Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0612 ATGCTGGAAATTATTAAGGACCCTGCCATTAAAATCTTCGGCAAGGAGATTCCGCTTCCGGCTGACTCTGAAGTTCCCTTGATCGAAACCGATGATTCGGATTCCAGTTTCGACAAAGAAACACCAGATGGAGCAGTGCAAAAGGATGCAGTTGCCGGAAAAGCCACTGAGAGTTCAGCTGCAAGAGAAGAAACTCTTCCTGATTCAGAGGATTCTGGATGTGTACAAACAGCAAATGAGGCGCACATGAATCCTGAAGTGTTATCAGTAGATGAAAACGATAAGCTCGAAACAAGCAAAACTGAGAAAGAACAGAATGATGCACCCAGCTCGAAAGAAAAATTGAAGAAACCAGATAAAATACTTCCATGTCCCCGCTGCAATAGCATGGAAACCAAGTTTTGTTATTACAATAATTATAATGTCAATCAACCACGCCATTTTTGCAAAGCCTGTCAAAGATACTGGACAGAAGGCGGTACCATGAGGAATGTCCCTGTTGGAGCTGGCCGCCGAAAGAACAAGAACTCTGCCTCACACTACCGACACATTACAATCTCAGAGGCTCTTCAAGCTGCACAAATTGATGTTCCCAACGGGATCAACCACCTAGCATCAAAAAGCAATGGCCGAGTCCTCAATTTCAGTGTAAACGCACCTGTATGTGAATCTATGGCCACTGTCCTCAATCCTGCAGAAAGAAAGGTCTTGAATGGAACTAGGAATGAATTTCATAGACTCGAAGACCAAGGAATTAAAGCACCTTGTAAGGGTGGGGAAACTGGCGATGATTGTTCCAGTGCATCTTCAGTGACAATGTCAAGTTCAATGGAGGAAGGATCCAGGAGGTGCCCTCAAGAACCACAGATGCAGAACATTAATGGTTTCCCTCCTCAAATCCAATATCTTCCTGGTGTTCCTTGGCCTTGTTCATGGAATGCACCAATACCTCCACCAGCCTTTTGCCCTCCTGGAGTTCCTTTATCATTCTACCCTGCAACATATTGGAGCTGTAGCGTTCCAGGTGCTTGGAATATTCCTTGGTTCACTCCACAACCCTGTTCTCCAAACACTGGTCCAAGTTCACCTACACTAGGGAAGCATTCCAGAGATAGTGACAAACTCCAGGCTGATAATTCTGAGATGGAAGAACCTCCAAAACAGAAAAATGGATCTGTTTTGGTTCCCAAAACTTTAAGGATTGATGATCCGAATGAAGCCGCTAAGAGTTCAATATGGGAGACACTTGGTATTAAGAATGATTCGATCAAAGCGGTCGATCTGTCTAAAGTCTTCCAATCAAAGGGTGTTCAAAAGAATAACGTCTCTGAAGTGTTATCTCCAGTTTTGCAAGCTAACCCTGCAGCCTTGTCAAGATCTCTTACTTTCCAAGAGCGGTCGTGA 1404 44.23 MLEIIKDPAIKIFGKEIPLPADSEVPLIETDDSDSSFDKETPDGAVQKDAVAGKATESSAAREETLPDSEDSGCVQTANEAHMNPEVLSVDENDKLETSKTEKEQNDAPSSKEKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAAQIDVPNGINHLASKSNGRVLNFSVNAPVCESMATVLNPAERKVLNGTRNEFHRLEDQGIKAPCKGGETGDDCSSASSVTMSSSMEEGSRRCPQEPQMQNINGFPPQIQYLPGVPWPCSWNAPIPPPAFCPPGVPLSFYPATYWSCSVPGAWNIPWFTPQPCSPNTGPSSPTLGKHSRDSDKLQADNSEMEEPPKQKNGSVLVPKTLRIDDPNEAAKSSIWETLGIKNDSIKAVDLSKVFQSKGVQKNNVSEVLSPVLQANPAALSRSLTFQERS 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4746171 4748540 - Lag0034140.1 Lac3g0612 601034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0612 467 MobiDBLite consensus disorder prediction 17 118 - -
Lac3g0612 467 MobiDBLite consensus disorder prediction 263 286 - -
Lac3g0612 467 MobiDBLite consensus disorder prediction 87 118 - -
Lac3g0612 467 ProSitePatterns Zinc finger Dof-type signature. 124 160 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac3g0612 467 PANTHER CYCLIC DOF FACTOR 2 6 466 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0612 467 MobiDBLite consensus disorder prediction 252 286 - -
Lac3g0612 467 MobiDBLite consensus disorder prediction 355 400 - -
Lac3g0612 467 Pfam Dof domain, zinc finger 120 176 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac3g0612 467 ProSiteProfiles Zinc finger Dof-type profile. 122 176 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac3g0612 467 MobiDBLite consensus disorder prediction 367 385 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0612 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0612 Lac-Chr3:4746171 Lac8g0724 Lac-Chr8:13372910 5.50E-102 dispersed
Lac13g1022 Lac-Chr13:8623783 Lac3g0612 Lac-Chr3:4746171 2.30E-18 transposed
Lac2g0356 Lac-Chr2:2692582 Lac3g0612 Lac-Chr3:4746171 1.80E-18 transposed
Lac10g0082 Lac-Chr10:647831 Lac3g0612 Lac-Chr3:4746171 6.40E-121 wgd
Lac13g0326 Lac-Chr13:2339726 Lac3g0612 Lac-Chr3:4746171 1.00E-75 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g0947 . 15 170 C2C2-Dof Transcription Factor Family AT1G29160 52.5 1.6e-41 166.8
Lac10g0947 . 15 170 C2C2-Dof Transcription Factor Family AT2G34140 50.9 1.1e-39 160.6
Lac8g2507 . 1 136 C2C2-Dof Transcription Factor Family AT2G37590 66.7 6.8e-38 155.6
Lac7g2704 . 67 141 C2C2-Dof Transcription Factor Family AT2G37590 90.7 4.4e-37 152.9
Lac3g0612 . 115 466 C2C2-Dof Transcription Factor Family AT3G47500 53.1 2.2e-87 320.5
Lac8g0724 . 149 514 C2C2-Dof Transcription Factor Family AT3G47500 50.3 5.0e-76 282.7
Lac1g2524 . 1 149 C2C2-Dof Transcription Factor Family AT5G66940 56.3 2.7e-38 156.4
Lac7g2704 . 66 141 C2C2-Dof Transcription Factor Family AT5G02460 90.8 2.8e-38 157.1
Lac1g2032 . 53 126 C2C2-Dof Transcription Factor Family AT5G02460 87.8 9.0e-37 152.1
Lac10g3099 . 52 134 C2C2-Dof Transcription Factor Family AT3G55370 81.9 2.9e-37 153.7
Lac3g0537 . 29 325 C2C2-Dof Transcription Factor Family AT5G60850 52.9 2.4e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009303 0 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23591 PF02701 zf-Dof 2.50E-32 No_clan Lac TF