Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0437 ATGGAGGATGTGGGGCAAGCAAGAGTCTCGACGGCACGACGGAAGAAGATCGTCGGCACGGCGGATGTGGGTCGCCGGCGCGATGCGAGAGGTAGGGATTGGGATACACTCTGTGTTGGGGGGTGGAAAATGGTGGGAAATGGAGGATTAAGTCTTTCAAGGGGGGGCAATGGTGGGAAGGGAGGGTTGTGGAAGATGAAGATGGACGGACGGGTAGTAAATATGCAGATGGACAGGGATGTTGTTCCTGATCAATGGAGTTCAGAGGTGTTTCTCTCTACTGACGGGGTGGTTGAACTTTGTACTCATTGTCCGACAAGAGGTTCTCAATGGAGTTCAGAGGTGTTTCTCTCCACTGACGGGGTGGTTGAACTTTGTACTCATTGTCCGACAAGCCTTGATTCATCCATGTCTCGCCGCAGCGACGACGACGGCGGTGACGAGGAGCCTTCCGCCGGCGAGGAAGACGATGAAGCTGATGTGTCTGATGAGGACATGGAAGCCCTCCGGCGAGCGTGTAGGCTTGTTGGAGTCAATCCTGAGGAGTGTATTAATAATCTGTCGTCGTCAAATGCCGCCGGAGATGACTCTTTCGGCGGCAAAAAACCGGGCTCTGATTCTGATGATATTGATGATCTTGAACTTGTTCGGAATATTCGGGAACGGTTCTCGACTGCGGCCGATGAGCAGGACCAGGCTTTGTCTACGCAGCCGTTGAATACTCTCCCACCAGTGTCACCAGACGAGGAGGAAGACGAGTTCGAGACGCTCCGTCGGATTCGGCACGCTTTGCGACAGCGATCAGTTTTGGGCCTAATGGCTAGAAAACAAGTTGCTATGGGCAATGACGCTGATCACCCCACCCAAGATGCGGAAACATCTATTCTCCCCCAAACCCTTGACACTAGACTACAAGCTGTGGAAGCTTCTATCAAAGAGATGAAGGGTGCTCTTCATGAGCATTGTGAGTTTTGTGCGCATGTTGATCAAGCTAGCATATCTTTGAAAGGACGCAAATGTTTGCAAAAGATAGTTGGGAGTGTAGTAAAGGAGATCTTTGAAAGGTGTTTTGTGAGTTCTATGAGAGACGTCTTAAAGAGCTCTTTGAATGAAACATTTGTGTTCTTCATCCCCAGGGAGGAGGGAGCTAGGAGGAGAGATGATCGAAGAGTTCAAGTTCTATATCCATCATTCCTTTCGGAGAAGAGAATGGTTTTTATGGCAAATGGGGATACTTTGAGCAATAAACCCGATCAGTCTTGTGAATTTGATGGACCTCTGGAGATGGATTCTAACAACACAGTTGTTGAGAGACAGACATCCTCAGAAAGGTCATCTATGCTAGCCTTTGAAAAGGGCAGCTTGCCAAAGGCTGCGTTGGCATTTATTGATGCCATCAAGAAGAATAGGTCTCAGCAGAAGTATATTCGTAGTAAGATGATTCACCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTTCAAAATTCTCAAAGATTTCCAGGGTTCATGTAGAAGAAAAACAAGTTGTGCACTGTCTCAGATGATTGATCCTCGAGTCCAGTTAATGTCGGCTGGAAAACCACAGGCTAAGGATTCAACAAAGAAGGACAAACGATTTTCTGCAATGTATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAAAATGGCATTGACAAAGTTTCCACCTTCTGTAGATCGAAAAAAATGGACCAATGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAGCAATTTCAAGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGGGCTACAAGGATTTTCAGCAGATTCAGATGATCTAGATAACATTCTTGCATCAATAAAAGACCTTGAGATTACCCCTGAAAAGGTTAGGGAATTTTTGCCAAAAGTTAATTGGGACAAACTGGCTTCCATTTATCTTCGAAGTCGCTCAGGGGCAGAATGTGAAGCAAGGTGGTTGAATTTTGAAGACCCCCTAATTAATCGGAATCCATGGACTACAAGTGAGGACAAGAATCTTTTGTTTACCATCCAACAGAAAGGGTTGAATAACTGGATTGACATAGCAGTTTCATTGGGTACAAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACCAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATATTTGGTGTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAACTGGTACACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGCTATTTCACTCCAGATGAAGATAGTCGCTTGAAAATTGCGGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAGATGTCAATGGACAGAAGAGGAGGATTTAAGGCTAGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCGTCