Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0442 ATGGCTGAGCTCGATCCATCAAAGAAAGTGGCCGATAGATATCTAAAGCGTGAGGTTCTCGGGGAGGGTACCTATGGTGTTGTATATAAGGCCATTGATACTCAGACAGGTCAGACGGTTGCGATCAAGAAAATTCGGCTTGGGAAACAAAAAGAGGGAGTAAATTTTACGGCTCTTCGAGAAATCAAGCTGCTTAAAGAGCTCAAAGATCCTAATATAATTGAGTTAATTGATGCCTTCCCTCACAAAGGAAATTTGCATCTTGTATTTGAATTTATGGAGACGGACCTTGAAGCTGTTATACGTGATCGAAACATATTTCTTTCCCCAGCTGACATAAAATCATACCTTCAGATGACGCTGAAAGGCCTTGCTTATTGCCACAAGAAATGGGTTTTACATAGGGATATGAAGCCAAATAATTTGTTGATAGGATCGAATGGGCAACTGAAACTTGCAGATTTTGGTTTGGCTCGGATATTTGGGAGTCCAGATCGTAGATTTACTCACCAGGTGTTTGCCCGATGGTACAGAGCACCTGAGCTATTGTTTGGCACTAAGCAATATGGTTCTGCAGTGGATGTTTGGGCAGCAGCTTGTATTTTTGCTGAACTACTACTTCGTCGACCTTTTCTTCAGGGTTCAAGTGACATTGATCAATTAGGGAAGATCTTTGCAGCTTTTGGAACTCCTACGCCTTCTCAGTGGCCTGATATGTTATACCTACCTGATTATGTGGAGTTCCAATATGTTCCTGCACCCCCTCTACGATCATTGTTTCCTATGGCTAGTGATGACACGCTGGATCTCCTATCGAAGATGTTTGCTTATGATCCAAAATCTAGAATTTCCATTCAGCAAGCATTGGAGCATAGGTACTTCTCATCTGCACCACTTCCCACAGATCCTAGTAAGCTTCCAAGGCCTACTTCAAAGCGTGAACCTATGAACCCTAGAGTTTCAGACTTAAATTCAAATGAGGGTCCTACTGTCCTCTCACCTCCAAGAAAGTCTAGAAGAGTAATGCCAGAGCGTGAGGCTTTTGAAGGAAATGCATATAGACCTGATAAACCTGATGACCATGTTAATGAGTTGCGAGAGGTAGCTGCTGGAAATACAAGCAAGAATGAAGCAGTGCCAATGTCGTTGGATTTTTCTATTTTTGGTGGAAAACCTCCAAATAGACCAACAATTAACAGTGCTGACAGATCACATCTTAAAAGGAAATTAGATCTTGAATTCCAGCAATAA 1251 41.97 MAELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSAVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPSQWPDMLYLPDYVEFQYVPAPPLRSLFPMASDDTLDLLSKMFAYDPKSRISIQQALEHRYFSSAPLPTDPSKLPRPTSKREPMNPRVSDLNSNEGPTVLSPPRKSRRVMPEREAFEGNAYRPDKPDDHVNELREVAAGNTSKNEAVPMSLDFSIFGGKPPNRPTINSADRSHLKRKLDLEFQQ 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3376850 3381567 + Lag0033970.1 Lac3g0442 600864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0442 416 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Lac3g0442 416 MobiDBLite consensus disorder prediction 294 341 - -
Lac3g0442 416 MobiDBLite consensus disorder prediction 386 416 - -
Lac3g0442 416 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Lac3g0442 416 FunFam Cyclin-dependent kinase D-1 5 94 - -
Lac3g0442 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0442 416 MobiDBLite consensus disorder prediction 317 332 - -
Lac3g0442 416 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Lac3g0442 416 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0442 416 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524(InterPro)
Lac3g0442 416 MobiDBLite consensus disorder prediction 401 416 - -
Lac3g0442 416 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0442 416 CDD STKc_CDK7 13 307 IPR037770 GO:0005675(InterPro)|GO:0008353(InterPro)|GO:0070985(InterPro)
Lac3g0442 416 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Lac3g0442 416 PANTHER CELL DIVISION PROTEIN KINASE 14 294 IPR050108 GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0045944(PANTHER)|GO:0070985(PANTHER)
Lac3g0442 416 SMART serkin_6 14 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0549 Lac-Chr11:5646231 Lac3g0442 Lac-Chr3:3376850 1.40E-13 dispersed
Lac3g0442 Lac-Chr3:3376850 Lac6g0737 Lac-Chr6:6251344 4.20E-69 dispersed
Lac5g0152 Lac-Chr5:1260842 Lac3g0442 Lac-Chr3:3376850 2.70E-53 transposed
Lac10g0281 Lac-Chr10:2129564 Lac3g0442 Lac-Chr3:3376850 5.10E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86060 PF00069 Pkinase 1.10E-72 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0442 K02202 - csv:101217645 808.52