Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0537 ATGCAAGATATTCACTCGATCGCCGGAGGAAGCCGCCTGTTCGGCGGCGGCGGCGGCGGCGGAGACCGTCGCCTCAGGCCCCACCTCCACCACCATCAGAACCACCAAGCTTTAAAGTGCCCGAGGTGTGATTCTCTCAATACCAAGTTCTGTTATTACAATAACTATAATCTCTCTCAGCCACGTCACTTCTGCAAGAGCTGCCGACGATACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGAGGCGGCTGCCGGAAAACCAAACGCTCCTCCTCCTCCTCCTCCAAGTCCAAGTCCTCCTCCGACGCGGCGGCGGCGGCGACTCCACCTCCTCCGCCGCCTCCTCCTCTCCGCGAACGCAAATCCACCTCTCATTCCAGCAGCGAGAGCTCCAGCCTAACCGCGACGACGACGACCGCCGCGGCGGCGGCTACCGAGGCGGTCTCGGCTCCGTCGTCGAATTCGGCGTCGACTCTATTGAGCGTACAGGAGTCGAAGTTGTTCCCGGCTCCGAGTACGAACCCTAGCTTCGAGACGGCGGCGGTGTCGGAGTGCGGAATTTTCTCGGAAATCGGAAGCTTCACGAGCTTGATCACGTCGTCGAACGAGACATTGGCGTTCGGATTCGGGAACATGGCGGCGGACGTGACGACGCCGTTCGCGATGAATCATCCGTTTCAAAATCAATCGGCGAATCAATGGGCGCCACAGAGAATGATGAACGTTAACGACGAACTGAAGATGCAGGAGATCGCCGGCAGCGGCGGAGGGTTCATGGATCAGACGGCTCACGTCGATCCATCAGGGCTGCAGAATGGCAGATCAAGCAACATTGGATTCGGACCGTTGGATTGGCAATCAAACGGCGATCATCAGGTTCTGTTTGATCTTCCCAACGCCGTTGATCAAGCATACTGGAGTCAAAATCAATGGACCGATCAAGACCACCCTAATCTGTACCTTCCGTAA 978 57.98 MQDIHSIAGGSRLFGGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSSSKSKSSSDAAAAATPPPPPPPPLRERKSTSHSSSESSSLTATTTTAAAAATEAVSAPSSNSASTLLSVQESKLFPAPSTNPSFETAAVSECGIFSEIGSFTSLITSSNETLAFGFGNMAADVTTPFAMNHPFQNQSANQWAPQRMMNVNDELKMQEIAGSGGGFMDQTAHVDPSGLQNGRSSNIGFGPLDWQSNGDHQVLFDLPNAVDQAYWSQNQWTDQDHPNLYLP 325
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 4112430 4113407 + Lag0034065.1 Lac3g0537 600959
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0537 325 MobiDBLite consensus disorder prediction 129 157 - -
Lac3g0537 325 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 222 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0537 325 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac3g0537 325 MobiDBLite consensus disorder prediction 1 27 - -
Lac3g0537 325 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac3g0537 325 MobiDBLite consensus disorder prediction 82 157 - -
Lac3g0537 325 Pfam Dof domain, zinc finger 36 92 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac3g0537 325 MobiDBLite consensus disorder prediction 89 107 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0537 Lac-Chr3:4112430 Lac7g2513 Lac-Chr7:43121708 2.10E-28 dispersed
Lac12g2422 Lac-Chr12:41288868 Lac3g0537 Lac-Chr3:4112430 1.20E-24 transposed
Lac10g0189 Lac-Chr10:1448443 Lac3g0537 Lac-Chr3:4112430 2.70E-26 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23582 PF02701 zf-Dof 4.40E-33 No_clan Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0537 - - - 0.0