Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0460 ATGGCTTTCAAACTCCAAACCCTCTTCAAACCCACTCTTATTTGCTTCTTTACATTCATCTTCTCGGCCTCAGCTTCTGCAACAACTTCGCTGTACCATAAGTTCCAGGCCTGTGCGCCTAGAAACTGCGGACATGGTCCTGATATCAGTTCCCCCTTTTGGATAGAGGGTGTGCAAGAACCTTCTTGCGGACACCCAGATTTCAAAATCGAATGCAATGATCAAAACTACCCAGTTCTTGAGATTTCTGATGAGAATTACATCGTACAAGACATTATTTACCAAAACTGTTCGTCTCGGTTGGTCAGTACTGCAGCTTACGGCGATAAACATTCACAGGGTTGCAGCCATTGCGAGCAAAGCGATGTATATTGTAGTTTTGAAAACAATCAGCTTAAGTGTTATTGTAGCGATGGATCTCATTTCAAGAGCTGCAAACATGACAATAGAAGTGACATCAGAAAAAAGATTATCATTGGCACATGCACTGGTTTTGGAGGCTTGCTTCTAGCTTTACTTGTTCTTGGCATCTGCTACCGGTGGCGCCAGCTACGTCGTAGAAGATCTCACACGGTGCCGTATGTGCAACGAAGCATTCCATCGAATCCCTCTAATCCGTCGAATCCCCCTCCTGTTGAAGAACTTGAGAAGGGAGGTACCTACTTGGGCATTCACCTCTTCTCCTATAAAGAACTTGAAGAAGCCACCAACCATTTTGACCCCAACAGAGAGCTTGGAGATGGAGGTTTTGGCACAGTGTATTATGGCTCACTCAAAGATGGGCGTTCCGTTGCTGTCAAACGGTTGTTTGAAAGCAATTTTAAGAGAGTTGAGCAGTTTATGAATGAGGTGGAGATCCTTGCCCGCCTGCGCCACCGCAACCTCGTTTCGCTTTACGGTTGCACCTCACGCAATAGCCGTGAGCTGCTGCTTGTGTACGAATATGTCCCGAACGGCACGGTGGCTGATCACCTCCACGGTAAACTAGCAAAGCCTGGTAAGCTTCCATGGTCTACAAGAATGAAGATTGCTATAGAGTCTGCAAATGCCTTGGTGTATCTCCATGCTTCTGAAATCATCCACCGTGATGTCAAAACCAACAACATTCTCCTTGACAACAACTATTGTGTTAAAGTAGCCGATTTCGGGTTGTCCCGTCTCTTCCCGCTCGACGTCACACATGTTTCAACTGCTCCACAAGGCACTCCAGGCTATGTCGATCCGGAATACCATCAGTGCTACCAACTCTCTGATAAAAGCGATGTTTTCAGCTTTGGTGTGGTACTAGTTGAACTCATATCCTCAATGCCTGCTGTTGACATCACAAGGCACAGACAAGAGATCAACCTGTTCAACATGGCCATCAACAAGATCCAAAGCCACGCATTACACGAACTCGTCGACCCTTCGCTCGGTTTCGAATCAGACTACAAAATCCAAGAGATGATAACCAGCGTAGCCGAGTTGGCATTTCGATGCCTGCAAAGCATGAAAGATGAGAGGCCAACGATGATGGAAGTCCTTGACACTCTGAACATCATACAGAAACAGAACACCGATAAAGGAAACGATCGAGATGCCGACGCCAACATTTCTGCCAAGGACGACGCCGTGTTGCTGAAGAATGGCTATGGATCTTCTCCAAGTTCCCTGTCAGTATCTTGGGTTAGCAGCAGCACTTCCACAGCAACTAATGAAACCGTCAGCTCTTAA 1713 46.53 MAFKLQTLFKPTLICFFTFIFSASASATTSLYHKFQACAPRNCGHGPDISSPFWIEGVQEPSCGHPDFKIECNDQNYPVLEISDENYIVQDIIYQNCSSRLVSTAAYGDKHSQGCSHCEQSDVYCSFENNQLKCYCSDGSHFKSCKHDNRSDIRKKIIIGTCTGFGGLLLALLVLGICYRWRQLRRRRSHTVPYVQRSIPSNPSNPSNPPPVEELEKGGTYLGIHLFSYKELEEATNHFDPNRELGDGGFGTVYYGSLKDGRSVAVKRLFESNFKRVEQFMNEVEILARLRHRNLVSLYGCTSRNSRELLLVYEYVPNGTVADHLHGKLAKPGKLPWSTRMKIAIESANALVYLHASEIIHRDVKTNNILLDNNYCVKVADFGLSRLFPLDVTHVSTAPQGTPGYVDPEYHQCYQLSDKSDVFSFGVVLVELISSMPAVDITRHRQEINLFNMAINKIQSHALHELVDPSLGFESDYKIQEMITSVAELAFRCLQSMKDERPTMMEVLDTLNIIQKQNTDKGNDRDADANISAKDDAVLLKNGYGSSPSSLSVSWVSSSTSTATNETVSS 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3514863 3516960 + Lag0033988.1 Lac3g0460 600882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0460 570 FunFam Wall-associated receptor kinase-like 20 316 524 - -
Lac3g0460 570 ProSitePatterns Protein kinases ATP-binding region signature. 245 267 IPR017441 GO:0005524(InterPro)
Lac3g0460 570 Gene3D Phosphorylase Kinase; domain 1 213 315 - -
Lac3g0460 570 SUPERFAMILY Protein kinase-like (PK-like) 219 513 IPR011009 -
Lac3g0460 570 SMART serkin_6 239 514 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0460 570 MobiDBLite consensus disorder prediction 545 570 - -
Lac3g0460 570 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 212 315 - -
Lac3g0460 570 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 112 560 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Lac3g0460 570 ProSiteProfiles Protein kinase domain profile. 239 514 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0460 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 359 371 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0460 570 Pfam Protein kinase domain 242 509 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0460 570 Pfam Wall-associated receptor kinase galacturonan-binding 38 100 IPR025287 GO:0030247(InterPro)
Lac3g0460 570 Gene3D Transferase(Phosphotransferase) domain 1 316 539 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0255 Lac-Chr10:1965711 Lac3g0460 Lac-Chr3:3514863 1.60E-141 dispersed
Lac10g0260 Lac-Chr10:1982315 Lac3g0460 Lac-Chr3:3514863 1.70E-165 dispersed
Lac3g0460 Lac-Chr3:3514863 Lac4g0157 Lac-Chr4:2834852 4.80E-132 dispersed
Lac13g0261 Lac-Chr13:1873573 Lac3g0460 Lac-Chr3:3514863 4.90E-77 transposed
Lac5g1680 Lac-Chr5:34021519 Lac3g0460 Lac-Chr3:3514863 7.10E-53 transposed
Lac10g0254 Lac-Chr10:1962073 Lac3g0460 Lac-Chr3:3514863 1.00E-138 wgd
Lac13g0523 Lac-Chr13:3833473 Lac3g0460 Lac-Chr3:3514863 2.00E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86061 PF00069 Pkinase 8.40E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0460 - - - 0.0