Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac3g0557 | ATGGCGAACACACCAACCACCGGTGGGATTTCAAAGATTTTGGCGAATCCATCCCCGGATTCTCCCTCCGATGTCCCCGAGGTCGTGCTTCAGGTCCTCGATCTCAAGGCGACGGGAAATCGCTACATGTTTACTGCTAGCGATGGGGATATGAAGCTAAAGGCTATTCTTCCATCAAATCTGACGTCTGAGGTTATATCTGGAAACATTCAAAATTTGGGTCTTATTCGCGTTCTTGATTATTCTCTCAATGACATCCCGAACAAGCCAGAAAAGTATCTAATCGTGACGAAATGTGAGGTGGTATCTACTGCTCTAGAAAAGGAGGTAAAAATCGAGGTTAAGAAAGAGGAAGCAGATATTGTTTTGAAACCAAAACAAGAGTTCGATGACAAGAGCACATTTAATAATGGATCTGGTATTCTTTTAAAACCAAAGCAAGAATTGGTTGCCAAATCAGCTGCTCAGATTGTACACGAGCAGCGTACAAATATGGCACCAGCTGCACGGATGTCCATGACAAGGCGAGTTCATCCCCTTGTCTACTTAAATCCTTACCAGGGAGATTGGACCATCAAAGTCCGTGTTACAGACAAGGGAAACCTACGTACATACAAGAATGCTCAAGGAGAAGGTTGTGTTTTCAATGTGGTGTTGACAGATGAAGATGGTACACAAATACAAGCAACGATGTTCAATGACGCTGCAAGGAAGTTCTATGAAAAGTTTGCCCTCGGCAAAGTTTACTACATTTCCAGGGGGACTTTGAAAGTTGCTAATAAGAAGTTTAAGACAGTTGAAAATGATTATGAAATGACTTTAAATGTGAACTCTCAAGTAGACGAGGTCAGCAATGAAGCAGCTTTCGTTCCTGAAACAAAATTTAATTTTGTCAAGATTGATATGTTAGGTCCTCACGTGAATGGAAGGGATCTTGTTGATGTTATTGGAGTTGTTCAAAGCGTTTCTCCAACGATGAGCATTCGAAGGAAAATCAACAATGAGACAGCTCCAAAACGTGATGTAACTATTGCTGATGAGACGAAGAAGACAGTTGTGATATCTTTGTGGAATGATCTTGCGACTAGTGTGGGGCAGGAGTTGCTTGACATTGCCGATCAATCTCCTATAATTGCAGTGAAGTATCTTAGAGTTGGAGATTTTCAAGGTGTATCTTTGTCTACAATAAGTAGAAGCTCAATTTTAATAAATCCAGACATAAAGGAAGCACATCATTTGAGATCCTGGTACGACTCTGAAGGAAAAGCCATATCCATGGCTTCTGTAAGCTCTGGTCTGAGCCCATCATCCAAGAGCGGGTCGAGGTCCATGTACTCTGACCGGATCTCCCTCTCTCATATACTCCAAAACAAATCTTTGGGAGAAGAAAAGCCCATGTTCTTCAGCATCAGAGCATATGTCAGCTTTATTAAGCCTGATCAAACAATGTGGTATCGGGCTTGTAAAACATGTAACAAGAAGGTGACTGAAGCCATTGGATCTGGATACTGGTGCGAAGGTTGCCAGAAGAATGACGAAGAATGCAGTTTAAGGTACATAATGGTTGTGAGAGTTTCTGATGCAAGTGGCGAAGCTTGGTTCTCTACATTCAATGAAGAAGCAGAGAGGATTATTGGATGCTCTGCTGATGAGCTTGACCAGCTCAAATCACAGATTGGAGAGGAGAATTCATATCAACTGAAACTCAAAGAAGCCACCTGGGTTCCCCATTTATTTCGAGTTAGTGTTTCTCAGAATGAATACAACAATGAGAAGAGACAAAGGATCACTGTCAGGTCCGTTGCTCCAGTTGACTTTGCTGCTGAATCTAGATTTTTGCTAGAAGAGATAGCCAAGATGAAAGCTTCCTAG | 1872 | 41.99 | MANTPTTGGISKILANPSPDSPSDVPEVVLQVLDLKATGNRYMFTASDGDMKLKAILPSNLTSEVISGNIQNLGLIRVLDYSLNDIPNKPEKYLIVTKCEVVSTALEKEVKIEVKKEEADIVLKPKQEFDDKSTFNNGSGILLKPKQELVAKSAAQIVHEQRTNMAPAARMSMTRRVHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNDAARKFYEKFALGKVYYISRGTLKVANKKFKTVENDYEMTLNVNSQVDEVSNEAAFVPETKFNFVKIDMLGPHVNGRDLVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVISLWNDLATSVGQELLDIADQSPIIAVKYLRVGDFQGVSLSTISRSSILINPDIKEAHHLRSWYDSEGKAISMASVSSGLSPSSKSGSRSMYSDRISLSHILQNKSLGEEKPMFFSIRAYVSFIKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDEECSLRYIMVVRVSDASGEAWFSTFNEEAERIIGCSADELDQLKSQIGEENSYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMKAS | 623 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 4267892 | 4271000 | - | Lag0034085.1 | Lac3g0557 | 600979 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac3g0557 | 623 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 178 | 597 | IPR004591 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER) | |
| Lac3g0557 | 623 | CDD | RPA1_DBD_A | 179 | 282 | - | - | |
| Lac3g0557 | 623 | Pfam | Replication factor-A protein 1, N-terminal domain | 6 | 103 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Lac3g0557 | 623 | Pfam | OB-fold nucleic acid binding domain | 190 | 273 | IPR004365 | GO:0003676(InterPro) | |
| Lac3g0557 | 623 | SUPERFAMILY | Nucleic acid-binding proteins | 3 | 112 | IPR012340 | - | |
| Lac3g0557 | 623 | CDD | RPA1_DBD_C | 455 | 619 | IPR047192 | - | |
| Lac3g0557 | 623 | FunFam | Replication protein A subunit | 176 | 285 | - | - | |
| Lac3g0557 | 623 | SUPERFAMILY | Nucleic acid-binding proteins | 446 | 620 | IPR012340 | - | |
| Lac3g0557 | 623 | Pfam | Replication factor-A C terminal domain | 467 | 613 | IPR013955 | - | |
| Lac3g0557 | 623 | FunFam | Replication protein A subunit | 433 | 620 | - | - | |
| Lac3g0557 | 623 | NCBIfam | replication factor-a protein 1 (rpa1) | 6 | 619 | IPR004591 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Lac3g0557 | 623 | Gene3D | - | 174 | 282 | IPR012340 | - | |
| Lac3g0557 | 623 | SUPERFAMILY | Nucleic acid-binding proteins | 178 | 286 | IPR012340 | - | |
| Lac3g0557 | 623 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Lac3g0557 | 623 | SUPERFAMILY | Nucleic acid-binding proteins | 295 | 424 | IPR012340 | - | |
| Lac3g0557 | 623 | Gene3D | - | 290 | 430 | IPR012340 | - | |
| Lac3g0557 | 623 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Lac3g0557 | 623 | Gene3D | - | 431 | 620 | IPR012340 | - | |
| Lac3g0557 | 623 | Pfam | Replication protein A OB domain | 309 | 404 | IPR031657 | - | |
| Lac3g0557 | 623 | Coils | Coil | 538 | 558 | - | - | |
| Lac3g0557 | 623 | FunFam | Replication protein A subunit | 4 | 114 | - | - | |
| Lac3g0557 | 623 | FunFam | Replication protein A subunit | 289 | 428 | - | - | |
| Lac3g0557 | 623 | CDD | RPA1_DBD_B | 312 | 418 | - | - | |
| Lac3g0557 | 623 | Gene3D | - | 6 | 113 | IPR012340 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac3g0557 | Lac-Chr3:4267892 | Lac6g3094 | Lac-Chr6:48424725 | 2.90E-82 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac3g0557 | K07466 | - | csv:101208545 | 1104.74 |