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCGGCCTTGGTCCTACTGACTTTCGACCTCTACCGGATACAATTTATTATAAGGATTCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAGATCAAATAACCAGAGGAATCAAGTTGATGCCACTGCTCAGCTAAATAGTAAGGAATCAGAGAGGACCAGCAGTGACTGCACTGAGACTGTTGATGAGAATGGTATGGAGTCGTGTGAGAACAAAGTTGCTGAGACGCTTTCTAAAAGAGATGTATGCTTTTCAGAGCAAGAAGAAAATCAAAACTCTACTGGATCTTCTGGAGTATCAGTATTATACAGCATTGCTGGCCAGCCTACTGGGGATGATATTATAGAAAGAAATGGGGAGAGTGTTGCAGACAAAGATCTGGATGACAGTTTCTCGTTACCGCACAGTTGCTTAGAACTCAGGGCAACTGACAGTGAAGGTGTCAACAGCTATTCTGTGGATGAAGTCACAGATAAAGGCCATGGGGTTTGCAAGTACCAAGGCAGAAGGAAGAAAAATAGTAAAACATCAAATAAGAGCCAGGATTCATTGGTTTCTTGTAACAAGTGGAGCTGGAGAGGTCGAGATGAAGGAGCTTCATTGTCATAA 3339 44.83 MEDVGQARVSTARRKKIVGTADVGRRRDARGRDWDTLCVGGWKMVGNGGLSLSRGGNGGKGGLWKMKMDGRVVNMQMDRDVVPDQWSSEVFLSTDGVVELCTHCPTRGSQWSSEVFLSTDGVVELCTHCPTSLDSSMSRRSDDDGGDEEPSAGEEDDEADVSDEDMEALRRACRLVGVNPEECINNLSSSNAAGDDSFGGKKPGSDSDDIDDLELVRNIRERFSTAADEQDQALSTQPLNTLPPVSPDEEEDEFETLRRIRHALRQRSVLGLMARKQVAMGNDADHPTQDAETSILPQTLDTRLQAVEASIKEMKGALHEHCEFCAHVDQASISLKGRKCLQKIVGSVVKEIFERCFVSSMRDVLKSSLNETFVFFIPREEGARRRDDRRVQVLYPSFLSEKRMVFMANGDTLSNKPDQSCEFDGPLEMDSNNTVVERQTSSERSSMLAFEKGSLPKAALAFIDAIKKNRSQQKYIRSKMIHLEARIEENKKLRKRFKILKDFQGSCRRKTSCALSQMIDPRVQLMSAGKPQAKDSTKKDKRFSAMYYGPAENSHVACYKMALTKFPPSVDRKKWTNVERENLGKGIRQQFQEMVLQISVDQISGLQGFSADSDDLDNILASIKDLEITPEKVREFLPKVNWDKLASIYLRSRSGAECEARWLNFEDPLINRNPWTTSEDKNLLFTIQQKGLNNWIDIAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRSAVAIFGVGDWQAVASTLEGRTGTQCSNRWKKSLDPARTKRGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCQWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALVLLTFDLYRIQFIIRIPVSRNEKSATGDAPKKRRSNNQRNQVDATAQLNSKESERTSSDCTETVDENGMESCENKVAETLSKRDVCFSEQEENQNSTGSSGVSVLYSIAGQPTGDDIIERNGESVADKDLDDSFSLPHSCLELRATDSEGVNSYSVDEVTDKGHGVCKYQGRRKKNSKTSNKSQDSLVSCNKWSWRGRDEGASLS 1112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3338555 3352075 + Lag0033965.1 Lac3g0437 600859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0437 1112 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 825 879 IPR017930 -
Lac3g0437 1112 CDD SANT 781 822 IPR001005 -
Lac3g0437 1112 Gene3D - 832 878 - -
Lac3g0437 1112 ProSiteProfiles Myb-like domain profile. 825 875 IPR001005 -
Lac3g0437 1112 Gene3D - 669 719 - -
Lac3g0437 1112 ProSiteProfiles SANT domain profile. 723 772 IPR017884 -
Lac3g0437 1112 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 151 1068 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Lac3g0437 1112 MobiDBLite consensus disorder prediction 228 243 - -
Lac3g0437 1112 MobiDBLite consensus disorder prediction 1075 1094 - -
Lac3g0437 1112 MobiDBLite consensus disorder prediction 133 166 - -
Lac3g0437 1112 Gene3D - 724 774 - -
