Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0437 ATGGAGGATGTGGGGCAAGCAAGAGTCTCGACGGCACGACGGAAGAAGATCGTCGGCACGGCGGATGTGGGTCGCCGGCGCGATGCGAGAGGTAGGGATTGGGATACACTCTGTGTTGGGGGGTGGAAAATGGTGGGAAATGGAGGATTAAGTCTTTCAAGGGGGGGCAATGGTGGGAAGGGAGGGTTGTGGAAGATGAAGATGGACGGACGGGTAGTAAATATGCAGATGGACAGGGATGTTGTTCCTGATCAATGGAGTTCAGAGGTGTTTCTCTCTACTGACGGGGTGGTTGAACTTTGTACTCATTGTCCGACAAGAGGTTCTCAATGGAGTTCAGAGGTGTTTCTCTCCACTGACGGGGTGGTTGAACTTTGTACTCATTGTCCGACAAGCCTTGATTCATCCATGTCTCGCCGCAGCGACGACGACGGCGGTGACGAGGAGCCTTCCGCCGGCGAGGAAGACGATGAAGCTGATGTGTCTGATGAGGACATGGAAGCCCTCCGGCGAGCGTGTAGGCTTGTTGGAGTCAATCCTGAGGAGTGTATTAATAATCTGTCGTCGTCAAATGCCGCCGGAGATGACTCTTTCGGCGGCAAAAAACCGGGCTCTGATTCTGATGATATTGATGATCTTGAACTTGTTCGGAATATTCGGGAACGGTTCTCGACTGCGGCCGATGAGCAGGACCAGGCTTTGTCTACGCAGCCGTTGAATACTCTCCCACCAGTGTCACCAGACGAGGAGGAAGACGAGTTCGAGACGCTCCGTCGGATTCGGCACGCTTTGCGACAGCGATCAGTTTTGGGCCTAATGGCTAGAAAACAAGTTGCTATGGGCAATGACGCTGATCACCCCACCCAAGATGCGGAAACATCTATTCTCCCCCAAACCCTTGACACTAGACTACAAGCTGTGGAAGCTTCTATCAAAGAGATGAAGGGTGCTCTTCATGAGCATTGTGAGTTTTGTGCGCATGTTGATCAAGCTAGCATATCTTTGAAAGGACGCAAATGTTTGCAAAAGATAGTTGGGAGTGTAGTAAAGGAGATCTTTGAAAGGTGTTTTGTGAGTTCTATGAGAGACGTCTTAAAGAGCTCTTTGAATGAAACATTTGTGTTCTTCATCCCCAGGGAGGAGGGAGCTAGGAGGAGAGATGATCGAAGAGTTCAAGTTCTATATCCATCATTCCTTTCGGAGAAGAGAATGGTTTTTATGGCAAATGGGGATACTTTGAGCAATAAACCCGATCAGTCTTGTGAATTTGATGGACCTCTGGAGATGGATTCTAACAACACAGTTGTTGAGAGACAGACATCCTCAGAAAGGTCATCTATGCTAGCCTTTGAAAAGGGCAGCTTGCCAAAGGCTGCGTTGGCATTTATTGATGCCATCAAGAAGAATAGGTCTCAGCAGAAGTATATTCGTAGTAAGATGATTCACCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTTCAAAATTCTCAAAGATTTCCAGGGTTCATGTAGAAGAAAAACAAGTTGTGCACTGTCTCAGATGATTGATCCTCGAGTCCAGTTAATGTCGGCTGGAAAACCACAGGCTAAGGATTCAACAAAGAAGGACAAACGATTTTCTGCAATGTATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAAAATGGCATTGACAAAGTTTCCACCTTCTGTAGATCGAAAAAAATGGACCAATGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAGCAATTTCAAGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGGGCTACAAGGATTTTCAGCAGATTCAGATGATCTAGATAACATTCTTGCATCAATAAAAGACCTTGAGATTACCCCTGAAAAGGTTAGGGAATTTTTGCCAAAAGTTAATTGGGACAAACTGGCTTCCATTTATCTTCGAAGTCGCTCAGGGGCAGAATGTGAAGCAAGGTGGTTGAATTTTGAAGACCCCCTAATTAATCGGAATCCATGGACTACAAGTGAGGACAAGAATCTTTTGTTTACCATCCAACAGAAAGGGTTGAATAACTGGATTGACATAGCAGTTTCATTGGGTACAAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACCAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATATTTGGTGTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAACTGGTACACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGCTATTTCACTCCAGATGAAGATAGTCGCTTGAAAATTGCGGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAGATGTCAATGGACAGAAGAGGAGGATTTAAGGCTAGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCGTCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCGGCCTTGGTCCTACTGACTTTCGACCTCTACCGGATACAATTTATTATAAGGATTCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAGATCAAATAACCAGAGGAATCAAGTTGATGCCACTGCTCAGCTAAATAGTAAGGAATCAGAGAGGACCAGCAGTGACTGCACTGAGACTGTTGATGAGAATGGTATGGAGTCGTGTGAGAACAAAGTTGCTGAGACGCTTTCTAAAAGAGATGTATGCTTTTCAGAGCAAGAAGAAAATCAAAACTCTACTGGATCTTCTGGAGTATCAGTATTATACAGCATTGCTGGCCAGCCTACTGGGGATGATATTATAGAAAGAAATGGGGAGAGTGTTGCAGACAAAGATCTGGATGACAGTTTCTCGTTACCGCACAGTTGCTTAGAACTCAGGGCAACTGACAGTGAAGGTGTCAACAGCTATTCTGTGGATGAAGTCACAGATAAAGGCCATGGGGTTTGCAAGTACCAAGGCAGAAGGAAGAAAAATAGTAAAACATCAAATAAGAGCCAGGATTCATTGGTTTCTTGTAACAAGTGGAGCTGGAGAGGTCGAGATGAAGGAGCTTCATTGTCATAA 3339 44.83 MEDVGQARVSTARRKKIVGTADVGRRRDARGRDWDTLCVGGWKMVGNGGLSLSRGGNGGKGGLWKMKMDGRVVNMQMDRDVVPDQWSSEVFLSTDGVVELCTHCPTRGSQWSSEVFLSTDGVVELCTHCPTSLDSSMSRRSDDDGGDEEPSAGEEDDEADVSDEDMEALRRACRLVGVNPEECINNLSSSNAAGDDSFGGKKPGSDSDDIDDLELVRNIRERFSTAADEQDQALSTQPLNTLPPVSPDEEEDEFETLRRIRHALRQRSVLGLMARKQVAMGNDADHPTQDAETSILPQTLDTRLQAVEASIKEMKGALHEHCEFCAHVDQASISLKGRKCLQKIVGSVVKEIFERCFVSSMRDVLKSSLNETFVFFIPREEGARRRDDRRVQVLYPSFLSEKRMVFMANGDTLSNKPDQSCEFDGPLEMDSNNTVVERQTSSERSSMLAFEKGSLPKAALAFIDAIKKNRSQQKYIRSKMIHLEARIEENKKLRKRFKILKDFQGSCRRKTSCALSQMIDPRVQLMSAGKPQAKDSTKKDKRFSAMYYGPAENSHVACYKMALTKFPPSVDRKKWTNVERENLGKGIRQQFQEMVLQISVDQISGLQGFSADSDDLDNILASIKDLEITPEKVREFLPKVNWDKLASIYLRSRSGAECEARWLNFEDPLINRNPWTTSEDKNLLFTIQQKGLNNWIDIAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRSAVAIFGVGDWQAVASTLEGRTGTQCSNRWKKSLDPARTKRGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCQWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALVLLTFDLYRIQFIIRIPVSRNEKSATGDAPKKRRSNNQRNQVDATAQLNSKESERTSSDCTETVDENGMESCENKVAETLSKRDVCFSEQEENQNSTGSSGVSVLYSIAGQPTGDDIIERNGESVADKDLDDSFSLPHSCLELRATDSEGVNSYSVDEVTDKGHGVCKYQGRRKKNSKTSNKSQDSLVSCNKWSWRGRDEGASLS 1112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3338555 3352075 + Lag0033965.1 Lac3g0437 600859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0437 1112 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 825 879 IPR017930 -
Lac3g0437 1112 CDD SANT 781 822 IPR001005 -
Lac3g0437 1112 Gene3D - 832 878 - -
Lac3g0437 1112 ProSiteProfiles Myb-like domain profile. 825 875 IPR001005 -
Lac3g0437 1112 Gene3D - 669 719 - -
Lac3g0437 1112 ProSiteProfiles SANT domain profile. 723 772 IPR017884 -
