Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0479 ATGCGTATGAGCTGTAATGGATGCCGTGTTCTTCGCAAAGGCTGTAGTGAAACCTGCTCCATCAGACCCTGTCTTCAATGGATCAAAAGCCCCCAATCCCAAGCCAACGCCACCTTCTTCCTCGCCAAATTCTACGGCCGAGCCGGCCTCGTTAACCTCATCAATGCCGGCCCCGACCATCTCCGCCCAGCTATTTTTAAATCTTTGCTATTCGAGGCCTGTGGCCGGATCGTGAACCCGATTTTCGGGTCGGCCGGATTGTTGTGGTCCGGGAGCTGGCAGCTGTGCCAGGACGCCGTCGAAGCCGTTCTGAAAGGCGCGCCGATTCTGCCGGTTTCATCCGAGACGGCGGCGTCGCACATGGGCCCTCCCTTGAAGGGCTGCGACATCCGTCACGTGTCCAAGCAGCAAGGCTCCGCTGCCGGTTCAGCGCTCCGGAAGATCAAGACGAGGCGGCGGTTCAAGCGCTCGGCGGCGGCGGCGAACAAGTCCAAGCCGAAGGAGGAGCCGGTGGCGGTAACCGAGTTCGTATTCGACGACCCGACCCGGGTTGTGTCGGAGCCCCGGTGTTTGAAGTTCGAGTTGGATAATTGGGTGGGCCATGAGTCGCCGGAGAAGGACTGCGGCAGCGACGACGCCGAGTGCTTATCGGTGGAGACTGTGGAGGCTTCTTCGGTGGGCCAGGGTGGTGACGTGGAATTGGAACTTACCTTGGGGTTTGGGCACAGTCAGATGCTGAGGTGA 744 60.08 MRMSCNGCRVLRKGCSETCSIRPCLQWIKSPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLKGAPILPVSSETAASHMGPPLKGCDIRHVSKQQGSAAGSALRKIKTRRRFKRSAAAANKSKPKEEPVAVTEFVFDDPTRVVSEPRCLKFELDNWVGHESPEKDCGSDDAECLSVETVEASSVGQGGDVELELTLGFGHSQMLR 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3652801 3653637 + Lag0034007.1 Lac3g0479 600901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0479 247 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 240 - GO:0010468(PANTHER)
Lac3g0479 247 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Lac3g0479 247 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2647 Lac-Chr1:47799439 Lac3g0479 Lac-Chr3:3652801 2.30E-40 dispersed
Lac2g0382 Lac-Chr2:2820811 Lac3g0479 Lac-Chr3:3652801 2.80E-31 dispersed
Lac11g0176 Lac-Chr11:1645405 Lac3g0479 Lac-Chr3:3652801 2.50E-67 transposed
Lac13g0499 Lac-Chr13:3647499 Lac3g0479 Lac-Chr3:3652801 1.90E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23575 PF03195 LOB 6.30E-22 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0479 - - - 0.0