Lac3g0437 1112 SUPERFAMILY Homeodomain-like 775 871 IPR009057 -
Lac3g0437 1112 SUPERFAMILY Homeodomain-like 649 716 IPR009057 -
Lac3g0437 1112 Pfam Myb-like DNA-binding domain 725 769 IPR001005 -
Lac3g0437 1112 Pfam Myb-like DNA-binding domain 830 874 IPR001005 -
Lac3g0437 1112 Pfam Myb-like DNA-binding domain 672 717 IPR001005 -
Lac3g0437 1112 Pfam Myb-like DNA-binding domain 778 824 IPR001005 -
Lac3g0437 1112 ProSiteProfiles Myb-like domain profile. 773 824 IPR001005 -
Lac3g0437 1112 MobiDBLite consensus disorder prediction 147 163 - -
Lac3g0437 1112 CDD SANT 833 875 IPR001005 -
Lac3g0437 1112 Gene3D - 775 829 - -
Lac3g0437 1112 MobiDBLite consensus disorder prediction 946 961 - -
Lac3g0437 1112 MobiDBLite consensus disorder prediction 225 249 - -
Lac3g0437 1112 SUPERFAMILY Homeodomain-like 704 775 IPR009057 -
Lac3g0437 1112 SMART sant 671 721 IPR001005 -
Lac3g0437 1112 SMART sant 571 668 IPR001005 -
Lac3g0437 1112 SMART sant 724 773 IPR001005 -
Lac3g0437 1112 SMART sant 829 877 IPR001005 -
Lac3g0437 1112 SMART sant 777 826 IPR001005 -
Lac3g0437 1112 ProSiteProfiles Myb-like domain profile. 667 719 IPR001005 -
Lac3g0437 1112 MobiDBLite consensus disorder prediction 187 212 - -
Lac3g0437 1112 ProSiteProfiles Myb-like domain profile. 720 771 IPR001005 -
Lac3g0437 1112 CDD SANT 727 771 IPR001005 -
Lac3g0437 1112 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 777 824 IPR017930 -
Lac3g0437 1112 MobiDBLite consensus disorder prediction 930 978 - -
Lac3g0437 1112 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 720 775 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0437 K09422 - - csv:101216287 1030.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0686 Lac-Chr13:5235577 Lac3g0437 Lac-Chr3:3338555 2.80E-14 dispersed
Lac1g3413 Lac-Chr1:53599673 Lac3g0437 Lac-Chr3:3338555 4.00E-15 dispersed
Lac3g0437 Lac-Chr3:3338555 Lac7g2535 Lac-Chr7:43434192 3.10E-284 dispersed
Lac3g0437 Lac-Chr3:3338555 Lac9g0436 Lac-Chr9:8379372 1.10E-44 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g1942 . 1 851 MYB-Related Transcription Factor Family AT1G09770 76.1 0.0e+00 1211.1
Lac3g0437 . 454 908 MYB-Related Transcription Factor Family AT3G18100 57.4 4.5e-153 539.3
Lac7g2535 . 55 422 MYB-Related Transcription Factor Family AT3G18100 60.6 2.4e-130 463.8
Lac3g0437 . 454 908 MYB-Related Transcription Factor Family AT3G18100 57.4 4.5e-153 539.3
Lac7g2535 . 55 422 MYB-Related Transcription Factor Family AT3G18100 60.6 2.4e-130 463.8
Lac3g1942 . 1 851 MYB-Related Transcription Factor Family AT1G09770 76.1 0.0e+00 1211.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23571 PF00249 Myb_DNA-binding 1.10E-08 CL0123 Lac TF