Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0593 ATGAGAGGTTCGCACGTAGTTCACTTACTTGGCTCCAACAAACACGAAGGCTATGGCGAATGCCTCTGTCTCTCTCTATGTAACGCTGTTTGTTTCCATCTTCTGTTTCTCTGCAACTCTTTCTTTTCCATTTTTCTACCTTTTTCAACCTCCATTCCTCCAATTCCCATCTCCGCCGTCCCCCCGCCATGTCCCCTCCTCCTCCGCCACCCTCTCCGCCGCCGCCACTCTAACTGTGCAAAAACTCTCCACCCTCCACTTCCGGTGCCCATGGGGGGAGAATTTTCTAGGGCTCCAATCCCTCGAATCCCCTTCTCCTCCCTTTTCCTCCTCCTCTCCCTCTTCCTCTCTATCTCTCTCTCCTCTGCCAAAAACCCCTCCTTCCTTCCCTTTTCCCCTCGCGAACATTACTTGATCGACTGCGGCTCCCCTGACCAAACCCGTCTCGACGACGGCCGGATTTTCAAATCCGATCGCGAATCGACCTCTCTCCTTTCCACCGAAGAAGATGTTCAAATCTCTGTCGATTCCGTCCCCCAAAACGCCACCGTCTCGCCTCTTTCCTCTTGGGCATTGCCTCTCTTCCGCACCGCCAGGATTTTCCCCGGCGATTCCATTTACACTTTCTTCATTTCTCAGCCCGGACGCCATTGGATTCGCCTCTACTTTTACCCTCTTCCTCACCCTAATTACAATCTCTCCGATTCCGTTTTCACTGTCACGACGGACAGTTTCGTCCTCCTTCACGATTTCTCGGTCAATGGCAATTCCAAAATCGCCATCAAGGAGTATCTGATCAACATTACCACCGATCGATTCTCTCTTCAATTCAAACCCAAGAAGAATTCGTTTGCGTTCGTCAATGCCATCGAACTTGTTTCCGCCCCAGATACTCTGTTTTCCGATTCGGCCACCTCTGTTTCTCCGGTGGGGTTTTTTAACGGATTGTCGAATTACGCTCTGCAAATTTGCTACCGAGTTAACGTGGGAGGGCCTGAGCTCCTTCCTCAAAACGATACGCTATCAAGAACATGGGAAACCGATGATGCTTATAACAAATTTCCTCAGGGTTCTAAGAATGTTTCTGTGGCTCTGGGCTCCATTAAATACCCTGAAAATGAAGTGACCCCATTGACTGCTCCGAATTGGGTTTATGCAACTGCGCAGGATCTGCAAGATCCTCAAACAATGCAAGTGAACTTTAATCTGACTTGGAGTTTCAATGTGGAGCAGAGTTACTCGTATTTGATCAGACTCCATTTCTGTGACATTGTGAGCAAAGTCCTCAACAGTTTGTACTTCAATGTTTACATAAATGGGATGATGGGTATTGCAGATCTTGATCTCTCTCAGCTCACTGGCGATCTTTCCACTCCTTACTATAGAGACCTCGTGCTCAATGCCTCCGACATCAAAAACAACTCCATCATGATTCAGGTCGGTCCATCTAATGTGGGTTCAGGGCTTCAAGAAGCGATCCTGAATGGGGTGGAGATCATGAAGATGAGCAACGATGCACAGAGCTTGGATGGATTGTTTTCAGTGGATGGAACATACATGGGAGGCCCAAGATTCGGCACCATGAAAATTGTTGCCATTGTGGGTTTGGCAATGGGAGTGGTGGCGGTTCTGTTTCTTGCAGTTGGGTTCTTGAGATGGCAGAGAAGGCCTCAGGGATGGGAGAAGAGGAACAGTTTCTCTTCATGGCTTCTTCCATTGCATTCAACTCACTCCACTTTGTTCTCTAGCAAAAGCAGTTCCAGAAGATCCAGCGTTTTTGGTTCTCGCAGGGTTAGCAAGACTGGTTTTTCTGGCATCTACACCAATGTGGGCCTCGGTCGTTACTTCTCTCTCCATGAGTTACAGGTTGCTACGCAGAATTTCAACGAGAAAGCAGTGATCGGCGTTGGTGGGTTCGGCAAAGTCTACGTCGGAGCATTAGAAGATGGAACCAAAGTCGCCATTAAACGTGGAAATCCTAGCTCAGACCAAGGCATTAACGAGTTCAGAACTGAGATCGAAATGCTCTCGAAGCTCCGCCATCGCCATCTCGTTTCTCTAATCGGCTACTGCGACGAGCAATCCGAGATGATTCTGGTGTACGAGTACATGGCCAATGGCCCGTTTCGCGACCATTTATATGGCTCAAATCTCCCTCCATTGTCCTGGAAACAGAGGCTCGAAATCTGCATCGGCGCAGCCCGTGGCCTGCACTATCTTCACACTGGAGCATCTCAGGGCATAATCCATCGTGATGTCAAGACCACAAACATTCTTCTTGATGAGAAATTTGTGGCCAAGGTTGCGGATTTTGGGCTTTCCAAAGCTGGCCCATCGCTGGAACAGACCCATGTCAGCACTGCTGTTAAAGGGAGTTTTGGTTACCTTGATCCAGAGTACTTCAGAAGACAACAGTTGACTGACAAATCTGATGTTTACTCATTTGGGGTTGTTCTTTTTGAGGTTCTATGCGCAAGACAAGTCATAAATCCGACATTGCCGCGAGAGCAGGTGAGTTTGGCGGAATGGGCAATGCAAAGCTATAAGAAAGGAAAGCTAGAGAAGATAATCGATCCTCATATTAGCAGCTCAATTGTACAGGGGTCACTGAAGAAATTTGTTGAAGCAGCAGAGAAATGCTTGGCCGAATATGGTGTTGATAGGCCAAGCATGGGAGATGTGCTATGGAACTTAGAATATGCTTTGCAGCTACAAGAGGCAGTGTCAGAGCTCGACGACCCTGAGGAAGACAGATGTGAGGGCTTTGTGGGTTTGGAGACACCAAAACACGATGAACTAAAAGGAGAAACCAGTGCTCCTGTAAGTGATAATACTTCTGAAGTCTCAGTCAGTGCTCCTCTGTTTTCGGATATTCGAAATTTTCAGGGAAGATGA 2895 48.01 