Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0506 ATGGAGCCGATGGACATAGTTGGAAAGTCGAAAGAGGACGCCTCGCTTCCTAAGGCGACTATGACTAAAATTATTAAAGAGATGTTACCCCCTGATGTACGTGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGCTGTGTAGAGTTTATAAACCTTGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTCGAGGTACTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGCAAGACTCCTTGAAAGGTGGAAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAAGCACGTGCAAGAATGAATGGCAGTAACACTGCTCCGAAGCAACCGGAGCCCGAGCAAAGTTTAGAGAGCTAA 471 44.16 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3883741 3886705 - Lag0034034.1 Lac3g0506 600928

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0506 156 PANTHER PROTEIN DR1 HOMOLOG 1 154 IPR044255 -
Lac3g0506 156 SUPERFAMILY Histone-fold 12 142 IPR009072 GO:0046982(InterPro)
Lac3g0506 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Lac3g0506 156 MobiDBLite consensus disorder prediction 140 156 - -
Lac3g0506 156 FunFam Negative cofactor 2 beta 6 143 - -
Lac3g0506 156 Gene3D Histone, subunit A 4 145 IPR009072 GO:0046982(InterPro)
Lac3g0506 156 MobiDBLite consensus disorder prediction 134 156 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0506 K21751 - - csv:101214627 303.138
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0506 Lac-Chr3:3883741 Lac4g2401 Lac-Chr4:43556351 6.70E-12 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g0506 . 1 149 CCAAT-DR1 Transcription Factor Family AT5G08190 84.6 1.8e-63 239.6
Lac3g0506 . 1 151 CCAAT-DR1 Transcription Factor Family AT5G23090 83.4 1.3e-66 250.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004258 4 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 0 3 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23579 PF00808 CBFD_NFYB_HMF 2.70E-22 CL0012 Lac TF