Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0612 ATGCTGGAAATTATTAAGGACCCTGCCATTAAAATCTTCGGCAAGGAGATTCCGCTTCCGGCTGACTCTGAAGTTCCCTTGATCGAAACCGATGATTCGGATTCCAGTTTCGACAAAGAAACACCAGATGGAGCAGTGCAAAAGGATGCAGTTGCCGGAAAAGCCACTGAGAGTTCAGCTGCAAGAGAAGAAACTCTTCCTGATTCAGAGGATTCTGGATGTGTACAAACAGCAAATGAGGCGCACATGAATCCTGAAGTGTTATCAGTAGATGAAAACGATAAGCTCGAAACAAGCAAAACTGAGAAAGAACAGAATGATGCACCCAGCTCGAAAGAAAAATTGAAGAAACCAGATAAAATACTTCCATGTCCCCGCTGCAATAGCATGGAAACCAAGTTTTGTTATTACAATAATTATAATGTCAATCAACCACGCCATTTTTGCAAAGCCTGTCAAAGATACTGGACAGAAGGCGGTACCATGAGGAATGTCCCTGTTGGAGCTGGCCGCCGAAAGAACAAGAACTCTGCCTCACACTACCGACACATTACAATCTCAGAGGCTCTTCAAGCTGCACAAATTGATGTTCCCAACGGGATCAACCACCTAGCATCAAAAAGCAATGGCCGAGTCCTCAATTTCAGTGTAAACGCACCTGTATGTGAATCTATGGCCACTGTCCTCAATCCTGCAGAAAGAAAGGTCTTGAATGGAACTAGGAATGAATTTCATAGACTCGAAGACCAAGGAATTAAAGCACCTTGTAAGGGTGGGGAAACTGGCGATGATTGTTCCAGTGCATCTTCAGTGACAATGTCAAGTTCAATGGAGGAAGGATCCAGGAGGTGCCCTCAAGAACCACAGATGCAGAACATTAATGGTTTCCCTCCTCAAATCCAATATCTTCCTGGTGTTCCTTGGCCTTGTTCATGGAATGCACCAATACCTCCACCAGCCTTTTGCCCTCCTGGAGTTCCTTTATCATTCTACCCTGCAACATATTGGAGCTGTAGCGTTCCAGGTGCTTGGAATATTCCTTGGTTCACTCCACAACCCTGTTCTCCAAACACTGGTCCAAGTTCACCTACACTAGGGAAGCATTCCAGAGATAGTGACAAACTCCAGGCTGATAATTCTGAGATGGAAGAACCTCCAAAACAGAAAAATGGATCTGTTTTGGTTCCCAAAACTTTAAGGATTGATGATCCGAATGAAGCCGCTAAGAGTTCAATATGGGAGACACTTGGTATTAAGAATGATTCGATCAAAGCGGTCGATCTGTCTAAAGTCTTCCAATCAAAGGGTGTTCAAAAGAATAACGTCTCTGAAGTGTTATCTCCAGTTTTGCAAGCTAACCCTGCAGCCTTGTCAAGATCTCTTACTTTCCAAGAGCGGTCGTGA 1404 44.23 MLEIIKDPAIKIFGKEIPLPADSEVPLIETDDSDSSFDKETPDGAVQKDAVAGKATESSAAREETLPDSEDSGCVQTANEAHMNPEVLSVDENDKLETSKTEKEQNDAPSSKEKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAAQIDVPNGINHLASKSNGRVLNFSVNAPVCESMATVLNPAERKVLNGTRNEFHRLEDQGIKAPCKGGETGDDCSSASSVTMSSSMEEGSRRCPQEPQMQNINGFPPQIQYLPGVPWPCSWNAPIPPPAFCPPGVPLSFYPATYWSCSVPGAWNIPWFTPQPCSPNTGPSSPTLGKHSRDSDKLQADNSEMEEPPKQKNGSVLVPKTLRIDDPNEAAKSSIWETLGIKNDSIKAVDLSKVFQSKGVQKNNVSEVLSPVLQANPAALSRSLTFQERS 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4746171 4748540 - Lag0034140.1 Lac3g0612 601034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0612 467 MobiDBLite consensus disorder prediction 17 118 - -
Lac3g0612 467 MobiDBLite consensus disorder prediction 263 286 - -
Lac3g0612 467 MobiDBLite consensus disorder prediction 87 118 - -
Lac3g0612 467 ProSitePatterns Zinc finger Dof-type signature. 124 160 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac3g0612 467 PANTHER CYCLIC DOF FACTOR 2 6 466 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
Lac3g0612 467 MobiDBLite consensus disorder prediction 252 286 - -
Lac3g0612 467 MobiDBLite consensus disorder prediction 355 400 - -
Lac3g0612 467 Pfam Dof domain, zinc finger 120 176 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac3g0612 467 ProSiteProfiles Zinc finger Dof-type profile. 122 176 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac3g0612 467 MobiDBLite consensus disorder prediction 367 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0612 Lac-Chr3:4746171 Lac8g0724 Lac-Chr8:13372910 5.50E-102 dispersed
Lac13g1022 Lac-Chr13:8623783 Lac3g0612 Lac-Chr3:4746171 2.30E-18 transposed
Lac2g0356 Lac-Chr2:2692582 Lac3g0612 Lac-Chr3:4746171 1.80E-18 transposed
Lac10g0082 Lac-Chr10:647831 Lac3g0612 Lac-Chr3:4746171 6.40E-121 wgd
Lac13g0326 Lac-Chr13:2339726 Lac3g0612 Lac-Chr3:4746171 1.00E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23591 PF02701 zf-Dof 2.50E-32 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0612 - - - 0.0