Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0633 ATGGAGGCTGAAGCTCTGCCAACCAAAGATGATAGAGTTCAACCAAACGGAGGAGATCATGAAGAAGCTGCTGCCAAACAAGATGTTCTTCACAAGGTGACTTTTATGGCTGACTTGGAAAAGCCCTCCATGGAACCCCTCTCAGTCGCATCAGCTTCTTCAACTTGGAAGGAAGAGGATGATCATCAACATGAACAGAGAATCAAAATGGCGAAAGTTGAAATGAGCCAAGATTACGAGAGCCTGAAAAGGCAGTTCCATGACATAACAACTCAAAGAGAAGGTAAAAAATCGACACAAACAAGTGCGAGTACCATTAACAATGACGAGGTTGAAGAAGTGGACGACATGGTTTCACTCACATTGGGAAGATTCTCAAGCTGCGATAATCAAAACAAGAACACTTCTTCTTCAGAAAGAAAATTGGATCATAAACTGTTGGAGCTGAAAACCCCATCAAATAATGATCATATTCAAAGCCCAACTGATAGTGAAGCTAAAGATCAGGAAGAAGCCGGAGAGACTTGGCCGCCGAGTAAGGCGTTGAAGGGTTTGCCAGCTCCGGCGACCGGAGAAGATGAAGTCTCTCAGCAGAATCCTCCCAAGAAAGCTAGGGTTTGTGTGAGAGCTCGGTGTGATACCCCAACGATGAATGATGGATGTCAATGGAGGAAATATGGACAGAAGATTGCAAAGGGAAATCCTTGCCCTAGAGCTTATTATCGTTGCACTGGTGCACCTTCATGTCCAGTTAGGAAACAGGTGCAAAGGAGTGTTGATGATATTTCCATACTAATCACCACCTATGAAGGAACTCACAACCACCCTCTTCCTGTTTCAGCCATGGCCATGGCTTCCACGACCTCGGCCGCTGCCTCGATGCTCCTCTCGGGCCCTTCCTCCTCCTCCACCTCTCGGCCCGGACTTAACCCTTCGTCGTCGATCGCCACCGCGGCAAACCTCCATGGAATGAACTTGTACCTCTCCAACAACACCAATAACCCAAAGCAATTCTACTTGCCAAACTCTTCAATGCTATCTTCTTCTCTAAACCACCCCACAATCACTTTAGACCTCACTTCAAACCCTCCCTCAACTTCCTCCTCCTCCTCTCCTTTCCAATATAAAATCCCTTCAACTTATCCCCCAAAATATCCCTTCACCAGCCTTGATTTTGGCTCTTCTCAACCCAACAACTTCATGTCTAATTGGAACAATAATAATAACAACCAACCTTATAATAATATCACAAAAAATGCAATAGGAATAGCAACATCAGACCTTTCCAAACAGCTCCCTCTCCATAGCAACATCTATCAAGCCTGCCTTCAACAATTTGCCAAACCTTCAACTCCTCCGCTCCCACTCCCGCCGCCGCCGCCTCTGCCCGACACAATAGCGGCAGCAACCAAGGCAATTACGTCGGACCCGAGCTTCCAATCGGCATTGGCGGCTGCCCTAAGCTCGATCATCGGCGGCGAGGGAATTCAGCCTGTGTCTAATGTGTGTGGATCAAGTATGGGGTTTCAGGCTCCTCCATCATTGATATGCTCCAGCTCCAAGAGTCCTTCTTCATCTCCTGGTGATAGTAGAGACAATAATACAAAATGA 1611 46.8 MEAEALPTKDDRVQPNGGDHEEAAAKQDVLHKVTFMADLEKPSMEPLSVASASSTWKEEDDHQHEQRIKMAKVEMSQDYESLKRQFHDITTQREGKKSTQTSASTINNDEVEEVDDMVSLTLGRFSSCDNQNKNTSSSERKLDHKLLELKTPSNNDHIQSPTDSEAKDQEEAGETWPPSKALKGLPAPATGEDEVSQQNPPKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPSCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGPSSSSTSRPGLNPSSSIATAANLHGMNLYLSNNTNNPKQFYLPNSSMLSSSLNHPTITLDLTSNPPSTSSSSSPFQYKIPSTYPPKYPFTSLDFGSSQPNNFMSNWNNNNNNQPYNNITKNAIGIATSDLSKQLPLHSNIYQACLQQFAKPSTPPLPLPPPPPLPDTIAAATKAITSDPSFQSALAAALSSIIGGEGIQPVSNVCGSSMGFQAPPSLICSSSKSPSSSPGDSRDNNTK 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4903828 4907954 - Lag0034161.1 Lac3g0633 601055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0633 536 SMART WRKY_cls 217 277 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac3g0633 536 FunFam probable WRKY transcription factor 31 202 279 - -
Lac3g0633 536 Pfam WRKY DNA -binding domain 218 276 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac3g0633 536 SUPERFAMILY WRKY DNA-binding domain 210 278 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac3g0633 536 MobiDBLite consensus disorder prediction 1 29 - -
Lac3g0633 536 MobiDBLite consensus disorder prediction 295 314 - -
Lac3g0633 536 ProSiteProfiles WRKY domain profile. 212 278 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac3g0633 536 MobiDBLite consensus disorder prediction 44 67 - -
Lac3g0633 536 Gene3D WRKY domain 202 279 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac3g0633 536 MobiDBLite consensus disorder prediction 136 151 - -
Lac3g0633 536 MobiDBLite consensus disorder prediction 86 204 - -
Lac3g0633 536 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 63 494 IPR044810 GO:0003700(InterPro)
Lac3g0633 536 MobiDBLite consensus disorder prediction 514 536 - -
Lac3g0633 536 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0572 Lac-Chr12:6074606 Lac3g0633 Lac-Chr3:4903828 5.20E-45 dispersed
Lac1g3193 Lac-Chr1:52027363 Lac3g0633 Lac-Chr3:4903828 1.30E-42 dispersed
Lac3g0633 Lac-Chr3:4903828 Lac6g0595 Lac-Chr6:4971891 9.30E-21 dispersed
Lac5g2527 Lac-Chr5:43827611 Lac3g0633 Lac-Chr3:4903828 3.40E-46 transposed
Lac10g0367 Lac-Chr10:2868922 Lac3g0633 Lac-Chr3:4903828 1.70E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23596 PF03106 WRKY 9.40E-24 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0633 - - - 0.0