Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac3g0567 | ATGGACGAAATTTCCCTCATCGTCGCCGCTGCCTTAACCCTGGCCTCCGCCGTCCTCCTCCACCGTTTTTTAGTCCTCTGCCGCAAATTCCGAACTCTCCGCCTCCCGCCGGGCCCGAAACCATGGCCGATCGTCGGAAACTTGCTGCAAATCGGCGGAGCGCCTCTCCACTCCACTCTCGCCACCATGGCCGGTGAGTACGGACCTCTGATGTACCTCCGATTCGGATCCGTCGACATCGTCGTGGCGGCGTCGGCGGCTGTGGCGGAGCAAATCTTGAAAATTCGCGACACAAATTTCCTCAGCCGGCCGCCGAACGCCGGCGCTAAATATATTGCTTATAATTGTCAGGATATGGTTTTTGCGCCGTACGGTCCACGTTGGCGGTTACTCCGGAAGATCAGCACCGTTCATCTCTTCTCATCAAAAGCCCTAGATGATCATCGGCGTGTACGCGAGGAGGAGGTGGCGGTGCTAGTTGAAGCCGTTGGGAGGGCCGGAGAAGCGCCGGTGGCCTTAGGGAGGTTGCTGACCGTCTGCCTAGCGAATGCGCTTGGACGAGCAATGATCGGGCAGCGTGTTTTCGGCGATGGCGATCCGAAGGTGGACCGGTTTAAGGCAATGGTGGAGCAAGTAATGGTGCTGTCGGGAAAGTTCAACCCCGGCGACTTTTTCCCGTCGCTTGAGTGGCTTGATTTGTTGGGCGTGGCCGCTGAGATGAAGAAGGTCCACAAATGGTTCGATGATTTCTTCACTAATATCCTCCACGAGCACCGGAATTTATTGGCCGGCGCCGGCCAACACCAAGACTTGCTGAGCACGCTTCTTTCCTCGAATGATCATGCTCGAGAAGAGAACGAAAAGCTCAATGACACTGAGATCAAGGCTTTGTTGTTGAACATGTTTACAGCTGGAACCGACACGTCAGCAAGCACAGTAGAGTGGGCCCTGGCAGAGCTGATCAGGCACCCCAAAATGATGGCCCAGGCCCAACAAGAACTAGACTCCGTAGTGGGCCGTGATCGGTTAGTTTCCGATTTGGACCTTCCACAACTGGGCTATCTCCAGGCGGTGGTGAAGGAAACATTCCGGCTCCACCCATCGACGCCGCTCTCCCTCCCCCGCATGGCCGCCGAGAGCTGCGAAATCAACGGCTACCACATCCCTAAAGGCTCCACTCTCTTGGTCAACGTATGGGCCATCGGTCGTGACCCAAAGGAATGGGCCGACCCACTTGAGTTCAGGCCCAATAGGTTCCTCCCTGGCGGCGAGAAGGCCCACGTCGATGTGAAGGGAAACGACTTTGAGGTGATTCCGTTTGGGGCTGGGCGGAGGATCTGCGTGGGGATGAGTTTGGGCCTGAGGATGGTTCAGATGCTAACTGCCACGTTGGTCCATTCCTTTGATTGGGCCTTGCCTATTGGGCTTTCGCCTGATCAGTTGAATATGGACGAGGGCTTTGGGCTCGCGCTGCGTCGGGCCCGACCCTTGGTTTTGCATCCACGGCCCAGATTGTCTCATGGGGTTTATAACTTTATCGAGGGTTGCCTTTGA | 1554 | 56.5 | MDEISLIVAAALTLASAVLLHRFLVLCRKFRTLRLPPGPKPWPIVGNLLQIGGAPLHSTLATMAGEYGPLMYLRFGSVDIVVAASAAVAEQILKIRDTNFLSRPPNAGAKYIAYNCQDMVFAPYGPRWRLLRKISTVHLFSSKALDDHRRVREEEVAVLVEAVGRAGEAPVALGRLLTVCLANALGRAMIGQRVFGDGDPKVDRFKAMVEQVMVLSGKFNPGDFFPSLEWLDLLGVAAEMKKVHKWFDDFFTNILHEHRNLLAGAGQHQDLLSTLLSSNDHAREENEKLNDTEIKALLLNMFTAGTDTSASTVEWALAELIRHPKMMAQAQQELDSVVGRDRLVSDLDLPQLGYLQAVVKETFRLHPSTPLSLPRMAAESCEINGYHIPKGSTLLVNVWAIGRDPKEWADPLEFRPNRFLPGGEKAHVDVKGNDFEVIPFGAGRRICVGMSLGLRMVQMLTATLVHSFDWALPIGLSPDQLNMDEGFGLALRRARPLVLHPRPRLSHGVYNFIEGCL | 517 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 4378230 | 4381637 | - | Lag0034095.1 | Lac3g0567 | 600989 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac3g0567 | 517 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 440 | 449 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac3g0567 | 517 | PRINTS | E-class P450 group I signature | 88 | 109 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0567 | 517 | PRINTS | E-class P450 group I signature | 313 | 339 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0567 | 517 | PRINTS | E-class P450 group I signature | 437 | 447 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0567 | 517 | PRINTS | E-class P450 group I signature | 64 | 83 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0567 | 517 | PRINTS | E-class P450 group I signature | 447 | 470 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0567 | 517 | PRINTS | E-class P450 group I signature | 356 | 374 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0567 | 517 | PRINTS | E-class P450 group I signature | 293 | 310 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0567 | 517 | PRINTS | E-class P450 group I signature | 397 | 421 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0567 | 517 | PANTHER | CYTOCHROME P450 98A9 | 7 | 510 | - | - | |
| Lac3g0567 | 517 | FunFam | Cytochrome P-450 19 | 25 | 502 | - | - | |
| Lac3g0567 | 517 | Pfam | Cytochrome P450 | 36 | 487 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0567 | 517 | Gene3D | Cytochrome P450 | 28 | 507 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0567 | 517 | Coils | Coil | 272 | 292 | - | - | |
| Lac3g0567 | 517 | PRINTS | P450 superfamily signature | 438 | 447 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0567 | 517 | PRINTS | P450 superfamily signature | 304 | 321 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0567 | 517 | PRINTS | P450 superfamily signature | 447 | 458 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0567 | 517 | PRINTS | P450 superfamily signature | 357 | 368 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0567 | 517 | SUPERFAMILY | Cytochrome P450 | 36 | 504 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac3g0567 | Lac-Chr3:4378230 | Lac7g0132 | Lac-Chr7:1051535 | 2.00E-97 | dispersed | |
| Lac7g2916 | Lac-Chr7:48199061 | Lac3g0567 | Lac-Chr3:4378230 | 1.70E-70 | dispersed | |
| Lac3g0567 | Lac-Chr3:4378230 | Lac3g0568 | Lac-Chr3:4384681 | 9.60E-265 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac3g0567 | K05280 | - | csv:101207160 | 803.512 |