Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac3g0347 | ATGAGAGTCTGCAGATTAGCATTTGATGCTACACAGAGGAATGGGCTTCAGTTTGATTCTCTAGAAATCCGGAGTATTGCAATTGCTTATGGTATGTTTTATGTTTTGGTTGGTATCGAGTCAATTCCGGACAGAGTTTCCAAGTTCAGAGATCACAGAGCAGAGGCAGAGACACAGAGCGGTTCTATTGTGCAACTTGAAGTCACAGTTATCGGTTCTATTGTGCAAATTCTCTATGAGAACACATTGGATATCAATATGAGAGTTGCTGGAAGGAGATTGACCCAGAAGGAATCTGGCAAATGTTCTCACTCCAAGCTGGAAACTGGATCAGAGTTGATTTTACCTCTGAAGTTGAAAAGGTGTAGCAAAATATCCCATTCCAAACAGAAAAAATCAAGAACGAAATCATATGCACAGGCAATTGGTTCAACATTCAAGAGGAGATCTCTTCCTAAATCCTTGAGCAAGGGGAATAAAAATGTGACTATTAGACAACTGGCTGGTAAAAAGTTTCTGCTAAAAAACCTTGATTCAAAATCTTCCAAGGAGTTACTTTTGTCAAAGCTTCAAGGTGGGAAATCCCTGCCATCAAGTAATACAACAGGGAATAAAGAAAAGGTTGAGCCGGTGGCGAAGATAAACCAACAAAGGAAAAGGAGGAAGAACAAAGGAAAAAAGGAAAAAGTAGAGTTAGATGAAGCTTCTCGCCTACAGAGGAGAACAAGATACCTTATAATTAAAATGAAGCTTGAGCAGAACCTTATCGATGCTTACTCTGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAAATTAAGCCCGAAAAGGAACTTCAGAGAGCCAAGAAGCAGATATTAAAGTGCAAACTGGGAATCCGTGATGCTATTCACCAGCTGGATTTGCTTGGTTCAGTAGGATGTATTGAAGACTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAACATATATTCTGTGCAAAATGCAAGTTGCGTGAAGCTTTTCCAGACAATGACATTATACTTTGCGATGGAACATGCAACTGTGCTTTTCACCAAAAATGTCTGGATCCACCATTAGACACGGACAATATTCCTCCAGGAGACCAGGGTTGGTTTTGCAAATTTTGTGAGTGCAAGATGGAAATATTGGAAGGAATGAATGCACATCTTGGTACTCGGTTCACAATGAACATTAGTTGGGAGGACGTTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTGGAAATGCATCACTTAATCACGAGGAAGATTGGCCCTCGGATGATTCTGCAGATGATGACTATGATCCAGATAAGAAGGAGAATGGCTATGGCAATCTAAGTGGGGAAGAAAATGATAATGATGTTTTGGAGGAGTCAAGTAGTTCAACCAGCTTGAGTTGGTCTTTAGATGGCGAGGATTTAATTGATAGAGATGGTACTGGATGTGAAGATCACTTTGGTGCTAGTAGCAGCATAGTTTCTGAAGGATCCAATGAAGAGGGTATCACATGTGGTCGTCGGCAGCGGCAGGCTGTTGATTATAAAAAGTTATATGTCGAAATGTTTGGAAAGGATGCTCCAGCACAAGAACAAGTTAGTGAAGATGAAGACTGGGGACCTGCCAAAAGAAGACGAAGAGAAAAGGAATGTGATGCTGCGAGTACTCTTATGTCTCTTTGTGAAAGTGAAAAAAAGAGTCAGGAGATTGACGTGGAAGCAGAGAAAAAACTTCTCAATTCGCAAAGTAGATCATTTTTCAGAATTCCTCGTTATGCAGTCGAGAAACTTCGCCGAGTGTTTGCTGATAATGAACTTCCCTCTAGAGACGTCAAGGAGAACCTTTCAAAAGAATTGGGTCTTGATGCTGAAAAGGTGAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAAAACAAGAAAGGCTGAGGGAGCAACACAACACCATAGTTCTAATAAGACTTCCAACGAGCCCGGATTAGCAGATGCAAAGGAAATGGCTGCGAATCTTCTTTCATCAGAGGACGCACCAATAAAAGAACTGCAGCTGAAGTCGCACAATTGTCATTACAAGAAAAAGCAGCACAGAAAATCATCACTTGTATCTTCCAACAATAACAAGGATGCTTTTGATTTTGGTGATGATATAAGCTTGAAGAATCTCCTAAAGAATAGAAAAACAAAGGTAAAGAAGAGGGTTAATTTTGTAGCTAGAGGTGGAGGTCAAGAAGCAGAAGTCGAGATGGAGAGACTGTGTAAAATTAAAGGTAGATTAGAGATAATGAAGCAGAAATTACTTAGACTATCATCAAATAAGAAAGATGATGGGATTTTAGATAGGTCAAACATGTTTGAACAGTCTATTGTATATGTTCCTGTGGCAGTGTTAAAGGAAAAAGTTTGA | 2406 | 40.19 | MRVCRLAFDATQRNGLQFDSLEIRSIAIAYGMFYVLVGIESIPDRVSKFRDHRAEAETQSGSIVQLEVTVIGSIVQILYENTLDINMRVAGRRLTQKESGKCSHSKLETGSELILPLKLKRCSKISHSKQKKSRTKSYAQAIGSTFKRRSLPKSLSKGNKNVTIRQLAGKKFLLKNLDSKSSKELLLSKLQGGKSLPSSNTTGNKEKVEPVAKINQQRKRRKNKGKKEKVELDEASRLQRRTRYLIIKMKLEQNLIDAYSGEGWKGQSREKIKPEKELQRAKKQILKCKLGIRDAIHQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTDNIPPGDQGWFCKFCECKMEILEGMNAHLGTRFTMNISWEDVFKEEAAFPDGGNASLNHEEDWPSDDSADDDYDPDKKENGYGNLSGEENDNDVLEESSSSTSLSWSLDGEDLIDRDGTGCEDHFGASSSIVSEGSNEEGITCGRRQRQAVDYKKLYVEMFGKDAPAQEQVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSQEIDVEAEKKLLNSQSRSFFRIPRYAVEKLRRVFADNELPSRDVKENLSKELGLDAEKVSKWFKNARYSALKTRKAEGATQHHSSNKTSNEPGLADAKEMAANLLSSEDAPIKELQLKSHNCHYKKKQHRKSSLVSSNNNKDAFDFGDDISLKNLLKNRKTKVKKRVNFVARGGGQEAEVEMERLCKIKGRLEIMKQKLLRLSSNKKDDGILDRSNMFEQSIVYVPVAVLKEKV | 801 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2570253 | 2578792 | + | Lag0033875.1 | Lac3g0347 | 600769 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac3g0347 | 801 | MobiDBLite | consensus disorder prediction | 192 | 233 | - | - | |
Lac3g0347 | 801 | ProSitePatterns | Zinc finger PHD-type signature. | 326 | 377 | IPR019786 | - | |
Lac3g0347 | 801 | MobiDBLite | consensus disorder prediction | 192 | 206 | - | - | |
Lac3g0347 | 801 | FunFam | pathogenesis-related homeodomain protein | 582 | 646 | - | - | |
Lac3g0347 | 801 | SMART | PHD_3 | 325 | 378 | IPR001965 | - | |
Lac3g0347 | 801 | SMART | HOX_1 | 582 | 644 | IPR001356 | GO:0003677(InterPro) | |
Lac3g0347 | 801 | MobiDBLite | consensus disorder prediction | 412 | 502 | - | - | |
Lac3g0347 | 801 | SUPERFAMILY | FYVE/PHD zinc finger | 316 | 383 | IPR011011 | - | |
Lac3g0347 | 801 | MobiDBLite | consensus disorder prediction | 641 | 661 | - | - | |
Lac3g0347 | 801 | FunFam | pathogenesis-related homeodomain protein-like | 317 | 377 | - | - | |
Lac3g0347 | 801 | Pfam | PHD-finger | 326 | 377 | IPR019787 | - | |
Lac3g0347 | 801 | Gene3D | - | 582 | 656 | - | - | |
Lac3g0347 | 801 | ProSiteProfiles | 'Homeobox' domain profile. | 580 | 640 | IPR001356 | GO:0003677(InterPro) | |
Lac3g0347 | 801 | PANTHER | POLYCOMB-LIKE TRANSCRIPTION FACTOR | 119 | 797 | - | GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER) | |
Lac3g0347 | 801 | Pfam | Homeodomain | 591 | 635 | IPR001356 | GO:0003677(InterPro) | |
Lac3g0347 | 801 | SUPERFAMILY | Homeodomain-like | 582 | 645 | IPR009057 | - | |
Lac3g0347 | 801 | ProSiteProfiles | Zinc finger PHD-type profile. | 323 | 380 | IPR019787 | - | |
Lac3g0347 | 801 | CDD | homeodomain | 588 | 641 | IPR001356 | GO:0003677(InterPro) | |
Lac3g0347 | 801 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 317 | 374 | IPR013083 | - | |
Lac3g0347 | 801 | CDD | PHD_PRHA_like | 325 | 377 | IPR045876 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac3g0347 | Lac-Chr3:2570253 | Lac5g2581 | Lac-Chr5:44314814 | 3.40E-59 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23565 | PF00628 | PHD | 1.60E-09 | CL0390 | Lac | TF |
Pathway information
