Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac3g0420 | ATGCCGGATACACCATCGTCGCCGAAGAGCGGTGGCCGGTTGACGCTAATGGAGAATCTGCTCGGACTTCTCCGCATTCGCATCATTCGTGGTGTCAATCTTGCCGTTCGTGATGTTCGCAGTAGCGATCCTTATGTTGTCGTCAAGATGGGAAAACAAGCTGGATTGGTGGTTATTTGGTGTGACTCTGAAAATGACGCGAATGTTTGGATGGTTTTCATGGACGAAGTCTTTGAAACATGCGTCTCGAGGCTGCGACTGAGGCGCTCTCGAGGAGGACGGACGGTTCGGTTATGGCCTGCGCTAAGTTCGCCTAAATTGAAGACGCGGGTGATAAAGAAGGATGTCAATCCTGAATGGAATGAAGATCTAACTCTTTCTGTCAGTGACCCGAATCAACCAATTAAGCTGACTGTTTACGATCACGACACATTTACCAAGGATGACAAAATGGGATATGCCGAGATTGATATCAAATCATTTATGGAAGCTCTGAAGATGGACTTATCAAATCTTCCGAGTGGAACCACAATCACACGAATGCTACCGAGCAGGCAAAACTGTCTTGCTGAAGAGAGCTGTGTCGTCTGGAAAGATGGTAAAGTAATCCAAGATATCTACCTTAGATTGAAAAACGTCGAATGCGGCGAAGTCGAAATCCAGTTGCAGTGGATTGATCTTCCAAACCCCAAAGGCTAA | 699 | 46.64 | MPDTPSSPKSGGRLTLMENLLGLLRIRIIRGVNLAVRDVRSSDPYVVVKMGKQAGLVVIWCDSENDANVWMVFMDEVFETCVSRLRLRRSRGGRTVRLWPALSSPKLKTRVIKKDVNPEWNEDLTLSVSDPNQPIKLTVYDHDTFTKDDKMGYAEIDIKSFMEALKMDLSNLPSGTTITRMLPSRQNCLAEESCVVWKDGKVIQDIYLRLKNVECGEVEIQLQWIDLPNPKG | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 3189914 | 3192487 | + | Lag0033948.1 | Lac3g0420 | 600842 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac3g0420 | 232 | Gene3D | C2 domain | 18 | 231 | IPR035892 | - | |
| Lac3g0420 | 232 | ProSiteProfiles | C2 domain profile. | 8 | 171 | IPR000008 | - | |
| Lac3g0420 | 232 | Pfam | C2 domain | 22 | 53 | IPR000008 | - | |
| Lac3g0420 | 232 | Pfam | C2 domain | 103 | 162 | IPR000008 | - | |
| Lac3g0420 | 232 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 17 | 230 | IPR044562 | - | |
| Lac3g0420 | 232 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 19 | 167 | IPR035892 | - | |
| Lac3g0420 | 232 | SMART | C2_3c | 23 | 170 | IPR000008 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g0239 | Lac-Chr11:2362220 | Lac3g0420 | Lac-Chr3:3189914 | 9.40E-57 | dispersed | |
| Lac3g0420 | Lac-Chr3:3189914 | Lac8g1626 | Lac-Chr8:34247575 | 4.90E-51 | dispersed | |
| Lac10g0291 | Lac-Chr10:2220391 | Lac3g0420 | Lac-Chr3:3189914 | 4.60E-68 | wgd |
Pathway information