Lac3g0437 1112 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 151 1068 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Lac3g0437 1112 MobiDBLite consensus disorder prediction 228 243 - -
Lac3g0437 1112 MobiDBLite consensus disorder prediction 1075 1094 - -
Lac3g0437 1112 MobiDBLite consensus disorder prediction 133 166 - -
Lac3g0437 1112 Gene3D - 724 774 - -
Lac3g0437 1112 SUPERFAMILY Homeodomain-like 775 871 IPR009057 -
Lac3g0437 1112 SUPERFAMILY Homeodomain-like 649 716 IPR009057 -
Lac3g0437 1112 Pfam Myb-like DNA-binding domain 725 769 IPR001005 -
Lac3g0437 1112 Pfam Myb-like DNA-binding domain 830 874 IPR001005 -
Lac3g0437 1112 Pfam Myb-like DNA-binding domain 672 717 IPR001005 -
Lac3g0437 1112 Pfam Myb-like DNA-binding domain 778 824 IPR001005 -
Lac3g0437 1112 ProSiteProfiles Myb-like domain profile. 773 824 IPR001005 -
Lac3g0437 1112 MobiDBLite consensus disorder prediction 147 163 - -
Lac3g0437 1112 CDD SANT 833 875 IPR001005 -
Lac3g0437 1112 Gene3D - 775 829 - -
Lac3g0437 1112 MobiDBLite consensus disorder prediction 946 961 - -
Lac3g0437 1112 MobiDBLite consensus disorder prediction 225 249 - -
Lac3g0437 1112 SUPERFAMILY Homeodomain-like 704 775 IPR009057 -
Lac3g0437 1112 SMART sant 671 721 IPR001005 -
Lac3g0437 1112 SMART sant 571 668 IPR001005 -
Lac3g0437 1112 SMART sant 724 773 IPR001005 -
Lac3g0437 1112 SMART sant 829 877 IPR001005 -
Lac3g0437 1112 SMART sant 777 826 IPR001005 -
Lac3g0437 1112 ProSiteProfiles Myb-like domain profile. 667 719 IPR001005 -
Lac3g0437 1112 MobiDBLite consensus disorder prediction 187 212 - -
Lac3g0437 1112 ProSiteProfiles Myb-like domain profile. 720 771 IPR001005 -
Lac3g0437 1112 CDD SANT 727 771 IPR001005 -
Lac3g0437 1112 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 777 824 IPR017930 -
Lac3g0437 1112 MobiDBLite consensus disorder prediction 930 978 - -
Lac3g0437 1112 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 720 775 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0686 Lac-Chr13:5235577 Lac3g0437 Lac-Chr3:3338555 2.80E-14 dispersed
Lac1g3413 Lac-Chr1:53599673 Lac3g0437 Lac-Chr3:3338555 4.00E-15 dispersed
Lac3g0437 Lac-Chr3:3338555 Lac7g2535 Lac-Chr7:43434192 3.10E-284 dispersed
Lac3g0437 Lac-Chr3:3338555 Lac9g0436 Lac-Chr9:8379372 1.10E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23571 PF00249 Myb_DNA-binding 1.10E-08 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0437 K09422 - csv:101216287 1030.39