Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0547 ATGTCCAGACCTCTGAAAAGTCTCCCACCACCTTTTGCATCATTCCTCTCTAAAGCTTTGCTTCAAGATGCAGAAATACTGAAAGAGATAAATGAAGGATTTAAGAGCTGGTTGAAGCTTTTGATCCCTGCAAAACTTCAAGCCATGGAAGTTAATACCTACAGTGATCTATTACACAGAATTCTCTTTCAAAGGGAATGCTACTCGGCTCGACAGCAAAGAATTGTACTCTTGGCACTTCTGGTCTTTACAGCTTTCCATTCGACCGGGGCTTATGACCCATTGGATCCAAATGGAAACATAACAATCAAATGGGATGTAGTCTCTTGGACGGCAGATGGATATGTTGCTGCAGTGACAATGAACAATTTTCAGATGTACCGCCATATCAATGCACCAGGATGGACTCTAGGCTGGTCATGGGCCAAGAAAGAAGTAATATGGTCTATGGTGGGAGCTCAGACGACAGAGCAAGGAGATTGTTCCAAGTTTAAAGGAAATGTGCCTCACTGTTGCAAGAAAACCCCAATAGTTGTCGATTTGCTCCCCGGTGTTCCTTACAACCAGCAATTCTCCAATTGCTGCAAGGGTGGAGTGTTGGCATCTTGGGGACAGGATCCAGTAGGTTCAGTCTCCGCCTTTCAGGTGAGTGTTGGGCTAGCTGGAACTTCAAACAAAACTGTAAAGTTGCCGAAGAACTTCACTCTGCTCGGTCCAGGACCAGGCTACACATGTGGACCTGCAAAGATTGTGCCTTCTACAGTCTTCCTCACTCCTGATCGCCGGCGGAAAACTCAAGCACTGATGACATGGAATGTAACCTGCACTTACTCACAATTTCTGGCTTCTAAGAACCCAACTTGCTGCGTATCACTCTCGACTTTCTACAATGATACGATCACGTCTTGCCCAACCTGTGCATGTGGCTGCCAGAACAAACATAATTGTATAAAGAGTGACTCAAAGCTATTGCACAAGGATGGAATAAATACTCCTAAAAAGGATAATACACCTTTACTACAATGCACCCATCACATGTGTCCTATTCGAGTACACTGGCACGTAAAGATTAATTACAAGGATTACTGGCGTGTGAAGGTTGCTGTAACTAACTTCAACTATAGGATGAACTATACGCTGTGGACACTGGCAGTGCAGCATCCAAATCTGAACAATGTAACTCAAGTCTTCAGTTTTGACTACAAGCCCCTTGTTCCCTATGAATCCATCAATGATACTGGCATGTTCTACGGCATGAAGTTCTACAATGATCTCTTAATGGAAGCAGGGCCATTTGGAAATGTGCAATCTGAAGTACTAATGAAGAAGGACAGGGATACTTTTACCTTCAAGCAGGGTTGGGCATTTCCAAGGAAAGTATACTTCAACGGCGACGAATGTCAGATGCCACCGCCAGAATCATACCCATATCTACCCAACTCTGCTCCTGAAGGATCCAGTGCAGTTACCAAATTGACCACCACCTTGCTTTTGATAATCTGGTTTTTGTGGTGA 1515 44.22 MSRPLKSLPPPFASFLSKALLQDAEILKEINEGFKSWLKLLIPAKLQAMEVNTYSDLLHRILFQRECYSARQQRIVLLALLVFTAFHSTGAYDPLDPNGNITIKWDVVSWTADGYVAAVTMNNFQMYRHINAPGWTLGWSWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKTPIVVDLLPGVPYNQQFSNCCKGGVLASWGQDPVGSVSAFQVSVGLAGTSNKTVKLPKNFTLLGPGPGYTCGPAKIVPSTVFLTPDRRRKTQALMTWNVTCTYSQFLASKNPTCCVSLSTFYNDTITSCPTCACGCQNKHNCIKSDSKLLHKDGINTPKKDNTPLLQCTHHMCPIRVHWHVKINYKDYWRVKVAVTNFNYRMNYTLWTLAVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLMKKDRDTFTFKQGWAFPRKVYFNGDECQMPPPESYPYLPNSAPEGSSAVTKLTTTLLLIIWFLW 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4181393 4184086 + Lag0034075.1 Lac3g0547 600969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0547 504 PANTHER PROTEIN COBRA 78 498 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Lac3g0547 504 PIRSF COBRA 64 504 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lac3g0547 504 Pfam COBRA-like protein 115 278 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0547 Lac-Chr3:4181393 Lac4g0341 Lac-Chr4:7891089 1.20E-219 dispersed
Lac3g0547 Lac-Chr3:4181393 Lac3g0548 Lac-Chr3:4184739 2.10E-187 tandem
Lac2g1368 Lac-Chr2:11544127 Lac3g0547 Lac-Chr3:4181393 5.00E-36 transposed
Lac4g0330 Lac-Chr4:7562297 Lac3g0547 Lac-Chr3:4181393 1.10E-46 transposed
Lac4g1354 Lac-Chr4:31724713 Lac3g0547 Lac-Chr3:4181393 8.50E-41 transposed
Lac5g2477 Lac-Chr5:43344014 Lac3g0547 Lac-Chr3:4181393 4.60E-133 transposed
Lac8g2760 Lac-Chr8:44907949 Lac3g0547 Lac-Chr3:4181393 2.80E-167 transposed
Lac10g0179 Lac-Chr10:1366290 Lac3g0547 Lac-Chr3:4181393 1.80E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0547 - - - 0.0