Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0463 ATGGCGACGCCGTTGACAGGGCTACAACACCGCGACGGTGGCGGAGGAGTGGCTTTTTTGGCTAATTCTGTAAATAAAATGGATTCCGCGTCGTCTCCGTCCTCGCCGAATGATTGTTTGAGGAGCTCCGAGCCGCAGTCTCCTATTCTTATTTTCCTTTTCTTCCATAAAGCAATTCGCAATGAGCTCGACACGCTTCACCGGCTGGCCATGGCGTTCGCCACCGGCCAGAGAGCAGATATTCGGCCGCTATTTGAACGATACCATTTTTTGAGATCGATTTACAAGCACCACTCCAATGCTGAAGACGAGGTAATTTTTCCTGCACTCGATATTCGTGTGAAGAATGTGGCACAGACATATTCCCTTGAACACAAGGGTGAAAGCAATCTGTTTGATCATCTTTTCGAGCTTCTTAATTCTAATACAAGAAATGATGAAAGTTTCCCAAGGGAGTTAGCATCCTGCACTGGTGCCCTAAAGACTTCTGTGAGCCAGCACATGGCTAAGGAAGAAGAGCAGGTATTTCCCTTGCTTATAGAAAAGTTCTCCTTAGAAGAGCAGGCATCTCTCGTTTGGCAGTTCTTCTGCAGTATTCCTGTGTACATGATGGCTCAATTCCTCCCTTGGCTTTCATCATCTATTTCACCTGATGAAGCTCAGGATCTACAGAAATGTTTAATCAAGGTAGTTCCGGAGGAAAAGCTTCTCCAACAGGTCATATTTACTTGGATGGAAGCAAGAAGTTGTGACAACGTAACAACAAGTTGCTTTGATGATTCTCCAGTTGGATATCATACAGATCCTACTACTGATACATCAAATCATCAAACAGAAAATGTAAATTGTGCTTGTGAATTGACCAGCCATGGGAAAAGAAAATATTTGGAGCCAAGTTCTGATATGTCGGATTATGTGGTAACTCATCCAATCAATGAAATATTGTTTTGGCATAATGCCATCAAAAGAGAGTTGAATGACATAGCTGAGGAGGCCAGGAAGATACAACTTTCTGGGAACTTTAGTAATCTATCAACTTTTAACGAGAGGTTGCAATTCATTGCTGAAGTTTGCATTTTTCATAGTATTGCTGAGGATAAGGTAATCTTTCCGGCAGTAGATGGAGAGTTTTCTTTTCTCCAGGAACATGCTGAAGAAGAAAGTCAATTCAATGAGTTTAGGTGCCTGATTGAAAATATTCAAAGTGCAGGGGCTAGTTCTACTTCAAGAGCTGAATTTTACGTGAAGTTGTGTTCTCATGCTGATCAAATAATGGATACCATTAAGAGGCACTTCCATAATGAGGAAGTTCAGGTTCTTCCACTTGCTAGAAAGCACTTCAGTTTCAAGAGACAACGGGAACTGTTGTATCAAAGCTTGTGCATGATGCCTTTGAAACTGATTGAACGTGTCTTGCCATGGCTGGTAGGATCATTGAAAGAAGATGAAGCTAGAGATTTTCTCAAGAACATGCAGTTGGCAGCTCCAGCTAAAGATACTGCTCTGGTGACTCTCTTTTCTGGTTGGGCTTGCAAAGCCCGTAATAATGGTTTGTGCTTGTCTTCAAGAGCGGTTGGCTGTTGTGCAGTTAAAAGGCTTACTGACATTGAAGAAGACATTGTCCAATCATCTTGTTCATGTGCCCCTGCATTGATTGCAAGGGAAGGTCCAAAATCAGATCCCGAAACTAATGTTAATGTTAAGAGGCCAGCCATACGAAACGCTCCCATTCCATGCAAAAGTTGTGATGGCCGTATTTCTTCAGAGACTGTTAATGTCCAGCAACAATGTTGTAGTGATCAGTCCTGCCATGTTCCAGCTTTAGGAGTAAACAGCAAGAATCTGGGGTTGAGTTCTATCTTCACGTCCAAGTCTATGCGATCCTTATCTCCCAGCTCTTGTGCACCATCTCTCAATTCCAGCCTTTTTTCATGGGAAACGGATAGTGCCTCTTCTGATGTTGGGTCTGCAGGACGTCCCATAGATACTATTTTTAAATTTCACAAAGCTATACGCAAAGACTTGGAATATTTAGATGTTGAATCTGGAAAACTTAGTGATTGTGATGGGACATTTCTCCGGCAATTTATTGGAAGATTTCGCCTTCTATGGGGGTTATATAGAGCTCATAGTAATGCTGAAGATGATATTGTATTTCCTGCATTGGAATCCAAAGAGACATTGCATAATGTAAGTCACTCGTATACACTAGACCATAAACAGGAGGAAAAATTATTTGAGGACATTTCATGTGTTCTCTCTGAGATTTCACTCCTCCACGAAAGTCTGCATGAGGTTCCCTTGGATGAGAGTTTTTCTAGAAGTGATGTTGGCCTTGTTAATGTGGTGGGGAAGGATTGTGATAGAAAGTACCACGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACCCTGGATCAGCATATATTTAGGGAAGAACTTGAACTTTGGCCGCTGTTTGGGAAACACTTCTCCGTGGAGGAGCAAGACAAAATAGTTGGCCGTATTATTGGGACCACAGGTGCTGAAGTTCTCCAGTCAATGTTGCCATGGGTAACATCTGCACTTACACAGGATGAACAGAATACTATGATGGATACGTGGAAGCAGGCCACAAAAAACACCATGTTCAATGAATGGCTCAATGAATGTTGGAGAGGGACTGCTTCATCTACTTTAAATGATCAAACATCAGAAGCTAGTGTTGCTGAAAAAGATTCTGGGCTTATTGAGAGCTTGGATCAGAATGATCAAATGTTCAAGCCTGGTTGGAAAGATATCTTTCGCATGAACCAAAATGAACTTGAATCAGAAATCAGAAAGGTTTATCAGGATTCGACTCTTGATCCAAGGAGAAAAGCATATCTCGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCACAGCAGAAATTACCTCAAGCAAACGTAGAAGATAATTCCAATGGTGAAAATGTAGCAGGACGGATACCATCTTTTCGCTGTGCCGAGAAAAAGATATTTGGATGTGAACATTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGTGGAAAGTTATTTACTTGTCGATTCTGTCATGACAATGTCAGCGATCACTCAATGGACAGGAAAGCAACATCAGAGATGATGTGTATGAACTGTCTAACCATTCAACCAGTTGGGCCAATATGCACAACACCTTCTTGCAATGGATTGTCAATGGCAAAATACTATTGCAATATTTGCAAATTTTTTGATGATGAAAGGACTGTGTATCATTGCCCATTTTGCAACTTATGCCGTGTCGGGAAGGGCCTTGGAATTGATTTTTTCCATTGCATGATTTGCAATTGTTGCCTTGGGATAAAGCTGGAGAGCCATAAGTGCCTGGAGAAAAGTTTAGAAACGAATTGTCCCATCTGTTGTGATTTCTTATTTACATCCAGTGCAACAGTCAGACCGCTACCCTGTGGTCATTACATGCATTCAGCTTGCTTTCAGGCATACACTTGCAGCCATTATACCTGTCCTATTTGCAGCAAGTCCTTGGGAGATATGGCGGTTTATTTCGGCATGCTCGATGCCTTGTTGGCTGCTGAGGAGCTGCCAGAAGAGTACAGGGAACGTTGCCAGGACATATTGTGCAATGACTGTGAGCGGAAAGGCACATCACGGTTCCATTGGCTATATCATAAATGTGGGTTTTGTGGATCATACAACACCCGGGTAATCAAGAATGATATCACACATGCTGCCTGCCCTTCTTCCAATCAATGA 3771 42.24 MATPLTGLQHRDGGGGVAFLANSVNKMDSASSPSSPNDCLRSSEPQSPILIFLFFHKAIRNELDTLHRLAMAFATGQRADIRPLFERYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSNTRNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFFCSIPVYMMAQFLPWLSSSISPDEAQDLQKCLIKVVPEEKLLQQVIFTWMEARSCDNVTTSCFDDSPVGYHTDPTTDTSNHQTENVNCACELTSHGKRKYLEPSSDMSDYVVTHPINEILFWHNAIKRELNDIAEEARKIQLSGNFSNLSTFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFLQEHAEEESQFNEFRCLIENIQSAGASSTSRAEFYVKLCSHADQIMDTIKRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSLKEDEARDFLKNMQLAAPAKDTALVTLFSGWACKARNNGLCLSSRAVGCCAVKRLTDIEEDIVQSSCSCAPALIAREGPKSDPETNVNVKRPAIRNAPIPCKSCDGRISSETVNVQQQCCSDQSCHVPALGVNSKNLGLSSIFTSKSMRSLSPSSCAPSLNSSLFSWETDSASSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLSDCDGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSEISLLHESLHEVPLDESFSRSDVGLVNVVGKDCDRKYHELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTMMDTWKQATKNTMFNEWLNECWRGTASSTLNDQTSEASVAEKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANVEDNSNGENVAGRIPSFRCAEKKIFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQPVGPICTTPSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRERCQDILCNDCERKGTSRFHWLYHKCGFCGSYNTRVIKNDITHAACPSSNQ 