Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0400 ATGGAGGATCAAAACGAGGTGCAGAGGATCTTCAAGAGGTTCGAAGAGATTGCGTCGGGGATCATCTCGGTGCCGATAGACTTTCCGGGAACCAGCTACAGGAAAGCCATTAGGGCGTCGGAGTTTGTGAGGAAGGAGCTGTCGAAGATCATAAAGCAGAGGAAGATAGATCTGGCGGAGGGGAAGGCCTCGCCGAGACAAGACATTCTGTCGCACATGCTTTTGACCAGCGACGGCAACGGCCAATTCATCCACGAAGAAGACATTGCCTCTAAGATTGTCGGTCTCCTCGTCGGCGGCCACGACACCGGCGTCTGCACCTGCACTTTCATCGTCAAGTACTTGGCTGCTCTCCCCCATGTCTACGAAAATGTCTACAATGAGCAAATGGAGATAGCAAAATCCAAGGGAGCAGGAGAGCTATTGACTTGGGAAGATCTGCAGAAGATGAAGTATTCTTGGAATGTAGCTTGTGAAGTGCTCAGGCTCTTTCCTCCTGTTCAAGGAGCTTTCAGAGTTGCCCTCACAGACTTTGTCTTTAATGGCTTCAGTATCCCCAAGGGCTGGAAGTTGTATTGGAGTGCGGCGGCAACGCACAAAAACCCGGAGTACTTTCCAGATCCGTACAAGTTCGATCCATCGAGGTTCGAAGGGAAAGGTCCAGCTCCGTTCACGTACGTGCCGTTCGGGGGCGGGCCGAGAATGTGCCCCGGCAAAGAGTATGCAAGGCTAGAGGTGCTAGTGTTTATGCACCATTTGGTCAAGCGTTTCAAAATTGAACTTTGCGAACCTGATGAAAAAGTGACTTGCAATCCAATTCCCATGCCTGTCCACGGCCTCCCCGTCCGCCTCATTCCCCATGCCTAA 867 51.79 MEDQNEVQRIFKRFEEIASGIISVPIDFPGTSYRKAIRASEFVRKELSKIIKQRKIDLAEGKASPRQDILSHMLLTSDGNGQFIHEEDIASKIVGLLVGGHDTGVCTCTFIVKYLAALPHVYENVYNEQMEIAKSKGAGELLTWEDLQKMKYSWNVACEVLRLFPPVQGAFRVALTDFVFNGFSIPKGWKLYWSAAATHKNPEYFPDPYKFDPSRFEGKGPAPFTYVPFGGGPRMCPGKEYARLEVLVFMHHLVKRFKIELCEPDEKVTCNPIPMPVHGLPVRLIPHA 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3007701 3009424 + Lag0033928.1 Lac3g0400 600822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0400 288 PRINTS E-class P450 group I signature 236 259 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g0400 288 PRINTS E-class P450 group I signature 226 236 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g0400 288 PRINTS E-class P450 group I signature 88 105 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g0400 288 PRINTS E-class P450 group I signature 194 218 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g0400 288 Pfam Cytochrome P450 28 270 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g0400 288 SUPERFAMILY Cytochrome P450 5 286 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g0400 288 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 229 238 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lac3g0400 288 Gene3D Cytochrome P450 1 286 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g0400 288 PRINTS P450 superfamily signature 227 236 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g0400 288 PRINTS P450 superfamily signature 236 247 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g0400 288 PRINTS P450 superfamily signature 155 166 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g0400 288 PRINTS P450 superfamily signature 99 116 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac3g0400 288 PANTHER CYTOCHROME P450 26 6 264 - GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1392 Lac-Chr2:11754999 Lac3g0400 Lac-Chr3:3007701 2.50E-65 dispersed
Lac3g0400 Lac-Chr3:3007701 Lac6g0318 Lac-Chr6:2614235 6.70E-50 dispersed
Lac3g0400 Lac-Chr3:3007701 Lac2g1391 Lac-Chr2:11751867 4.80E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0400 K20667 - rcu:8282886 442.195