MRGSHVVHLLGSNKHEGYGECLCLSLCNAVCFHLLFLCNSFFSIFLPFSTSIPPIPISAVPPPCPLLLRHPLRRRHSNCAKTLHPPLPVPMGGEFSRAPIPRIPFSSLFLLLSLFLSISLSSAKNPSFLPFSPREHYLIDCGSPDQTRLDDGRIFKSDRESTSLLSTEEDVQISVDSVPQNATVSPLSSWALPLFRTARIFPGDSIYTFFISQPGRHWIRLYFYPLPHPNYNLSDSVFTVTTDSFVLLHDFSVNGNSKIAIKEYLINITTDRFSLQFKPKKNSFAFVNAIELVSAPDTLFSDSATSVSPVGFFNGLSNYALQICYRVNVGGPELLPQNDTLSRTWETDDAYNKFPQGSKNVSVALGSIKYPENEVTPLTAPNWVYATAQDLQDPQTMQVNFNLTWSFNVEQSYSYLIRLHFCDIVSKVLNSLYFNVYINGMMGIADLDLSQLTGDLSTPYYRDLVLNASDIKNNSIMIQVGPSNVGSGLQEAILNGVEIMKMSNDAQSLDGLFSVDGTYMGGPRFGTMKIVAIVGLAMGVVAVLFLAVGFLRWQRRPQGWEKRNSFSSWLLPLHSTHSTLFSSKSSSRRSSVFGSRRVSKTGFSGIYTNVGLGRYFSLHELQVATQNFNEKAVIGVGGFGKVYVGALEDGTKVAIKRGNPSSDQGINEFRTEIEMLSKLRHRHLVSLIGYCDEQSEMILVYEYMANGPFRDHLYGSNLPPLSWKQRLEICIGAARGLHYLHTGASQGIIHRDVKTTNILLDEKFVAKVADFGLSKAGPSLEQTHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARQVINPTLPREQVSLAEWAMQSYKKGKLEKIIDPHISSSIVQGSLKKFVEAAEKCLAEYGVDRPSMGDVLWNLEYALQLQEAVSELDDPEEDRCEGFVGLETPKHDELKGETSAPVSDNTSEVSVSAPLFSDIRNFQGR 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4607524 4612466 - Lag0034121.1 Lac3g0593 601015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0593 964 Gene3D - 135 296 - -
Lac3g0593 964 Gene3D - 320 505 - -
Lac3g0593 964 ProSitePatterns Protein kinases ATP-binding region signature. 634 656 IPR017441 GO:0005524(InterPro)
Lac3g0593 964 FunFam Putative receptor-like protein kinase 136 296 - -
Lac3g0593 964 Pfam Malectin-like domain 139 501 IPR024788 -
Lac3g0593 964 FunFam Receptor-like protein kinase FERONIA 320 504 - -
Lac3g0593 964 ProSiteProfiles Protein kinase domain profile. 628 901 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0593 964 PANTHER OS07G0166700 PROTEIN 616 906 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Lac3g0593 964 FunFam Receptor-like protein kinase FERONIA 704 917 - -
Lac3g0593 964 Pfam Protein tyrosine and serine/threonine kinase 631 891 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0593 964 ProSitePatterns Serine/Threonine protein kinases active-site signature. 748 760 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0593 964 FunFam receptor-like protein kinase FERONIA 593 703 - -
Lac3g0593 964 Gene3D Phosphorylase Kinase; domain 1 597 703 - -
Lac3g0593 964 CDD STKc_IRAK 634 899 - -
Lac3g0593 964 SUPERFAMILY Protein kinase-like (PK-like) 604 899 IPR011009 -
Lac3g0593 964 SMART serkin_6 628 901 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0593 964 Gene3D Transferase(Phosphotransferase) domain 1 704 919 - -
Lac3g0593 964 MobiDBLite consensus disorder prediction 924 948 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3043 Lac-Chr1:51060762 Lac3g0593 Lac-Chr3:4607524 3.10E-65 dispersed
Lac2g1300 Lac-Chr2:10838033 Lac3g0593 Lac-Chr3:4607524 2.40E-236 dispersed
Lac3g0593 Lac-Chr3:4607524 Lac9g2521 Lac-Chr9:43902846 7.90E-212 dispersed
Lac3g0593 Lac-Chr3:4607524 Lac4g2841 Lac-Chr4:47036274 2.30E-256 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86064 PF12819 Malectin_like 7.30E-37 CL0202 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0593 - - - 0.0