Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac3g0568 | ATGGACGAAATTTCCCTCATCGTCGCCGCCGCCGCCGTAACCCTCGCCTCCGCCGTCCTCCTCCACCGCTTCTTATTCCTCCGCCGCAGCTCTCAATCTCTCCGCCTCCCGCCCGGCCCGAAACCATGGCCGATCGTCGGAAACTTGCCGCAAATCGGCGGAGCGCCTCTCCACTCACACCTCGCCGCCATGGCCGGTGAGTATGGACCTCTGATGTACCTCCGATTCGGCTCCGTCGACGTCGTCGTGGCGGCATCGGCGGCGGTGGCGGAGCAATTCCTGAAGATTCGCGACGTTAACTTCCTTAGCCGGCCGCCGAACGCCGGCGCTAAATATATCGCTTATAATTATCAGGATATGGTTTTTGCGCCGTACGGCCCGCGGTGGCGGTTGCTCCGGAAGATCAGCGCCGTCCATCTGTTCTCGTCGAAAGCCCTAGATGATCATCGACGTGTACGCGAGGAGGAAGTAGCGGTGCTAGTACAGACCCTTGCAAGCACCGGCAAAGCACCGGCGACCTTGGCGAGCTTGCTCACAATATGTACAGCGAATGCCCTTGGACGGACGATGATCGGACGACGTGTGTTCGGCGATGGAAGCGACGGTGGCGATCCGAAGGTGGACCGGTTTAAGGCAATGGTGGAGCAAGTAATGGTGCTGTCGGGAAAGTTCAACCCCGGCGACTTTTTCCCGTCGCTTGAGTGGCTTGATTTGTTGGGCGTGGCCGCTGAGATGAAGAAGGTCCACAAATGGTTCGATGATTTCTTGACCAATATCCTCCACGAGCACCGGAATTTATTGGCCGGCTCCGGCGGCAGCCAACATCAAGACTTGCTGAGCATGCTTCTTTCCTCCAAGGACCAAGCTGAAGATGAGAACGAGAAGCTCAGTGACACTGAGATCAAGGCCTTGTTGTTGAACATGTTTACAGCTGGAACCGACACGTCAGCAAGCACAGTAGAGTGGGCCCTAGCAGAGCTGATCAGGCACCCGAAAATGCTGGCCCAGGCCCAACAAGAACTGGACTCCGTAGTGGGCCGCGATCGGTTAGTTTCCGATTTGGACCTTCCACGACTGGGCTATCTCCAGGCGGTGGTGAAGGAAACATTCCGGCTCCACCCACCGACGCCGCTCTCCCTCCCCCGCATGGCCGCCGACAGCTGCGAAATCAACGGCTTCCACATCCCTAAAGGCTCCACTCTCTTGGTCGACGTATGGGCCATCGGTCGCGACCCAAAGGAATGGGCCGACCCACTTGAGTTCAGGCCCAATAGGTTCCTCCCTGGCGGCGAGAAGGCCCACGTCGATGTGAAGGGAAATGACTTTGAGGTGATTCCGTTCGGGGCTGGGCGGAGGATTTGCGTGGGGATGAGTTTGGGCCTGAGGACCGTTCAAATGCTAACTGCCACGTTGGTCCATTCCTTTGATTGGGCCTTGCCTATTGGGCTTTCGCCTGATAAGTTGAACATGGACGAGGCCTTTGGGCTCACTCTGCGTCGGGCCCAACCCTTGGTTCTGCATCCACGGCCCAGGTTATCGCCTGAGGTTTATCAAGGATTGCCTTCTATTGGTTAA | 1575 | 57.71 | MDEISLIVAAAAVTLASAVLLHRFLFLRRSSQSLRLPPGPKPWPIVGNLPQIGGAPLHSHLAAMAGEYGPLMYLRFGSVDVVVAASAAVAEQFLKIRDVNFLSRPPNAGAKYIAYNYQDMVFAPYGPRWRLLRKISAVHLFSSKALDDHRRVREEEVAVLVQTLASTGKAPATLASLLTICTANALGRTMIGRRVFGDGSDGGDPKVDRFKAMVEQVMVLSGKFNPGDFFPSLEWLDLLGVAAEMKKVHKWFDDFLTNILHEHRNLLAGSGGSQHQDLLSMLLSSKDQAEDENEKLSDTEIKALLLNMFTAGTDTSASTVEWALAELIRHPKMLAQAQQELDSVVGRDRLVSDLDLPRLGYLQAVVKETFRLHPPTPLSLPRMAADSCEINGFHIPKGSTLLVDVWAIGRDPKEWADPLEFRPNRFLPGGEKAHVDVKGNDFEVIPFGAGRRICVGMSLGLRTVQMLTATLVHSFDWALPIGLSPDKLNMDEAFGLTLRRAQPLVLHPRPRLSPEVYQGLPSIG | 524 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 4384681 | 4389989 | - | Lag0034096.1 | Lac3g0568 | 600990 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac3g0568 | 524 | Coils | Coil | 279 | 299 | - | - | |
| Lac3g0568 | 524 | Pfam | Cytochrome P450 | 37 | 496 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0568 | 524 | SUPERFAMILY | Cytochrome P450 | 37 | 511 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0568 | 524 | PANTHER | CYTOCHROME P450 98A9 | 5 | 518 | - | - | |
| Lac3g0568 | 524 | Gene3D | Cytochrome P450 | 29 | 515 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0568 | 524 | PRINTS | E-class P450 group I signature | 363 | 381 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0568 | 524 | PRINTS | E-class P450 group I signature | 454 | 477 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0568 | 524 | PRINTS | E-class P450 group I signature | 65 | 84 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0568 | 524 | PRINTS | E-class P450 group I signature | 444 | 454 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0568 | 524 | PRINTS | E-class P450 group I signature | 404 | 428 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0568 | 524 | PRINTS | E-class P450 group I signature | 300 | 317 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0568 | 524 | PRINTS | E-class P450 group I signature | 320 | 346 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0568 | 524 | FunFam | Cytochrome P-450 19 | 26 | 509 | - | - | |
| Lac3g0568 | 524 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 447 | 456 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac3g0568 | 524 | PRINTS | P450 superfamily signature | 454 | 465 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0568 | 524 | PRINTS | P450 superfamily signature | 311 | 328 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0568 | 524 | PRINTS | P450 superfamily signature | 364 | 375 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac3g0568 | 524 | PRINTS | P450 superfamily signature | 445 | 454 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g2235 | Lac-Chr11:38413453 | Lac3g0568 | Lac-Chr3:4384681 | 1.00E-88 | dispersed | |
| Lac3g0568 | Lac-Chr3:4384681 | Lac7g0132 | Lac-Chr7:1051535 | 1.70E-96 | dispersed | |
| Lac3g0567 | Lac-Chr3:4378230 | Lac3g0568 | Lac-Chr3:4384681 | 9.60E-265 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac3g0568 | K05280 | - | csv:101207160 | 809.675 |