Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0537 ATGCAAGATATTCACTCGATCGCCGGAGGAAGCCGCCTGTTCGGCGGCGGCGGCGGCGGCGGAGACCGTCGCCTCAGGCCCCACCTCCACCACCATCAGAACCACCAAGCTTTAAAGTGCCCGAGGTGTGATTCTCTCAATACCAAGTTCTGTTATTACAATAACTATAATCTCTCTCAGCCACGTCACTTCTGCAAGAGCTGCCGACGATACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGAGGCGGCTGCCGGAAAACCAAACGCTCCTCCTCCTCCTCCTCCAAGTCCAAGTCCTCCTCCGACGCGGCGGCGGCGGCGACTCCACCTCCTCCGCCGCCTCCTCCTCTCCGCGAACGCAAATCCACCTCTCATTCCAGCAGCGAGAGCTCCAGCCTAACCGCGACGACGACGACCGCCGCGGCGGCGGCTACCGAGGCGGTCTCGGCTCCGTCGTCGAATTCGGCGTCGACTCTATTGAGCGTACAGGAGTCGAAGTTGTTCCCGGCTCCGAGTACGAACCCTAGCTTCGAGACGGCGGCGGTGTCGGAGTGCGGAATTTTCTCGGAAATCGGAAGCTTCACGAGCTTGATCACGTCGTCGAACGAGACATTGGCGTTCGGATTCGGGAACATGGCGGCGGACGTGACGACGCCGTTCGCGATGAATCATCCGTTTCAAAATCAATCGGCGAATCAATGGGCGCCACAGAGAATGATGAACGTTAACGACGAACTGAAGATGCAGGAGATCGCCGGCAGCGGCGGAGGGTTCATGGATCAGACGGCTCACGTCGATCCATCAGGGCTGCAGAATGGCAGATCAAGCAACATTGGATTCGGACCGTTGGATTGGCAATCAAACGGCGATCATCAGGTTCTGTTTGATCTTCCCAACGCCGTTGATCAAGCATACTGGAGTCAAAATCAATGGACCGATCAAGACCACCCTAATCTGTACCTTCCGTAA 978 57.98 MQDIHSIAGGSRLFGGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSSSKSKSSSDAAAAATPPPPPPPPLRERKSTSHSSSESSSLTATTTTAAAAATEAVSAPSSNSASTLLSVQESKLFPAPSTNPSFETAAVSECGIFSEIGSFTSLITSSNETLAFGFGNMAADVTTPFAMNHPFQNQSANQWAPQRMMNVNDELKMQEIAGSGGGFMDQTAHVDPSGLQNGRSSNIGFGPLDWQSNGDHQVLFDLPNAVDQAYWSQNQWTDQDHPNLYLP 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4112430 4113407 + Lag0034065.1 Lac3g0537 600959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0537 325 MobiDBLite consensus disorder prediction 129 157 - -
Lac3g0537 325 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 222 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0537 325 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac3g0537 325 MobiDBLite consensus disorder prediction 1 27 - -
Lac3g0537 325 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac3g0537 325 MobiDBLite consensus disorder prediction 82 157 - -
Lac3g0537 325 Pfam Dof domain, zinc finger 36 92 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac3g0537 325 MobiDBLite consensus disorder prediction 89 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0537 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0537 Lac-Chr3:4112430 Lac7g2513 Lac-Chr7:43121708 2.10E-28 dispersed
Lac12g2422 Lac-Chr12:41288868 Lac3g0537 Lac-Chr3:4112430 1.20E-24 transposed
Lac10g0189 Lac-Chr10:1448443 Lac3g0537 Lac-Chr3:4112430 2.70E-26 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g0947 . 15 170 C2C2-Dof Transcription Factor Family AT1G29160 52.5 1.6e-41 166.8
Lac10g0947 . 15 170 C2C2-Dof Transcription Factor Family AT2G34140 50.9 1.1e-39 160.6
Lac8g2507 . 1 136 C2C2-Dof Transcription Factor Family AT2G37590 66.7 6.8e-38 155.6
Lac7g2704 . 67 141 C2C2-Dof Transcription Factor Family AT2G37590 90.7 4.4e-37 152.9
Lac3g0612 . 115 466 C2C2-Dof Transcription Factor Family AT3G47500 53.1 2.2e-87 320.5
Lac8g0724 . 149 514 C2C2-Dof Transcription Factor Family AT3G47500 50.3 5.0e-76 282.7
Lac1g2524 . 1 149 C2C2-Dof Transcription Factor Family AT5G66940 56.3 2.7e-38 156.4
Lac7g2704 . 66 141 C2C2-Dof Transcription Factor Family AT5G02460 90.8 2.8e-38 157.1
Lac1g2032 . 53 126 C2C2-Dof Transcription Factor Family AT5G02460 87.8 9.0e-37 152.1
Lac10g3099 . 52 134 C2C2-Dof Transcription Factor Family AT3G55370 81.9 2.9e-37 153.7
Lac3g0537 . 29 325 C2C2-Dof Transcription Factor Family AT5G60850 52.9 2.4e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004522 2 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23582 PF02701 zf-Dof 4.40E-33 No_clan Lac TF