Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0618 ATGGCCACAACTTGGAGGCCCAAGTGTGAAGTCGTCGCCATTGAAGAGCCTTTTCCTTTATCATGCCAACTTTCTCCTCTCCATTTTAGAAGCTACAACAATTCTGCGTTGGATTGGAACTGCAACAATTTTGGGTTTCAAGACGGCATTTTTGACGTCGTTCCATTGCTTGAGAGTTGCCCAAATGATTCCTTTTTCGACCCCAAGGATATCGAACCCATTAACACCTTTATCTCAGCTGAAGATGGGGTTGGGATTTGGGGCGAAATGGAACGTGGATTTGGGGTTTTGGAAGAGCCTCGAGAAAATGGAGAGGAAAAAGAGCAGATTATTACGATGAGGGGAAAAAGAAAGTGCAGAGATCAAACGAGCAACAGTTCATCAAAAACGTTGTCGAGAAAGACAATATCTCAATTCTTCTACATGCCCATCACTCAGGCGGCTAAAGAGTTGAACGTGGGACTCACTCTGTTGAAGAAGAGATGTAGAGAATTGGGAATAAGAAGATGGCCTCATAGGAAGTTGATGAGCCTCCAAACCCTAATCAAGAACGAGTTTCAAAAGGAGGAAGGAGAGGGGGAAGGGAATGGAATGAAGTTGAGCAATGTGTTGGAAATATTAGAGAATGAGAAGAAGTTAATGGAGGAAAGACCAGATTTGCAGTTGGAGGACAATACGAAGAGGCTAAGACAAGCCTGTTTCAAGGCCAACTACAAGAAAAGAAAGCTCTCAGGAATGAACAATTTGCAGTATTTCTCTTCGGGGATCAACATTCATGAAGGGATTGAAGAAGATGAAGAAGATGAAGAAGAAGATGAAGAAATGAAATATCTGTTGTCGGATTGTTCATTTTCGTCGAGTAGTTGCAGCCTGTTGCTGTAA 882 42.63 MATTWRPKCEVVAIEEPFPLSCQLSPLHFRSYNNSALDWNCNNFGFQDGIFDVVPLLESCPNDSFFDPKDIEPINTFISAEDGVGIWGEMERGFGVLEEPRENGEEKEQIITMRGKRKCRDQTSNSSSKTLSRKTISQFFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNEFQKEEGEGEGNGMKLSNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGMNNLQYFSSGINIHEGIEEDEEDEEEDEEMKYLLSDCSFSSSSCSLLL 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4780738 4781964 - Lag0034146.1 Lac3g0618 601040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0618 293 Pfam RWP-RK domain 131 178 IPR003035 -
Lac3g0618 293 Coils Coil 197 217 - -
Lac3g0618 293 PANTHER PROTEIN RKD4 122 249 IPR044607 GO:0003700(InterPro)
Lac3g0618 293 ProSiteProfiles RWP-RK domain profile. 113 199 IPR003035 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3092 Lac-Chr1:51396417 Lac3g0618 Lac-Chr3:4780738 1.10E-16 dispersed
Lac3g0618 Lac-Chr3:4780738 Lac5g3052 Lac-Chr5:48366090 6.90E-26 dispersed
Lac3g0618 Lac-Chr3:4780738 Lac2g0484 Lac-Chr2:3526380 1.90E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23592 PF02042 RWP-RK 9.30E-21 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0618 - - - 0.0