEAETQSGSIVQLEVTVIGSIVQILYENTLDINMRVAGRRLTQKESGKCSHSKLETGSELILPLKLKRCSKISHSKQKKSRTKSYAQAIGSTFKRRSLPKSLSKGNKNVTIRQLAGKKFLLKNLDSKSSKELLLSKLQGGKSLPSSNTTGNKEKVEPVAKINQQRKRRKNKGKKEKVELDEASRLQRRTRYLIIKMKLEQNLIDAYSGEGWKGQSREKIKPEKELQRAKKQILKCKLGIRDAIHQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTDNIPPGDQGWFCKFCECKMEILEGMNAHLGTRFTMNISWEDVFKEEAAFPDGGNASLNHEEDWPSDDSADDDYDPDKKENGYGNLSGEENDNDVLEESSSSTSLSWSLDGEDLIDRDGTGCEDHFGASSSIVSEGSNEEGITCGRRQRQAVDYKKLYVEMFGKDAPAQEQVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSQEIDVEAEKKLLNSQSRSFFRIPRYAVEKLRRVFADNELPSRDVKENLSKELGLDAEKVSKWFKNARYSALKTRKAEGATQHHSSNKTSNEPGLADAKEMAANLLSSEDAPIKELQLKSHNCHYKKKQHRKSSLVSSNNNKDAFDFGDDISLKNLLKNRKTKVKKRVNFVARGGGQEAEVEMERLCKIKGRLEIMKQKLLRLSSNKKDDGILDRSNMFEQSIVYVPVAVLKEKV 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2570253 2578792 + Lag0033875.1 Lac3g0347 600769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0347 801 MobiDBLite consensus disorder prediction 192 233 - -
Lac3g0347 801 ProSitePatterns Zinc finger PHD-type signature. 326 377 IPR019786 -
Lac3g0347 801 MobiDBLite consensus disorder prediction 192 206 - -
Lac3g0347 801 FunFam pathogenesis-related homeodomain protein 582 646 - -
Lac3g0347 801 SMART PHD_3 325 378 IPR001965 -
Lac3g0347 801 SMART HOX_1 582 644 IPR001356 GO:0003677(InterPro)
Lac3g0347 801 MobiDBLite consensus disorder prediction 412 502 - -
Lac3g0347 801 SUPERFAMILY FYVE/PHD zinc finger 316 383 IPR011011 -
Lac3g0347 801 MobiDBLite consensus disorder prediction 641 661 - -
Lac3g0347 801 FunFam pathogenesis-related homeodomain protein-like 317 377 - -
Lac3g0347 801 Pfam PHD-finger 326 377 IPR019787 -
Lac3g0347 801 Gene3D - 582 656 - -
Lac3g0347 801 ProSiteProfiles 'Homeobox' domain profile. 580 640 IPR001356 GO:0003677(InterPro)
Lac3g0347 801 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 119 797 - GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER)
Lac3g0347 801 Pfam Homeodomain 591 635 IPR001356 GO:0003677(InterPro)
Lac3g0347 801 SUPERFAMILY Homeodomain-like 582 645 IPR009057 -
Lac3g0347 801 ProSiteProfiles Zinc finger PHD-type profile. 323 380 IPR019787 -
Lac3g0347 801 CDD homeodomain 588 641 IPR001356 GO:0003677(InterPro)
Lac3g0347 801 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 374 IPR013083 -
Lac3g0347 801 CDD PHD_PRHA_like 325 377 IPR045876 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0347 Lac-Chr3:2570253 Lac5g2581 Lac-Chr5:44314814 3.40E-59 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23565 PF00628 PHD 1.60E-09 CL0390 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0347 - - - 0.0