Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0557 ATGGCGAACACACCAACCACCGGTGGGATTTCAAAGATTTTGGCGAATCCATCCCCGGATTCTCCCTCCGATGTCCCCGAGGTCGTGCTTCAGGTCCTCGATCTCAAGGCGACGGGAAATCGCTACATGTTTACTGCTAGCGATGGGGATATGAAGCTAAAGGCTATTCTTCCATCAAATCTGACGTCTGAGGTTATATCTGGAAACATTCAAAATTTGGGTCTTATTCGCGTTCTTGATTATTCTCTCAATGACATCCCGAACAAGCCAGAAAAGTATCTAATCGTGACGAAATGTGAGGTGGTATCTACTGCTCTAGAAAAGGAGGTAAAAATCGAGGTTAAGAAAGAGGAAGCAGATATTGTTTTGAAACCAAAACAAGAGTTCGATGACAAGAGCACATTTAATAATGGATCTGGTATTCTTTTAAAACCAAAGCAAGAATTGGTTGCCAAATCAGCTGCTCAGATTGTACACGAGCAGCGTACAAATATGGCACCAGCTGCACGGATGTCCATGACAAGGCGAGTTCATCCCCTTGTCTACTTAAATCCTTACCAGGGAGATTGGACCATCAAAGTCCGTGTTACAGACAAGGGAAACCTACGTACATACAAGAATGCTCAAGGAGAAGGTTGTGTTTTCAATGTGGTGTTGACAGATGAAGATGGTACACAAATACAAGCAACGATGTTCAATGACGCTGCAAGGAAGTTCTATGAAAAGTTTGCCCTCGGCAAAGTTTACTACATTTCCAGGGGGACTTTGAAAGTTGCTAATAAGAAGTTTAAGACAGTTGAAAATGATTATGAAATGACTTTAAATGTGAACTCTCAAGTAGACGAGGTCAGCAATGAAGCAGCTTTCGTTCCTGAAACAAAATTTAATTTTGTCAAGATTGATATGTTAGGTCCTCACGTGAATGGAAGGGATCTTGTTGATGTTATTGGAGTTGTTCAAAGCGTTTCTCCAACGATGAGCATTCGAAGGAAAATCAACAATGAGACAGCTCCAAAACGTGATGTAACTATTGCTGATGAGACGAAGAAGACAGTTGTGATATCTTTGTGGAATGATCTTGCGACTAGTGTGGGGCAGGAGTTGCTTGACATTGCCGATCAATCTCCTATAATTGCAGTGAAGTATCTTAGAGTTGGAGATTTTCAAGGTGTATCTTTGTCTACAATAAGTAGAAGCTCAATTTTAATAAATCCAGACATAAAGGAAGCACATCATTTGAGATCCTGGTACGACTCTGAAGGAAAAGCCATATCCATGGCTTCTGTAAGCTCTGGTCTGAGCCCATCATCCAAGAGCGGGTCGAGGTCCATGTACTCTGACCGGATCTCCCTCTCTCATATACTCCAAAACAAATCTTTGGGAGAAGAAAAGCCCATGTTCTTCAGCATCAGAGCATATGTCAGCTTTATTAAGCCTGATCAAACAATGTGGTATCGGGCTTGTAAAACATGTAACAAGAAGGTGACTGAAGCCATTGGATCTGGATACTGGTGCGAAGGTTGCCAGAAGAATGACGAAGAATGCAGTTTAAGGTACATAATGGTTGTGAGAGTTTCTGATGCAAGTGGCGAAGCTTGGTTCTCTACATTCAATGAAGAAGCAGAGAGGATTATTGGATGCTCTGCTGATGAGCTTGACCAGCTCAAATCACAGATTGGAGAGGAGAATTCATATCAACTGAAACTCAAAGAAGCCACCTGGGTTCCCCATTTATTTCGAGTTAGTGTTTCTCAGAATGAATACAACAATGAGAAGAGACAAAGGATCACTGTCAGGTCCGTTGCTCCAGTTGACTTTGCTGCTGAATCTAGATTTTTGCTAGAAGAGATAGCCAAGATGAAAGCTTCCTAG 1872 41.99 MANTPTTGGISKILANPSPDSPSDVPEVVLQVLDLKATGNRYMFTASDGDMKLKAILPSNLTSEVISGNIQNLGLIRVLDYSLNDIPNKPEKYLIVTKCEVVSTALEKEVKIEVKKEEADIVLKPKQEFDDKSTFNNGSGILLKPKQELVAKSAAQIVHEQRTNMAPAARMSMTRRVHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNDAARKFYEKFALGKVYYISRGTLKVANKKFKTVENDYEMTLNVNSQVDEVSNEAAFVPETKFNFVKIDMLGPHVNGRDLVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVISLWNDLATSVGQELLDIADQSPIIAVKYLRVGDFQGVSLSTISRSSILINPDIKEAHHLRSWYDSEGKAISMASVSSGLSPSSKSGSRSMYSDRISLSHILQNKSLGEEKPMFFSIRAYVSFIKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDEECSLRYIMVVRVSDASGEAWFSTFNEEAERIIGCSADELDQLKSQIGEENSYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMKAS 623
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 4267892 4271000 - Lag0034085.1 Lac3g0557 600979
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0557 623 PANTHER REPLICATION FACTOR A 1, RFA1 178 597 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Lac3g0557 623 CDD RPA1_DBD_A 179 282 - -
Lac3g0557 623 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Lac3g0557 623 Pfam OB-fold nucleic acid binding domain 190 273 IPR004365 GO:0003676(InterPro)
Lac3g0557 623 SUPERFAMILY Nucleic acid-binding proteins 3 112 IPR012340 -
Lac3g0557 623 CDD RPA1_DBD_C 455 619 IPR047192 -
Lac3g0557 623 FunFam Replication protein A subunit 176 285 - -
Lac3g0557 623 SUPERFAMILY Nucleic acid-binding proteins 446 620 IPR012340 -
Lac3g0557 623 Pfam Replication factor-A C terminal domain 467 613 IPR013955 -
Lac3g0557 623 FunFam Replication protein A subunit 433 620 - -
Lac3g0557 623 NCBIfam replication factor-a protein 1 (rpa1) 6 619 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Lac3g0557 623 Gene3D - 174 282 IPR012340 -
Lac3g0557 623 SUPERFAMILY Nucleic acid-binding proteins 178 286 IPR012340 -
Lac3g0557 623 MobiDBLite consensus disorder prediction 1 18 - -
Lac3g0557 623 SUPERFAMILY Nucleic acid-binding proteins 295 424 IPR012340 -
Lac3g0557 623 Gene3D - 290 430 IPR012340 -
Lac3g0557 623 MobiDBLite consensus disorder prediction 1 23 - -
Lac3g0557 623 Gene3D - 431 620 IPR012340 -
Lac3g0557 623 Pfam Replication protein A OB domain 309 404 IPR031657 -
Lac3g0557 623 Coils Coil 538 558 - -
Lac3g0557 623 FunFam Replication protein A subunit 4 114 - -
Lac3g0557 623 FunFam Replication protein A subunit 289 428 - -
Lac3g0557 623 CDD RPA1_DBD_B 312 418 - -
Lac3g0557 623 Gene3D - 6 113 IPR012340 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0557 Lac-Chr3:4267892 Lac6g3094 Lac-Chr6:48424725 2.90E-82 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0557 K07466 - csv:101208545 1104.74