Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0397 ATGGCAGGCCCATCTCCGCCTTCGTCGCCGGCCACCGCCATGAGCGTCATTCTGATTTTGATCTCGATGGAGGTCGTATTTGTGGCTTGGAGTGCTTCCACAGACGGCGAAGCGCTTCTCAAGTTCAAAGGGTCTCTGGAAATCAGCAACGATGCGTTGGGCAGTTGGGCTGCCGGGTCTTCCCCTTGCTCCGGCGATAAGGCGAATTGGGTCGGAGTTCTTTGCGAGAAGGGAAATGTTTGGGGATTGAAACTTGAGAACATGGGGCTCAAGGGCAACATTGACATTGAGTCTCTGGAGGGGGTGCCCCAATTAAGGGCCCTTAGCCTTATGAACAACGAATTTGAGGGCTCTTTGCCGGACGTCAAGAGACTTGGGGCTCTGAAAGCTCTGTATTTGTCACGAAACCGCTTCTCAGGGAACATTCCCGGTGACAAATTCTTGAGCATGTTGTCCTTGAAGAAGGTGCATTTGGCAAACAACCAGTTCGAGGGTCAGATTCCTTGGTCCTTGGTTGAGCTGCCTCGCCTCTTGGAGTTGAGGCTTGAAGGGAACAAGTTTTCTGGCCAAATTCCCAATTTTCAGCAGAACACTTTGAAGGCCTTTAATGTCTCTAATAACGATCAACTTCATGGCCAAATCCCACGTTCCCTCGCCCAAATCGATCCATCCTCCTTTTCAGGCATTGAAGGTTTATGTGGAATGCCACTTGACAAACCATGCAACAGTACAAAGATGCCCTCAATTGCGAGCATCATAATGGTTTCAATAGCTGTGACAGCGGCTCTACTTGCCATCGGTGCAGGAATAGTCATCCTTAGCCGTCGAAACCAATCATCTCCTTGCCAAGAGAGTCCAGCTCACAAATCTCCAAGTGCCAGTCAAGGTCCAGCAGTCGGGTCGAAGTCACCGGACTGCGGCTCGAGCCATGGAAGCTCGGGTAAACGGGCACCCGAGAGTGCTAAATTGTCATTTGTAAGAGATGATTTAGAGAAGTTTGATTTATCAGACTTGCTTAAAGCCTCTGCAGAAATCCTAGGAAGTGGGTGCTTTGGTTCTTCTTACAAAGCAGCCTTGTCCAACGGACCTGTGATGGTTGTAAAGAGGTTTAAGCAAATGAACAATGTGGATAGAGAGGAATTCCAAGAACATATGAGGAGAATTGGAAGGTTGAAACACGCCAACTTGCTTCCTCTCGTGGCCTACTACTACAAAAGGGAAGAGAAGCTTCTCATTACGGACTTTGTTGAGAAGGGTAGCTTGGCCGTTCAACTTCATGGGCACAAAGCCGTGGGTCAACCAGCCCTGGATTGGCCTGCAAGGTTGAAGATCATCAAGGGCATTGCAAAGGGTCTTCGCTATCTCTACGCAGAACTTCCAAGTCTCATAACCCCACACGGCCATCTCAAGTCCTCAAATGTCCTTCTCAAGGCCAATCACGAGCCCCTTCTTTCGGACTATGGCCTAATCCCGGTTGTGAACCAAGAACACGCCCAAGAGCTAATGGTGGCCTACAAATCCCCCGAGTACTCTCAACAAGGTCGCATCACAAAGAAGACAGATGTGTGGAGTTTTGGGCTGTTGATCTTAGAGATTCTAACAGGGAAATTCCCAGCCAACTTTTTGCATCAGAACAAGAGTAGTGACGATGAGGATTTGGCGAGTTGGGTCAGAACTATTCCTGAAAAAGAATGGAACAGCCAAGTATTGGATAAGGACATGGGGCCAACCAAGAGCAGCGACGGAGAGATTATGAAGCTTCTGAGAATTGCAATGGCATGTTGCGAGAGCGACTTTGAGAAGAGGCTGGATTTGCGAGAGGCTGTGGAGAAGATTGAGGAGTTGAAAGAAAAAGATGGGGATGAAGACTTCTATTCCTCATACGCCAGTGAAGCTGACATTAGATCTTCAAGAGGGTTATCTGATGAACTCAATTTCACCATTTGA 1947 48.48 