Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac3g0373 | ATGAGAATTTGTAATATCCGAGGGAATTTTATACTTCACCACTGGTTTACCTCTTTCGTCAAAAACTATGTTGGTTTTGTGTCATCATCTGTTCAGCTCAAGCATTTTCAGCACACTCCAACGATCAGCTTAACTTCCAACACAAAATGCAAAGATAATATAACAGATAACTCCAGATGCAAAGACAATAAAACAGATAACTCTAGAAGCAAAGAGAATAAAACAGAGAAGGGGAAACCTGAATTGAATATCTGGTTGCAAGCTTCTTCCTTTATGTTTTGCAGGCCAACTGAGGAATGCCTCGCCGAATACTCGAAGATATGGAAACTGAACATTAACTTTGGCCTTTGTCTTGGCAAGAAGTTTCAAATTGTAGGAGCTTTCCCTGTTTCTTGTAATGTTCATACTGATTCAATTTGCTCGTTGAAATCAACAAAATTTACATGCTGTTGTTTCAGGAACCTCTCAAAATCAGATGATGAGCTCCTCATCTGTGATAAATGCTCCAGTTTTCTTCTTTTTCCTTGGGATGCTAGCTGTGCTGCTTCAGCAGATTTGTTAAGCGAGAACCTCCACTCAATAAGTTACTTTGACTTTCACACACTGAAAAATGCAACAAAGAATTTTAATCCGGAATATCTTCTGGGCCAGGGAGGATTTGGACCTGTCTATCTGGGAACGCTAGAAGATGGAAGATTGGTTGCAATTAAGAAACTTTCACTTAACAAATCCCAACAAGGAGAACCAGAATTTTTATCAGAGGTCAGACTGATAACAAGCATCCAACACAAGAACCTTGTTCGCCTGCTTGGTTGTTGCTCAGATGGACCTCAACGGCTTCTCGTGTATGAATACATGGAGAACAGGAGCTTGAATCTCATAATATATGGGGGAAGTGACCAATTCCTCAACTGGAACACCAGACTGAAGATTATCAGAGGCATTGCCAAAGGGTTGCAGTATCTACATGAGGATTCCCATCTAAGAATTATTCACCGAGACATCAAAGCAAGCAACATTCTTCTTGATGACAAATTTCAACCGAAGATTGGTGATTTTGGGCTGGCCAGGTTCTTCCCTGATGACCAAGCTTACCTTAGCACTACATTTGCTGGAACTCTAGGTTACACAGCACCAGAATATGCAATTAGAGGAGAACTGTCAGAGAAGGCCGATGTATACAGTTTTGGAGTTCTTGTGCTTGAAATCATCAGTGGCAGAAAAAACACAAATCTTTCTTTACCAACCGAAATGCAGTATCTTCCTGAATATGCATGGAAACTATATGAGAGGTCTGCAGTAATCGAACTTGTGGATCCAAAGATGAAGGATGGTGAATATGCGGAGAAGGATGTAGCACATGCAATTCAGGTTGCTTTGTTGTGTCTTCAGCCTCATGGAAGTCTGAGACCTGCAATGTCTGAGATTGTTGCCATGCTAACATACAAATTTGAAATCGTTCAAACACCTTTGAAACCAGCTTTCTTGGAAAGAAGGCATAGAAAGAACAGAGATCTCTCGTTGACTAATTATGCAGATACTATTCCTTCTCCTTTACAGTGA | 1563 | 40.12 | MRICNIRGNFILHHWFTSFVKNYVGFVSSSVQLKHFQHTPTISLTSNTKCKDNITDNSRCKDNKTDNSRSKENKTEKGKPELNIWLQASSFMFCRPTEECLAEYSKIWKLNINFGLCLGKKFQIVGAFPVSCNVHTDSICSLKSTKFTCCCFRNLSKSDDELLICDKCSSFLLFPWDASCAASADLLSENLHSISYFDFHTLKNATKNFNPEYLLGQGGFGPVYLGTLEDGRLVAIKKLSLNKSQQGEPEFLSEVRLITSIQHKNLVRLLGCCSDGPQRLLVYEYMENRSLNLIIYGGSDQFLNWNTRLKIIRGIAKGLQYLHEDSHLRIIHRDIKASNILLDDKFQPKIGDFGLARFFPDDQAYLSTTFAGTLGYTAPEYAIRGELSEKADVYSFGVLVLEIISGRKNTNLSLPTEMQYLPEYAWKLYERSAVIELVDPKMKDGEYAEKDVAHAIQVALLCLQPHGSLRPAMSEIVAMLTYKFEIVQTPLKPAFLERRHRKNRDLSLTNYADTIPSPLQ | 520 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2804742 | 2807053 | + | Lag0033901.1 | Lac3g0373 | 600795 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac3g0373 | 520 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 330 | 342 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac3g0373 | 520 | ProSiteProfiles | Protein kinase domain profile. | 209 | 485 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac3g0373 | 520 | FunFam | Cysteine-rich receptor-like protein kinase 2 | 286 | 488 | - | - | |
Lac3g0373 | 520 | CDD | STKc_IRAK | 215 | 481 | - | - | |
Lac3g0373 | 520 | FunFam | Cysteine-rich receptor-like protein kinase 10 | 175 | 285 | - | - | |
Lac3g0373 | 520 | PANTHER | CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 | 84 | 503 | IPR052059 | GO:0004674(PANTHER)|GO:0006468(PANTHER) | |
Lac3g0373 | 520 | Gene3D | Transferase(Phosphotransferase) domain 1 | 286 | 489 | - | - | |
Lac3g0373 | 520 | SMART | serkin_6 | 209 | 482 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac3g0373 | 520 | SUPERFAMILY | Protein kinase-like (PK-like) | 189 | 481 | IPR011009 | - | |
Lac3g0373 | 520 | Gene3D | Phosphorylase Kinase; domain 1 | 181 | 285 | - | - | |
Lac3g0373 | 520 | Pfam | Protein kinase domain | 213 | 412 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac3g0373 | Lac-Chr3:2804742 | Lac5g2414 | Lac-Chr5:42790269 | 4.40E-84 | dispersed | |
Lac3g0373 | Lac-Chr3:2804742 | Lac13g0181 | Lac-Chr13:1270615 | 4.30E-79 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86056 | PF00069 | Pkinase | 4.70E-47 | CL0016 | Lac | PK |
Pathway information
