Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0375 ATGGGTGTCCTTCCCAATCCCTTCTCCTTCTTCTCTCTGATTTTCCTCTTCACCGTCGTCTCTCCGGCCACCGCCTCTGCCGGCGACGGAGCTCTCAAGCTACTCCTTCCCCACCCATTTCTGTATCGCTTCAAGGCCATAGAGGAAACTGTCTTTGTTGCTTCTCCATCTCCGCCGCCGCCGCCGTTGCCCTCTGCTCCTCCACCGGAGGAGAAACCCATCTACTCTCCATTCCGCCCGAGCATGGCGGTGGTGGTCGGCGTTCTGACCACCACTTTCTCCATCACGTTCCTTCTCCTTCTCTACGCCAAGCACTGCAAGCGTGGGAATGCGGCGGTGGTCGGATACTCGCGACACCCGAATTCGATGATGGGCGTTCCGAGCTTCACAACGAGGAAGAACTCCGGCATCGACCAAGCGGTAATCGAATCGCTGCCGATTTTCCGATTCGGGTCGTTGAGCGGGCAGAAGGAAGGGCTCGAATGCGCCGTTTGCCTCAACAAATTCGAGCCGACGGAGATTCTCAGACTCCTCCCGAAATGCAAACATGCCTTCCATGTCGAATGCGTCGATACTTGGCTCGACGCCCACTCCACCTGCCCTCTCTGCCGCTACAGAGTCGACCCCGAGGACGTCTTATTAGTCGAGGACGTCAATTTATTACTCCACAATCCCCCGCCGCCGCCGCCGCTGCGGGATTCAAAGTCAAACGATGTAGTGTTGAACATAGAACAGGGGAGACGAAGCGGCAAAGCTGGATCCGGTAGACTCTCCGGCAGACACTCCTCAGTGGGCGAGAAGCGAACCGGCGAGTCCAGCCACCGGGATCCGGCATTGTTGAGACGGTCACTCGATAGCAAGAGAACTGCGACGGTGGCAGTCGGTTGCTTTGATCGGCACCGGAAGGACGGGCTACTTCTGGCGGAGGAGAAAACGAATGAGAAGAGATTGGAGCACCGGATCATAGTATCGCCGAGGAGGGCGGCAGTGGTGCAGAAGCAGCAGAGATGGAGCGATGTAGAAGCGTCGGATCTGCTGTATCTACGGTCAGAAATGATAATATCTGACAGCCGCAGGTTCTCGGTAGCTTCATTACCACCGGAATTAAAGCGACAGCGACGGATGGGGATGATGGGGAAGCAGGCCGGAAAAGGGACCGGGATGATTATGGCAGATGTGTAA 1182 56.77 MGVLPNPFSFFSLIFLFTVVSPATASAGDGALKLLLPHPFLYRFKAIEETVFVASPSPPPPPLPSAPPPEEKPIYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAAVVGYSRHPNSMMGVPSFTTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNKFEPTEILRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVEDVNLLLHNPPPPPPLRDSKSNDVVLNIEQGRRSGKAGSGRLSGRHSSVGEKRTGESSHRDPALLRRSLDSKRTATVAVGCFDRHRKDGLLLAEEKTNEKRLEHRIIVSPRRAAVVQKQQRWSDVEASDLLYLRSEMIISDSRRFSVASLPPELKRQRRMGMMGKQAGKGTGMIMADV 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2815827 2817008 - Lag0033903.1 Lac3g0375 600797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0375 393 FunFam RING-H2 finger protein ATL43 137 211 - -
Lac3g0375 393 CDD RING-H2_EL5-like 161 204 - -
Lac3g0375 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 59 361 - -
Lac3g0375 393 SMART ring_2 162 203 IPR001841 -
Lac3g0375 393 SUPERFAMILY RING/U-box 142 209 - -
Lac3g0375 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 211 IPR013083 -
Lac3g0375 393 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Lac3g0375 393 Pfam Ring finger domain 161 204 IPR001841 -
Lac3g0375 393 MobiDBLite consensus disorder prediction 245 280 - -
Lac3g0375 393 MobiDBLite consensus disorder prediction 261 280 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0375 Lac-Chr3:2815827 Lac3g0936 Lac-Chr3:7566744 1.60E-41 dispersed
Lac3g0375 Lac-Chr3:2815827 Lac7g0421 Lac-Chr7:3278380 1.60E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0375 K19041 - csv:101203916 578.556