Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac3g0610 | ATGGCCACCGTCACTACTCAAGCTTCCGCCGCCGTATTCCGGCCATGCGCCGCCCGATCGAGGTTCCTTTCTGGTTCTTCCGGTAAACTCCACCGTGAGCTGTCGGTTAAACCCGTGGCTGCCTCGTCGTCTTCATCTCTCAAAGTCGAAGCCAAGAAGGGAGAGTGGTTGCCCGGTCTGCCGTCTCCGGCATACTTAAATGGAAGTCTTCCTGGCGACAACGGATTCGACCCACTGGGTCTGGCGGAGGACCCAGAGAACTTGAGGTGGTTCGTGCAGGCGGAGCTCGTCAACGGGCGGTGGGCGATGTTGGGCGTCGCCGGAATGCTTCTGCCGGAGGTTTTCACGAAGATCGGAATCATCAACGCCCCACAATGGTACGACGCCGGAAAGGCAGAGTACTTCGCATCGTCTTCAACCCTGTTCGTGATCGAGTTCATCCTCTTCCATTACGTCGAAATCAGAAGATGGCAGGACATTAAGAACCCCGGCAGCGTGAACCAAGACCCCATTTTCAAGCAATACAGTTTGCCTCCAAACGAAGTGGGCTACCCTGGTGGCATTTTCAATCCCCTGAACTTCGCCCCGACTCTTGAGGCCAAAGAGAAGGAAATCGCCAATGGGAGACTTGCGATGTTGGCGTTTTTGGGGTTCATTGTGCAACACAATGTGACAGGGAAGGGGCCGTTCGACAACCTGTTGCAGCACATTTCTGACCCATGGCACAACACCATTGTCCAGACGTTCGGTGGCAACTGA | 759 | 55.34 | MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVAASSSSSLKVEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTFGGN | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 4737376 | 4738302 | + | Lag0034138.1 | Lac3g0610 | 601032 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac3g0610 | 252 | PANTHER | CHLOROPHYLL A/B BINDING PROTEIN | 16 | 245 | IPR001344 | GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro) | |
| Lac3g0610 | 252 | Gene3D | Chlorophyll a/b binding protein domain | 63 | 242 | - | - | |
| Lac3g0610 | 252 | FunFam | Chlorophyll a-b binding protein, chloroplastic | 63 | 242 | - | - | |
| Lac3g0610 | 252 | Pfam | Chlorophyll A-B binding protein | 63 | 222 | IPR022796 | - | |
| Lac3g0610 | 252 | SUPERFAMILY | Chlorophyll a-b binding protein | 53 | 249 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g0050 | Lac-Chr13:357170 | Lac3g0610 | Lac-Chr3:4737376 | 1.90E-61 | dispersed | |
| Lac3g0610 | Lac-Chr3:4737376 | Lac6g0319 | Lac-Chr6:2619212 | 1.40E-56 | dispersed | |
| Lac8g2422 | Lac-Chr8:42322227 | Lac3g0610 | Lac-Chr3:4737376 | 5.40E-40 | transposed | |
| Lac10g0087 | Lac-Chr10:677428 | Lac3g0610 | Lac-Chr3:4737376 | 3.60E-132 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac3g0610 | K08910 | - | csv:101222701 | 487.263 |