Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac3g0363 | ATGGCCGTCGATCTCGCCGCCTTTCCGCCCAACTTCGACGATCAAGCCGCCATCCAAGAAGCTGCCTCCGCCGGTTTACAGAGCATGGAGCATCTAATCCGCCTCTTATCCAAACAACAATCCTCTCCGACTCTCAACCACCACCACCACCATCTCGACTGCTCCCAAGTCACCGATTTCACCGTCTCCAAATTCAAGCGAGTCATCTCCCTCCTCAACCGGACCGGCCACGCCAGGTTCCGTCGCGGCCCTTCCCCTGTTTCCGATTCCCCCAATCCCGTCCTCAATTCCCTCGATCCGCCGCTCAAATCCCCCAATCCCACCTCCACAGTCGATTTCCTCAAACCCAATCTCACTCCTCCGCCCATATCGCCCGATTCCAGGGCTCCGACTGAGTCCACCACGACGTCGTCTTTCATGTCCACCGTCACCGCCGACGGCAGCGTCTCGAACGGGAAGCTGGGTCTCTCACTCTTCACGACGCCGGCGGTCTCCTCCGGTAAGCCGCCGCTGTCGTCGAAGAGAAAGTGCGAAGATAGCTCTCGATTGGCTTGCAAGATCTCCTCGAAGCCCTGCCACTGCGCGAAGCGAAGGAAATCTGGAGAGAAGAAGACGGTACGAGTTCCGGCGATCAGTTCTAAGATCGCCGATATACCTTCCGATGAATACTCCTGGAGAAAGTACGGCCAAAAGCCCATCAAAGGCTCGCCTTATCCCAGAGGGTATTATAGATGCAGCACCGTCAAAGGATGTCCGGCGAGGAAGAAAGTGGAGAGGGCTCGTGACGATCCGGCGATGCTCCTCGTAACTTACGACGGCGATCACCGTCACCCGCAGGCTACGGTGCCCAGGGCGGTGACCGATGCCAGCGTCGGCTTCGTTTCCCGGAAGTGTTGA | 897 | 58.19 | MAVDLAAFPPNFDDQAAIQEAASAGLQSMEHLIRLLSKQQSSPTLNHHHHHLDCSQVTDFTVSKFKRVISLLNRTGHARFRRGPSPVSDSPNPVLNSLDPPLKSPNPTSTVDFLKPNLTPPPISPDSRAPTESTTTSSFMSTVTADGSVSNGKLGLSLFTTPAVSSGKPPLSSKRKCEDSSRLACKISSKPCHCAKRRKSGEKKTVRVPAISSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKKVERARDDPAMLLVTYDGDHRHPQATVPRAVTDASVGFVSRKC | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2742618 | 2743678 | + | Lag0033891.1 | Lac3g0363 | 600785 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac3g0363 | 298 | MobiDBLite | consensus disorder prediction | 89 | 115 | - | - | |
Lac3g0363 | 298 | Pfam | Plant zinc cluster domain | 174 | 217 | IPR018872 | - | |
Lac3g0363 | 298 | SMART | WRKY_cls | 219 | 279 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac3g0363 | 298 | Pfam | WRKY DNA -binding domain | 221 | 278 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac3g0363 | 298 | ProSiteProfiles | WRKY domain profile. | 214 | 280 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac3g0363 | 298 | MobiDBLite | consensus disorder prediction | 78 | 138 | - | - | |
Lac3g0363 | 298 | SUPERFAMILY | WRKY DNA-binding domain | 217 | 279 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac3g0363 | 298 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 18 | 281 | IPR044810 | GO:0003700(InterPro) | |
Lac3g0363 | 298 | FunFam | WRKY transcription factor 65 | 203 | 280 | - | - | |
Lac3g0363 | 298 | Gene3D | WRKY domain | 207 | 280 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g0715 | Lac-Chr13:5468131 | Lac3g0363 | Lac-Chr3:2742618 | 5.10E-43 | dispersed | |
Lac1g2593 | Lac-Chr1:47293777 | Lac3g0363 | Lac-Chr3:2742618 | 9.60E-42 | dispersed | |
Lac2g0685 | Lac-Chr2:5150702 | Lac3g0363 | Lac-Chr3:2742618 | 4.70E-74 | dispersed | |
Lac3g0363 | Lac-Chr3:2742618 | Lac9g1320 | Lac-Chr9:30464887 | 1.40E-47 | dispersed | |
Lac3g0363 | Lac-Chr3:2742618 | Lac2g0348 | Lac-Chr2:2618629 | 3.30E-52 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23568 | PF03106 | WRKY | 1.30E-25 | CL0274 | Lac | TF |
Pathway information
