Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0372 ATGGCAGACCAAGATGAGCTCTGCAACATCAGGCTTGGCCTTGGCCTTGGCTTGGGATTTGGCGAATATGTCCCAAAAAAGATGCAGAAAATCAACAACAACAACACCCCCAAATTCTTCTCTGATCGTCTCTCCTTCACTCTCATTCCAAAAGAGGAATCCGCCGTTAACAACAACAACATGGAGCTCGAAGAATTAGCTAATGAAACTTCTCAAGATTCATCCTTTGGAAGAAGAGATAATAACAATTCTTCCAACAATAATAATACTAACAATTCTTACAACGCCATTAGTGGATCAGAAAGAGAGAGGAAAAAGCTTAGGCTTTCCAAAGAACAGTCCACTTTGCTCGAAGAAAACTTCAAACTTCACACCACTTTGAATCCGGCTCAGAAGCAGGCACTTGCCCAACAATTAAACCTCAAAACTCGACAAGTGGAAGTTTGGTTTCAAAACAGACGTGCAAGGACGAAATTGAAACAAACGGAAGTAGATTGCGAGTTTTTGAAGAAATGTTGCGAAAGGTTGAACGAAGAGAATCGAAGGTTGAAGAAAGAGTTGCATGAATTAAGATCCATAAAACTTGGAGCTTCACAGTTGTATATTCAGCTACCCAAGGCGGCGACGCTCACAATTTGCCCTTCATGCGACAAAATTACGAGGACGGCCGCCGCCAACGCCGCCGTGGAGGCCAAATCTCCGCCACAATAA 711 43.18 MADQDELCNIRLGLGLGLGFGEYVPKKMQKINNNNTPKFFSDRLSFTLIPKEESAVNNNNMELEELANETSQDSSFGRRDNNNSSNNNNTNNSYNAISGSERERKKLRLSKEQSTLLEENFKLHTTLNPAQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLTICPSCDKITRTAAANAAVEAKSPPQ 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2793190 2794235 + Lag0033900.1 Lac3g0372 600794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0372 236 Pfam Homeodomain 104 158 IPR001356 GO:0003677(InterPro)
Lac3g0372 236 Gene3D - 97 165 - -
Lac3g0372 236 SMART HOX_1 102 164 IPR001356 GO:0003677(InterPro)
Lac3g0372 236 SMART halz 160 203 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac3g0372 236 ProSiteProfiles 'Homeobox' domain profile. 100 160 IPR001356 GO:0003677(InterPro)
Lac3g0372 236 Coils Coil 159 193 - -
Lac3g0372 236 MobiDBLite consensus disorder prediction 66 105 - -
Lac3g0372 236 MobiDBLite consensus disorder prediction 66 98 - -
Lac3g0372 236 ProSitePatterns 'Homeobox' domain signature. 135 158 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac3g0372 236 CDD homeodomain 104 161 IPR001356 GO:0003677(InterPro)
Lac3g0372 236 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 11 225 IPR050762 -
Lac3g0372 236 Pfam Homeobox associated leucine zipper 160 192 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac3g0372 236 SUPERFAMILY Homeodomain-like 88 161 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0372 Lac-Chr3:2793190 Lac4g2689 Lac-Chr4:45861947 1.80E-40 dispersed
Lac3g0372 Lac-Chr3:2793190 Lac1g2717 Lac-Chr1:48403763 4.70E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23569 PF00046 Homeodomain 1.50E-15 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0372 K09338 - csv:101203427 259.996