Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0618 ATGGCCACAACTTGGAGGCCCAAGTGTGAAGTCGTCGCCATTGAAGAGCCTTTTCCTTTATCATGCCAACTTTCTCCTCTCCATTTTAGAAGCTACAACAATTCTGCGTTGGATTGGAACTGCAACAATTTTGGGTTTCAAGACGGCATTTTTGACGTCGTTCCATTGCTTGAGAGTTGCCCAAATGATTCCTTTTTCGACCCCAAGGATATCGAACCCATTAACACCTTTATCTCAGCTGAAGATGGGGTTGGGATTTGGGGCGAAATGGAACGTGGATTTGGGGTTTTGGAAGAGCCTCGAGAAAATGGAGAGGAAAAAGAGCAGATTATTACGATGAGGGGAAAAAGAAAGTGCAGAGATCAAACGAGCAACAGTTCATCAAAAACGTTGTCGAGAAAGACAATATCTCAATTCTTCTACATGCCCATCACTCAGGCGGCTAAAGAGTTGAACGTGGGACTCACTCTGTTGAAGAAGAGATGTAGAGAATTGGGAATAAGAAGATGGCCTCATAGGAAGTTGATGAGCCTCCAAACCCTAATCAAGAACGAGTTTCAAAAGGAGGAAGGAGAGGGGGAAGGGAATGGAATGAAGTTGAGCAATGTGTTGGAAATATTAGAGAATGAGAAGAAGTTAATGGAGGAAAGACCAGATTTGCAGTTGGAGGACAATACGAAGAGGCTAAGACAAGCCTGTTTCAAGGCCAACTACAAGAAAAGAAAGCTCTCAGGAATGAACAATTTGCAGTATTTCTCTTCGGGGATCAACATTCATGAAGGGATTGAAGAAGATGAAGAAGATGAAGAAGAAGATGAAGAAATGAAATATCTGTTGTCGGATTGTTCATTTTCGTCGAGTAGTTGCAGCCTGTTGCTGTAA 882 42.63 MATTWRPKCEVVAIEEPFPLSCQLSPLHFRSYNNSALDWNCNNFGFQDGIFDVVPLLESCPNDSFFDPKDIEPINTFISAEDGVGIWGEMERGFGVLEEPRENGEEKEQIITMRGKRKCRDQTSNSSSKTLSRKTISQFFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNEFQKEEGEGEGNGMKLSNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGMNNLQYFSSGINIHEGIEEDEEDEEEDEEMKYLLSDCSFSSSSCSLLL 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4780738 4781964 - Lag0034146.1 Lac3g0618 601040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0618 293 Pfam RWP-RK domain 131 178 IPR003035 -
Lac3g0618 293 Coils Coil 197 217 - -
Lac3g0618 293 PANTHER PROTEIN RKD4 122 249 IPR044607 GO:0003700(InterPro)
Lac3g0618 293 ProSiteProfiles RWP-RK domain profile. 113 199 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0618 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3092 Lac-Chr1:51396417 Lac3g0618 Lac-Chr3:4780738 1.10E-16 dispersed
Lac3g0618 Lac-Chr3:4780738 Lac5g3052 Lac-Chr5:48366090 6.90E-26 dispersed
Lac3g0618 Lac-Chr3:4780738 Lac2g0484 Lac-Chr2:3526380 1.90E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g0618 . 64 247 AtRKD Transcription Factor Family AT1G18790 54.8 8.2e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23592 PF02042 RWP-RK 9.30E-21 No_clan Lac TF