Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0450 ATGACCGATAGCGCTAAATCAGTTCCCGAAGACGAGACTTTGAAGCTTGAAACCAAGTCCAAGCGCGCCGCAGATGTCGAAGATGTTGATGTGACTGCGAAGAAGTTTAAAACGGAAGCTGCTGCTGTTGTAGCCAATGAAACTGGAGACTGTACCGACAGAAAGTTGGAAGCTGTTAATGGTGATGAAGAAAATATGAGCATCAGGAGGGGAGTCCAGTTTGAAATCGAAGCGGATGCGGCTGAAGATAAAGGGTCTAGGCACACAATGGAGGATGCCTGGGTTTTGCTCTTGGATGCGAGCTTGGATTTTCCTGGGAAATTGAGATGTTCACATTTTGCTATCTACGATGGACATGGGGGTCGGTTAGCTGCCGAGTATGCTCAAAAGCATTTGCATATGAATGTTCTCTCGGCCGGGTTACCACGTGAGTTGTTGGATGTAAAAGCAACTAAGAAGGCAATACTTGATGGGTTTCGGAAAACTGATGAGTCTCTTCTTCAAGAAAGTTCTGCAGGGGGATGGCAGGATGGTGCTACTGCTGTTTGCGTTTGGGTATTAGGTCAAACAGTTTTTGTTTCTAATGTGGGTGATGCTAAAGCAGTTGTAGCCCGATCATTGACTGCTGATAAATCATCGAATAACCCTAATGGTGGAAGCTCTTTAAAGGCTATTGTTTTGACAAGGGAGCATAAGGCAATCTACCCACAGGAGAGAGTTCGTATTCAAAAGGCTGGTGGTGTTGTTGCTTCAAATGGTCGACTGCAGGGTCGTCTTGAAGTTTCTCGGGCATTCGGAGATCGCCAATTTAAAAAGTTGGGTGTTATTGCAACTCCAGACATCCATTCTTTCGAATTGACTGATAAGGAGCATTTTATCATTCTCGGATGTGATGGATTTTGGGGGGTCTTTGGACCAAGCGATGCTGTTGATTTTGTCCAGAAATTATTGAAGGAGGGCTTGCCCATAACATCAGTAAGTCGACGCCTTGTGCGGGAAGCTATTCGTGAACGGCGCTGTAAAGATAACTGGATTGTGGAATCCGCCAGCATTAGAGATGCAGGGTTTGAGGGTGTGGAAGCTGATGTGGAAACAGTGAGATACCCAGTGTTCCATTTTGTGTGCAACTTCAGTTTCAAGATTTTTAATAATGTCTTCCATTTGACAGTTGAACTAACCAGCATGGCTGAGATTGTTATGATGAATAGTTAA 1212 44.72 MTDSAKSVPEDETLKLETKSKRAADVEDVDVTAKKFKTEAAAVVANETGDCTDRKLEAVNGDEENMSIRRGVQFEIEADAAEDKGSRHTMEDAWVLLLDASLDFPGKLRCSHFAIYDGHGGRLAAEYAQKHLHMNVLSAGLPRELLDVKATKKAILDGFRKTDESLLQESSAGGWQDGATAVCVWVLGQTVFVSNVGDAKAVVARSLTADKSSNNPNGGSSLKAIVLTREHKAIYPQERVRIQKAGGVVASNGRLQGRLEVSRAFGDRQFKKLGVIATPDIHSFELTDKEHFIILGCDGFWGVFGPSDAVDFVQKLLKEGLPITSVSRRLVREAIRERRCKDNWIVESASIRDAGFEGVEADVETVRYPVFHFVCNFSFKIFNNVFHLTVELTSMAEIVMMNS 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3427757 3435668 - Lag0033978.1 Lac3g0450 600872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0450 403 Pfam Protein phosphatase 2C 82 339 IPR001932 -
Lac3g0450 403 ProSiteProfiles PPM-type phosphatase domain profile. 77 351 IPR001932 -
Lac3g0450 403 PANTHER PROTEIN PHOSPHATASE 2C 66 343 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Lac3g0450 403 CDD PP2Cc 81 343 IPR001932 -
Lac3g0450 403 SMART PP2C_4 59 346 IPR001932 -
Lac3g0450 403 Gene3D - 60 349 IPR036457 -
Lac3g0450 403 MobiDBLite consensus disorder prediction 1 23 - -
Lac3g0450 403 SUPERFAMILY PP2C-like 74 344 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0450 Lac-Chr3:3427757 Lac5g3019 Lac-Chr5:48090074 9.40E-26 dispersed
Lac3g0450 Lac-Chr3:3427757 Lac7g0812 Lac-Chr7:6494413 2.10E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0450 K17500 - csv:101216467 575.474