Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0363 ATGGCCGTCGATCTCGCCGCCTTTCCGCCCAACTTCGACGATCAAGCCGCCATCCAAGAAGCTGCCTCCGCCGGTTTACAGAGCATGGAGCATCTAATCCGCCTCTTATCCAAACAACAATCCTCTCCGACTCTCAACCACCACCACCACCATCTCGACTGCTCCCAAGTCACCGATTTCACCGTCTCCAAATTCAAGCGAGTCATCTCCCTCCTCAACCGGACCGGCCACGCCAGGTTCCGTCGCGGCCCTTCCCCTGTTTCCGATTCCCCCAATCCCGTCCTCAATTCCCTCGATCCGCCGCTCAAATCCCCCAATCCCACCTCCACAGTCGATTTCCTCAAACCCAATCTCACTCCTCCGCCCATATCGCCCGATTCCAGGGCTCCGACTGAGTCCACCACGACGTCGTCTTTCATGTCCACCGTCACCGCCGACGGCAGCGTCTCGAACGGGAAGCTGGGTCTCTCACTCTTCACGACGCCGGCGGTCTCCTCCGGTAAGCCGCCGCTGTCGTCGAAGAGAAAGTGCGAAGATAGCTCTCGATTGGCTTGCAAGATCTCCTCGAAGCCCTGCCACTGCGCGAAGCGAAGGAAATCTGGAGAGAAGAAGACGGTACGAGTTCCGGCGATCAGTTCTAAGATCGCCGATATACCTTCCGATGAATACTCCTGGAGAAAGTACGGCCAAAAGCCCATCAAAGGCTCGCCTTATCCCAGAGGGTATTATAGATGCAGCACCGTCAAAGGATGTCCGGCGAGGAAGAAAGTGGAGAGGGCTCGTGACGATCCGGCGATGCTCCTCGTAACTTACGACGGCGATCACCGTCACCCGCAGGCTACGGTGCCCAGGGCGGTGACCGATGCCAGCGTCGGCTTCGTTTCCCGGAAGTGTTGA 897 58.19 MAVDLAAFPPNFDDQAAIQEAASAGLQSMEHLIRLLSKQQSSPTLNHHHHHLDCSQVTDFTVSKFKRVISLLNRTGHARFRRGPSPVSDSPNPVLNSLDPPLKSPNPTSTVDFLKPNLTPPPISPDSRAPTESTTTSSFMSTVTADGSVSNGKLGLSLFTTPAVSSGKPPLSSKRKCEDSSRLACKISSKPCHCAKRRKSGEKKTVRVPAISSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKKVERARDDPAMLLVTYDGDHRHPQATVPRAVTDASVGFVSRKC 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2742618 2743678 + Lag0033891.1 Lac3g0363 600785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0363 298 MobiDBLite consensus disorder prediction 89 115 - -
Lac3g0363 298 Pfam Plant zinc cluster domain 174 217 IPR018872 -
Lac3g0363 298 SMART WRKY_cls 219 279 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac3g0363 298 Pfam WRKY DNA -binding domain 221 278 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac3g0363 298 ProSiteProfiles WRKY domain profile. 214 280 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac3g0363 298 MobiDBLite consensus disorder prediction 78 138 - -
Lac3g0363 298 SUPERFAMILY WRKY DNA-binding domain 217 279 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac3g0363 298 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 18 281 IPR044810 GO:0003700(InterPro)
Lac3g0363 298 FunFam WRKY transcription factor 65 203 280 - -
Lac3g0363 298 Gene3D WRKY domain 207 280 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0715 Lac-Chr13:5468131 Lac3g0363 Lac-Chr3:2742618 5.10E-43 dispersed
Lac1g2593 Lac-Chr1:47293777 Lac3g0363 Lac-Chr3:2742618 9.60E-42 dispersed
Lac2g0685 Lac-Chr2:5150702 Lac3g0363 Lac-Chr3:2742618 4.70E-74 dispersed
Lac3g0363 Lac-Chr3:2742618 Lac9g1320 Lac-Chr9:30464887 1.40E-47 dispersed
Lac3g0363 Lac-Chr3:2742618 Lac2g0348 Lac-Chr2:2618629 3.30E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23568 PF03106 WRKY 1.30E-25 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0363 - - - 0.0