1256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3536475 3546068 + Lag0033991.1 Lac3g0463 600885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0463 1256 Pfam Zinc-ribbon 1183 1240 IPR039512 -
Lac3g0463 1256 Pfam CHY zinc finger 1007 1075 IPR008913 GO:0008270(InterPro)
Lac3g0463 1256 SMART ring_2 1136 1177 IPR001841 -
Lac3g0463 1256 ProSiteProfiles Zinc finger CHY-type profile. 1000 1069 IPR008913 GO:0008270(InterPro)
Lac3g0463 1256 CDD RING-H2_Pirh2-like 1135 1178 - -
Lac3g0463 1256 CDD Hr-like 51 177 - -
Lac3g0463 1256 Gene3D nmb1532 protein domain like 46 196 - -
Lac3g0463 1256 Gene3D nmb1532 protein domain like 312 459 - -
Lac3g0463 1256 Pfam Ring finger domain 1135 1177 IPR001841 -
Lac3g0463 1256 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 695 1242 - -
Lac3g0463 1256 FunFam Zinc finger protein-related isoform 1 1131 1180 - -
Lac3g0463 1256 SUPERFAMILY Zinc hairpin stack 1073 1129 IPR037275 -
Lac3g0463 1256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1129 1180 IPR013083 -
Lac3g0463 1256 ProSiteProfiles Zinc finger RING-type profile. 1136 1178 IPR001841 -
Lac3g0463 1256 SUPERFAMILY CHY zinc finger-like 1001 1063 IPR037274 GO:0008270(InterPro)
Lac3g0463 1256 SUPERFAMILY RING/U-box 1135 1181 - -
Lac3g0463 1256 CDD Hr-like 313 441 - -
Lac3g0463 1256 ProSiteProfiles Zinc finger CTCHY-type profile. 1072 1135 IPR017921 -
Lac3g0463 1256 Gene3D nmb1532 protein domain like 655 888 - -
Lac3g0463 1256 CDD Hr-like 662 822 - -
Lac3g0463 1256 Gene3D - 1207 1248 - -
Lac3g0463 1256 Pfam Hemerythrin HHE cation binding domain 660 822 IPR012312 -
Lac3g0463 1256 Pfam Hemerythrin HHE cation binding domain 310 443 IPR012312 -
Lac3g0463 1256 Pfam Hemerythrin HHE cation binding domain 52 179 IPR012312 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0463 Lac-Chr3:3536475 Lac7g0846 Lac-Chr7:6845234 1.80E-43 dispersed
Lac3g0645 Lac-Chr3:5013219 Lac3g0463 Lac-Chr3:3536475 2.70E-228 transposed
Lac13g0519 Lac-Chr13:3799035 Lac3g0463 Lac-Chr3:3536475 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0463 K16276 - csv:101215023 2413.26