Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0639 ATGGGTCTTTTCATTTGGGTCTTCTCCGTGATTTCAGTAGCAACCCTTTTGAGTCACTGCTCTTTTTCTCTCACTGAAGATGGTTTGACATTGTTGGAAATCAAAAGTGCTTTGAATGACACTAGGAATGTTCTCAGTAATTGGAGCCCTTCAGATGAATCTCCCTGCAAATGGACTGGTATCTCTTGCCATCCCCAGGACTCTCGTGTCAGCTCAATTAATCTTCCATTCATGCAACTAGGAGGGATTATATCTCCCAGCATTGGTAGACTTAGTAGATTGCAGAGACTGGCTCTCCACCAGAATGGCTTACATGGATATATCCCCAATGAACTTGCCAATTGTTCTGAACTTAGAGCTTTGTACCTGAGGGCTAATTATCTTCAAGGTGGGATTCCATCAAATATTGGAAACCTTTCTTACCTTACCATACTTGATTTATCAAGCAATTCCTTTAAGGGCAGTATACCATCATCTATTGGTCGTCTCACACACTTGCGCAATCTGAATTTGTCTACCAACTTTTTCTTTGGAGAAATCCCAGATATTGGAGTTCTAAGTACCTTTGGGAACGACTCGTTCCTTGGTAATCAAGATCTTTGTGGTCGGCAAGTGAACAAGCCGTGTCGGACCTCAATGGGGTTTCCTGCTGTTTTGCCACATGCTGAAAGTGATGAAGCTGCAGTTCCTGCAAAACGATCCTCTCATTACATCAAAGGACTGTTGATTGGTGCAATATCAGCAGCAGGGTTTGTGTTGGTCATACTTCTTATACTCGTGTGGACTCGTTTGCTATCGAAGAAAGAAAGAACTGCAAAGAGTTACATGGAAGTAAAGAAGCAAAAAAATCGCGAATCAAGTGCGAAGCTTATTACGTTCCATGGCGATCTACCGTACCCAACATGTGAGATCATAGAAAAGCTGGAGGCCCTTAATGAAACAAATGTTGTTGGCTCTGGAGGGTTCGGCACCGTGTATCGGATGGTCATGAATGATTGTGGAGCATTTGCTGTAAAGAAAATTGATAGGACTCAAGACGGTTCAGACCAAATAGTTGAAAGAGAACTGGAGATATTGGGAAGCATTAAACACATAAATTTAGTCAAATTGCGTGGTTATTGCAGGCTTCCTTCTTCAAAGCTTCTTATATATGACTATCTGCCAGCGGGTAGCTTAGATGATTTCTTACATGAACATGGACCAGAAAAGTCTTTGGATTGGAGTGCTCGGTTAAACATAGCCCTAGGCTCCGCTCGAGGACTGGCGTACTTGCACCATGATTGCTGTCCAAAGATTGTGCACTGCAACATAAAATCCAGCAACATTCTTCTTGATGGGAACTTAGAGCCACACGTATCCGACTTTGGTCTTGCAAAGCTTTCGGTTGATGGAGATTCCCATGTCACAACGGTTGTTGCTGGCACATTTGGCTATTTGGCTCCAGAATACTTGCAAAGTGGGATAGGAACTGAGAAGTCTGATGTTTATAGCTTTGGAGTTCTGTTGCTGGAGCTTGTAACAGGGAAGAGACCTAGTGATCCATTTTTCTCAAAGAGGGGCTTAAATGTTGTTGGTTGGTTGAACACGCTTCGGGGAGAAGACCAATTGGAGAACATAGTGGATAATAGGTGCAAGAATGCAGATGTCGAAACTGTAGAAGCGATTCTCGAAATAGCGGCGAGGTGCACGGATGGCAACCCAGCAATGCGGCCTGCAATGAACCAAGTATTGCAGCTACTAGAGCAAGAGGTAATGTCACCCTACCCGAGCGATTACTCCGAGTCTCATTCGGATTATTCGTGA 1803 43.65 MGLFIWVFSVISVATLLSHCSFSLTEDGLTLLEIKSALNDTRNVLSNWSPSDESPCKWTGISCHPQDSRVSSINLPFMQLGGIISPSIGRLSRLQRLALHQNGLHGYIPNELANCSELRALYLRANYLQGGIPSNIGNLSYLTILDLSSNSFKGSIPSSIGRLTHLRNLNLSTNFFFGEIPDIGVLSTFGNDSFLGNQDLCGRQVNKPCRTSMGFPAVLPHAESDEAAVPAKRSSHYIKGLLIGAISAAGFVLVILLILVWTRLLSKKERTAKSYMEVKKQKNRESSAKLITFHGDLPYPTCEIIEKLEALNETNVVGSGGFGTVYRMVMNDCGAFAVKKIDRTQDGSDQIVERELEILGSIKHINLVKLRGYCRLPSSKLLIYDYLPAGSLDDFLHEHGPEKSLDWSARLNIALGSARGLAYLHHDCCPKIVHCNIKSSNILLDGNLEPHVSDFGLAKLSVDGDSHVTTVVAGTFGYLAPEYLQSGIGTEKSDVYSFGVLLLELVTGKRPSDPFFSKRGLNVVGWLNTLRGEDQLENIVDNRCKNADVETVEAILEIAARCTDGNPAMRPAMNQVLQLLEQEVMSPYPSDYSESHSDYS 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4952665 4956227 - Lag0034167.1 Lac3g0639 601061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0639 600 SUPERFAMILY L domain-like 25 188 - -
Lac3g0639 600 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 186 - -
Lac3g0639 600 Gene3D Transferase(Phosphotransferase) domain 1 387 591 - -
Lac3g0639 600 ProSitePatterns Protein kinases ATP-binding region signature. 317 340 IPR017441 GO:0005524(InterPro)
Lac3g0639 600 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Lac3g0639 600 Pfam Protein kinase domain 313 578 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0639 600 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Lac3g0639 600 Pfam Leucine Rich Repeat 118 139 IPR001611 GO:0005515(InterPro)
Lac3g0639 600 ProSiteProfiles Protein kinase domain profile. 311 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0639 600 SUPERFAMILY Protein kinase-like (PK-like) 292 586 IPR011009 -
Lac3g0639 600 Gene3D Phosphorylase Kinase; domain 1 270 386 - -
Lac3g0639 600 Gene3D Ribonuclease Inhibitor 25 211 IPR032675 -
Lac3g0639 600 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 178 583 IPR050647 -
Lac3g0639 600 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 387 591 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0639 Lac-Chr3:4952665 Lac5g2273 Lac-Chr5:41421748 3.40E-128 dispersed
Lac11g1754 Lac-Chr11:31813021 Lac3g0639 Lac-Chr3:4952665 4.10E-30 transposed
Lac10g0377 Lac-Chr10:2941527 Lac3g0639 Lac-Chr3:4952665 3.40E-229 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86065 PF00069 Pkinase 2.00E-43 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0639 - - - 0.0