Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac3g0537 | ATGCAAGATATTCACTCGATCGCCGGAGGAAGCCGCCTGTTCGGCGGCGGCGGCGGCGGCGGAGACCGTCGCCTCAGGCCCCACCTCCACCACCATCAGAACCACCAAGCTTTAAAGTGCCCGAGGTGTGATTCTCTCAATACCAAGTTCTGTTATTACAATAACTATAATCTCTCTCAGCCACGTCACTTCTGCAAGAGCTGCCGACGATACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGAGGCGGCTGCCGGAAAACCAAACGCTCCTCCTCCTCCTCCTCCAAGTCCAAGTCCTCCTCCGACGCGGCGGCGGCGGCGACTCCACCTCCTCCGCCGCCTCCTCCTCTCCGCGAACGCAAATCCACCTCTCATTCCAGCAGCGAGAGCTCCAGCCTAACCGCGACGACGACGACCGCCGCGGCGGCGGCTACCGAGGCGGTCTCGGCTCCGTCGTCGAATTCGGCGTCGACTCTATTGAGCGTACAGGAGTCGAAGTTGTTCCCGGCTCCGAGTACGAACCCTAGCTTCGAGACGGCGGCGGTGTCGGAGTGCGGAATTTTCTCGGAAATCGGAAGCTTCACGAGCTTGATCACGTCGTCGAACGAGACATTGGCGTTCGGATTCGGGAACATGGCGGCGGACGTGACGACGCCGTTCGCGATGAATCATCCGTTTCAAAATCAATCGGCGAATCAATGGGCGCCACAGAGAATGATGAACGTTAACGACGAACTGAAGATGCAGGAGATCGCCGGCAGCGGCGGAGGGTTCATGGATCAGACGGCTCACGTCGATCCATCAGGGCTGCAGAATGGCAGATCAAGCAACATTGGATTCGGACCGTTGGATTGGCAATCAAACGGCGATCATCAGGTTCTGTTTGATCTTCCCAACGCCGTTGATCAAGCATACTGGAGTCAAAATCAATGGACCGATCAAGACCACCCTAATCTGTACCTTCCGTAA | 978 | 57.98 | MQDIHSIAGGSRLFGGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSSSKSKSSSDAAAAATPPPPPPPPLRERKSTSHSSSESSSLTATTTTAAAAATEAVSAPSSNSASTLLSVQESKLFPAPSTNPSFETAAVSECGIFSEIGSFTSLITSSNETLAFGFGNMAADVTTPFAMNHPFQNQSANQWAPQRMMNVNDELKMQEIAGSGGGFMDQTAHVDPSGLQNGRSSNIGFGPLDWQSNGDHQVLFDLPNAVDQAYWSQNQWTDQDHPNLYLP | 325 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4112430 | 4113407 | + | Lag0034065.1 | Lac3g0537 | 600959 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac3g0537 | 325 | MobiDBLite | consensus disorder prediction | 129 | 157 | - | - | |
Lac3g0537 | 325 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 30 | 222 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac3g0537 | 325 | ProSitePatterns | Zinc finger Dof-type signature. | 40 | 76 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lac3g0537 | 325 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Lac3g0537 | 325 | ProSiteProfiles | Zinc finger Dof-type profile. | 38 | 92 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lac3g0537 | 325 | MobiDBLite | consensus disorder prediction | 82 | 157 | - | - | |
Lac3g0537 | 325 | Pfam | Dof domain, zinc finger | 36 | 92 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lac3g0537 | 325 | MobiDBLite | consensus disorder prediction | 89 | 107 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac3g0537 | Lac-Chr3:4112430 | Lac7g2513 | Lac-Chr7:43121708 | 2.10E-28 | dispersed | |
Lac12g2422 | Lac-Chr12:41288868 | Lac3g0537 | Lac-Chr3:4112430 | 1.20E-24 | transposed | |
Lac10g0189 | Lac-Chr10:1448443 | Lac3g0537 | Lac-Chr3:4112430 | 2.70E-26 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23582 | PF02701 | zf-Dof | 4.40E-33 | No_clan | Lac | TF |
Pathway information
