Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0548 ATGAGCTCTCGGCGCTTCGCTTCCACTGGATCCGTCGCCGAACTTACCGGCTTTGCCGTCGTGCTTCTCTTTCTACTTTCCAGCTTCAGTTTCACTTCAACAGAAGCCTATGATGCACTTGATCCCAACGGGAACATCACAATCAAATGGGATGTAATGAGCTGGACTCCGGATGGCTATGTTGCTGTTGTTACCATGTACAACTTCCAGCAATACCGCCATATTCAAGCTCCAGGTTGGACATTGGGGTGGACATGGGCAAAGAAAGAAGTAATTTGGAGCATGATGGGAGGCCAAACAACAGAACAGGGTGACTGTTCAAGATTCAAAGGAAATACTCCACATTGCTGCAAGAAAGATCCAACCGTTGTGGATTTATTGCCAGGAACTCCTTACAATCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTGATAAATTCCTGGGCCCAAGACCCAGCCAATGCAGCTAGTTCATTTCAAGTCAGTGTTGGTGCTGCAGGAACAAGTAACAAAACTGTCAGACTCCCCAAAAACTTCACTCTTAAAGCGCCAGGACCTGGATACACTTGTGGTCCGGCAAAGATTGTGAAGCCAACCAAATTTATGTCTGGAGATAAAAGAAGAATAACTCAAGCTTTGATGACTTGGAATGTTACATGCACCTATTCTCAATTCCTTGCTCAGAAGACACCCACTTGTTGTGTTTCCCTCTCCTCCTTCTACAATGATACCATCGTCAACTGCCCAACCTGCACTTGTGGATGTCAAAACAACACGGCGGGTCCTGGGAGCTGTGTGGATCCAGATACTCCACATTTAGCTTCAGTAGTATCAACTCCTGATAAATCGGGCAACGTTGAACCCCTGGTTCAGTGTACTAGCCACATGTGTCCCATTCGAGTCCATTGGCATGTGAAGCTGAATTACAAGGAGTACTGGAGGGTGAAGATCACAATCACCAATTTCAATTACAGAATGAACTACACACTCTGGAATCTCGTGGTGCAGCATCCCAATTTTGATAATGTAACTCAATTATTCAGCTTTAACTATAAGTCGTTGAGCCCATATGGTGACCTAAATGATACTGCCATGCTATGGGGATTTAAGTTCTACAATGATCTGCTCAATCAAGCTGGCCCTCTTGGTAATGTGCAGTCTGAGCTCCTATTCCGGAAAGACCAGAACACTTTCACTTTTGACAAGGGTTGGGCTTTTCCAAGAAGAGTTTATTTCAATGGTGACAACTGTGTGATGCCACCTCCAGATGCCTATCCCTATTTGCCAAATGCTAGTTCCCGACCAGCTATATCTCTACTCATGACAATCTTAATATCTTTGGCATTATTGTTCAATTTTGCACTATAA 1368 44.52 MSSRRFASTGSVAELTGFAVVLLFLLSSFSFTSTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSRFKGNTPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPANAASSFQVSVGAAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVKPTKFMSGDKRRITQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNTAGPGSCVDPDTPHLASVVSTPDKSGNVEPLVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYRMNYTLWNLVVQHPNFDNVTQLFSFNYKSLSPYGDLNDTAMLWGFKFYNDLLNQAGPLGNVQSELLFRKDQNTFTFDKGWAFPRRVYFNGDNCVMPPPDAYPYLPNASSRPAISLLMTILISLALLFNFAL 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4184739 4187550 - Lag0034076.1 Lac3g0548 600970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0548 455 PIRSF COBRA 9 455 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lac3g0548 455 PANTHER PROTEIN COBRA 24 447 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Lac3g0548 455 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0548 Lac-Chr3:4184739 Lac8g2760 Lac-Chr8:44907949 1.00E-198 dispersed
Lac3g0547 Lac-Chr3:4181393 Lac3g0548 Lac-Chr3:4184739 2.10E-187 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0548 - - - 0.0