Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0471 ATGGCGGATTTCACTTCTGACTTGCACACTTTCAAGCCCTCTTTCTCCTTCCCCGATTTCATGGACCCCAATCTGGAGCTCATGGGTCACTGTTCTGCTGCAAACCCAGTTGGTTTGGACAACCCAGCTGCGAATTTCACTAACTTCTTGCCGTTTTCAAATGAGATGTTCTTCCCTCAGCAAACCCCACCTCAGTTTCCTCAAAGCTTGGGAGAAACCAGCTTCCCAATGAATTTGTCATCTCACTCTGCTTTGCATGCTCCTAATGTTCCAGCTTCTGCTGAATTATTCCATGAGATGAAGAAGAGGAAATCCATGGAGGTTTCGGAAAGCACCTCTGGGATTTCAACTCCACCAGTTTCTGAAACTGGGTTCAAGACGAAAAATAGCTCTGGGAAAGGGAAGAGATTGAAAAGCGTAGAGAAAGAAGAAGAGAAATCGACGAGAGAAGTGGTTCATGTCAGAGCTAGAAGAGGACAGGCCACTGATAGCCACAGTTTAGCGGAAAGGGTGAGAAGAGGAAAAATCAATGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGATGCTACAAGACCATGGGCATGGCAGTCATGTTGGATGAGATTATTAATTATGTCCAGTCTCTGCAGAATCAAGTGGAGTTCCTATCAATGAAACTAGCTGCAGCTAGCTCTTTCTATGACTTCAACTCCGAGGCAGATGCCATATCAAAATTACAGAGGGCAAAGGCACATGAAGCAAAAGAATTGGAAAGATTGATGAGAGAAGGATATGGAGGAGTGGCTTGTTTCCACTCAACTTTGCCTCTTTGA 816 44.73 MADFTSDLHTFKPSFSFPDFMDPNLELMGHCSAANPVGLDNPAANFTNFLPFSNEMFFPQQTPPQFPQSLGETSFPMNLSSHSALHAPNVPASAELFHEMKKRKSMEVSESTSGISTPPVSETGFKTKNSSGKGKRLKSVEKEEEKSTREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSFYDFNSEADAISKLQRAKAHEAKELERLMREGYGGVACFHSTLPL 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3582503 3583871 + Lag0033999.1 Lac3g0471 600893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0471 271 CDD bHLH_AtBPE_like 150 235 - -
Lac3g0471 271 FunFam transcription factor BEE 3-like 157 228 - -
Lac3g0471 271 Coils Coil 237 257 - -
Lac3g0471 271 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 228 IPR036638 GO:0046983(InterPro)
Lac3g0471 271 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 210 IPR011598 GO:0046983(InterPro)
Lac3g0471 271 MobiDBLite consensus disorder prediction 134 166 - -
Lac3g0471 271 MobiDBLite consensus disorder prediction 105 166 - -
Lac3g0471 271 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 100 242 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lac3g0471 271 Gene3D - 156 228 IPR036638 GO:0046983(InterPro)
Lac3g0471 271 SMART finulus 166 216 IPR011598 GO:0046983(InterPro)
Lac3g0471 271 Pfam Helix-loop-helix DNA-binding domain 164 211 IPR011598 GO:0046983(InterPro)
Lac3g0471 271 MobiDBLite consensus disorder prediction 109 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0170 Lac-Chr11:1577094 Lac3g0471 Lac-Chr3:3582503 5.90E-37 dispersed
Lac3g0471 Lac-Chr3:3582503 Lac8g2147 Lac-Chr8:39867065 4.00E-28 dispersed
Lac10g0238 Lac-Chr10:1857593 Lac3g0471 Lac-Chr3:3582503 4.20E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23573 PF00010 HLH 4.50E-05 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0471 - - - 0.0