MAGPSPPSSPATAMSVILILISMEVVFVAWSASTDGEALLKFKGSLEISNDALGSWAAGSSPCSGDKANWVGVLCEKGNVWGLKLENMGLKGNIDIESLEGVPQLRALSLMNNEFEGSLPDVKRLGALKALYLSRNRFSGNIPGDKFLSMLSLKKVHLANNQFEGQIPWSLVELPRLLELRLEGNKFSGQIPNFQQNTLKAFNVSNNDQLHGQIPRSLAQIDPSSFSGIEGLCGMPLDKPCNSTKMPSIASIIMVSIAVTAALLAIGAGIVILSRRNQSSPCQESPAHKSPSASQGPAVGSKSPDCGSSHGSSGKRAPESAKLSFVRDDLEKFDLSDLLKASAEILGSGCFGSSYKAALSNGPVMVVKRFKQMNNVDREEFQEHMRRIGRLKHANLLPLVAYYYKREEKLLITDFVEKGSLAVQLHGHKAVGQPALDWPARLKIIKGIAKGLRYLYAELPSLITPHGHLKSSNVLLKANHEPLLSDYGLIPVVNQEHAQELMVAYKSPEYSQQGRITKKTDVWSFGLLILEILTGKFPANFLHQNKSSDDEDLASWVRTIPEKEWNSQVLDKDMGPTKSSDGEIMKLLRIAMACCESDFEKRLDLREAVEKIEELKEKDGDEDFYSSYASEADIRSSRGLSDELNFTI 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2989084 2992202 + Lag0033925.1 Lac3g0397 600819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0397 648 Gene3D Phosphorylase Kinase; domain 1 307 415 - -
Lac3g0397 648 ProSiteProfiles Protein kinase domain profile. 340 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0397 648 FunFam pollen receptor-like kinase 1 309 415 - -
Lac3g0397 648 FunFam Nuclear pore complex protein NUP107 32 193 - -
Lac3g0397 648 Pfam Leucine rich repeat 128 187 IPR001611 GO:0005515(InterPro)
Lac3g0397 648 SUPERFAMILY L domain-like 33 220 - -
Lac3g0397 648 Pfam Protein tyrosine and serine/threonine kinase 344 611 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0397 648 MobiDBLite consensus disorder prediction 280 320 - -
Lac3g0397 648 FunFam Pollen receptor-like kinase 1 416 626 - -
Lac3g0397 648 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 617 IPR046959 -
Lac3g0397 648 Gene3D Ribonuclease Inhibitor 34 148 IPR032675 -
Lac3g0397 648 Gene3D Ribonuclease Inhibitor 149 242 IPR032675 -
Lac3g0397 648 Gene3D Transferase(Phosphotransferase) domain 1 416 634 - -
Lac3g0397 648 MobiDBLite consensus disorder prediction 280 315 - -
Lac3g0397 648 SUPERFAMILY Protein kinase-like (PK-like) 344 614 IPR011009 -
Lac3g0397 648 Pfam Leucine rich repeat N-terminal domain 33 75 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0700 Lac-Chr2:5273842 Lac3g0397 Lac-Chr3:2989084 2.00E-136 dispersed
Lac3g0397 Lac-Chr3:2989084 Lac6g1160 Lac-Chr6:11031548 1.80E-95 dispersed
Lac12g2559 Lac-Chr12:42530776 Lac3g0397 Lac-Chr3:2989084 3.30E-129 transposed
Lac5g2710 Lac-Chr5:45580266 Lac3g0397 Lac-Chr3:2989084 5.00E-74 transposed
Lac6g3114 Lac-Chr6:48530513 Lac3g0397 Lac-Chr3:2989084 2.40E-101 transposed
Lac10g0300 Lac-Chr10:2302278 Lac3g0397 Lac-Chr3:2989084 8.40E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86057 PF07714 PK_Tyr_Ser-Thr 1.70E-30 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0397 K28077 - csv:101213261 1053.12