Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0353 ATGGAAAGTATCGGAGACGATTACATGGCTTACTTGGGGAACAGCATGTTCATAGCCGAAGAGCTCGACAGTTGGGGATTCGACGAGCCGGTTTCCGGCTACTATGATTCGAGTTCGCCGGAGGGAGTTCTGTCGCCGTCGGCGGCTTCGAAGAACATCGTATCGGAGAGGAATAGGAGGAGGAAGCTCAACGAGAGGCTTTTTGCTCTTCGATCGGTCGTTCCCAATATCACTAAGATGGATAAGGCTTCCATTATAAAAGATGCAATCGATTACATCCAAGATTTGCATGAACAAGAGAGGAGGATTCAAGCTGAAATTTACGAGCTCGAATCGGGTAAGTTGAAGAAGATAACAGGGTATGAGTTTGATCAGGAGCTGCCATTGTTGCTGAGATCAAAGAGGAAGAAAACTGAGAAGTTCATCTATGATTCTCCAGCTTCAAGAACTTCCCCCATTGAAGTGCTGGATTTGAGTGTGACATATATGGGGGAAAGAACAATGGTGGTGAGCTTGACATGCTGTAAAAGGGCAGATTCAATGGTTAAACTATGTGAAGTTTTTGAATCACTGAAGCTCAAGATCATTACAGCCAATATCACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTCTTCATTGAGGCTGAGCAAGAGGAGAGAGAATACTTGAAGATTAAAATAGAAACAGCCATTGCAGGTCTTAGAGATCCACAGAGCCCCATGAGCATCTGA 732 44.67 MESIGDDYMAYLGNSMFIAEELDSWGFDEPVSGYYDSSSPEGVLSPSAASKNIVSERNRRRKLNERLFALRSVVPNITKMDKASIIKDAIDYIQDLHEQERRIQAEIYELESGKLKKITGYEFDQELPLLLRSKRKKTEKFIYDSPASRTSPIEVLDLSVTYMGERTMVVSLTCCKRADSMVKLCEVFESLKLKIITANITAVSGRLLKTVFIEAEQEEREYLKIKIETAIAGLRDPQSPMSI 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2623111 2626504 - Lag0033881.1 Lac3g0353 600775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0353 243 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 44 114 - -
Lac3g0353 243 SMART finulus 53 102 IPR011598 GO:0046983(InterPro)
Lac3g0353 243 Gene3D - 45 113 IPR036638 GO:0046983(InterPro)
Lac3g0353 243 Pfam Helix-loop-helix DNA-binding domain 53 97 IPR011598 GO:0046983(InterPro)
Lac3g0353 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983(InterPro)
Lac3g0353 243 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 47 222 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lac3g0353 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 111 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0353 Lac-Chr3:2623111 Lac6g2250 Lac-Chr6:39503693 2.40E-61 dispersed
Lac3g0353 Lac-Chr3:2623111 Lac4g1294 Lac-Chr4:30985873 1.80E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23567 PF00010 HLH 5.40E-12 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0353 - - - 0.0