Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0609 ATGGCGTTTCTTGGACTTCTCTTGGTGGCTTTCGTTCTCTCTTCGGGATGTTACTCGGTCCATGGCAACAATGGAGGTTGGAATGAAGCCCACGCCACGTTCTACGGTGGGGGCGACGCCGCTGGCACAATGGGAGGGGCTTGTGGCTATGGGAACCTGTACAGCCAAGGGTATGGAACGAACACAGCGGCTTTAAGCACAGCCCTATTCAACAATGGACTGAGCTGCGGCGCTTGCTTTGAAATCAAGTGCGTAAACGACCCAAAATGGTGTCTTCCAAATTCCATCGTGGTCACTGCCACGAACTTCTGCCCACCAAACAATGCACTGCCCAACAACGCCGGCGGCTGGTGCAATCCTCCCCAGCACCATTTCGACCTCTCCCAGCCCATCTTCCAGCAAATCGCCCAATACAAAGCCGGCATTGTCCCAGTCGCTTACAGAAGGGTCTCATGTCAGAAGAAAGGAGGCATAAGATTCACAATCAACGGCCATTCTTACTTCAATTTAGTTCTTGTAACAAACGTCGGTGGAGCTGGGGATGTTCATGGGGTGTGGATCAAAGGGTCGAAAACAGGGTGGGAAGCAATGTCGAGGAACTGGGGCCAGAACTGGCAGAGCAATTCATATCTGAATGGACAGAGCCTGTCGTTCAAAGTGACGACCGGCGATGGCCGAACGGTGGTGGCCAAGGACGTTGTGCCAGCTGGGTGGAGCTTTGGTCAGACATTTAGTGGGCTGCAGTTCCCATGA 753 53.39 MAFLGLLLVAFVLSSGCYSVHGNNGGWNEAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDPKWCLPNSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPIFQQIAQYKAGIVPVAYRRVSCQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSYLNGQSLSFKVTTGDGRTVVAKDVVPAGWSFGQTFSGLQFP 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4734490 4735425 + Lag0034137.1 Lac3g0609 601031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0609 250 Gene3D - 155 249 IPR036749 -
Lac3g0609 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Lac3g0609 250 SUPERFAMILY Barwin-like endoglucanases 7 175 IPR036908 -
Lac3g0609 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Lac3g0609 250 FunFam Expansin 157 249 - -
Lac3g0609 250 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
Lac3g0609 250 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Lac3g0609 250 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576(InterPro)
Lac3g0609 250 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576(InterPro)
Lac3g0609 250 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576(InterPro)
Lac3g0609 250 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Lac3g0609 250 SUPERFAMILY PHL pollen allergen 154 245 IPR036749 -
Lac3g0609 250 CDD DPBB_EXPA_N 26 152 - -
Lac3g0609 250 PANTHER EXPANSIN-A15 11 248 IPR002963 GO:0009664(InterPro)
Lac3g0609 250 SMART dpbb_1 62 147 IPR007112 -
Lac3g0609 250 FunFam Expansin 17 153 - -
Lac3g0609 250 Pfam Lytic transglycolase 62 147 IPR009009 -
Lac3g0609 250 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
Lac3g0609 250 PRINTS Expansin signature 115 132 IPR002963 GO:0009664(InterPro)
Lac3g0609 250 PRINTS Expansin signature 96 106 IPR002963 GO:0009664(InterPro)
Lac3g0609 250 PRINTS Expansin signature 232 248 IPR002963 GO:0009664(InterPro)
Lac3g0609 250 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
Lac3g0609 250 PRINTS Expansin signature 168 189 IPR002963 GO:0009664(InterPro)
Lac3g0609 250 PRINTS Expansin signature 156 168 IPR002963 GO:0009664(InterPro)
Lac3g0609 250 PRINTS Expansin signature 132 145 IPR002963 GO:0009664(InterPro)
Lac3g0609 250 PRINTS Expansin signature 203 224 IPR002963 GO:0009664(InterPro)
Lac3g0609 250 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Lac3g0609 250 Gene3D - 12 153 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1239 Lac-Chr13:11115619 Lac3g0609 Lac-Chr3:4734490 1.80E-101 dispersed
Lac3g0609 Lac-Chr3:4734490 Lac6g1639 Lac-Chr6:23683462 4.80E-113 dispersed
Lac10g0088 Lac-Chr10:679323 Lac3g0609 Lac-Chr3:4734490 7.70E-100 wgd
Lac13g0330 Lac-Chr13:2362861 Lac3g0609 Lac-Chr3:4734490 2.90E-118 wgd
Lac3g0609 Lac-Chr3:4734490 Lac8g2698 Lac-Chr8:44428667 1.90E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0609 - - - 0.0