Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0642 ATGGAAGAAAAGGGCGAGAAGCCTGAGGTTCTGGAGGCTGTATTGAAGGAAACTGTGGACTTGGAAAACATACCCATCGAGGAGGTTTTTGATAATCTGAGATGTAGCAAAGAGGGTCTTACCACAGCGGCTGCTGAGGAACGGCTTGTAATTTTTGGTCACAACAAGCTTGAAGAGAAGAAGGAAAGTAAATTCTTAAAGTTTTTGGGGTTTATGTGGAATCCCCTCTCATGGGTAATGGAAGCTGCTGCTATTATGGCCATTGCACTCGCAAATGGTGGAGGAAAGCCTCCTGACTGGCAAGATTTTGTTGGTATTATCGCACTGTTGCTTATCAACTCAACAATCAGTTTTATTGAGGAAAACAATGCCGGTAACGCTGCAGCTGCTCTAATGGCTAGTTTAGCTCCCCAAGCCAAGATTCTTCGAGATGGAAGGTGGAGTGTGCAAGATGCTTCGGTTTTAGTTCCTGGTGATATTATAAGTATCAAACTTGGGGATATAATTCCTGCTGATGCTCGTCTTCTGGAGGGGGATCCATTGAAAATCGATCAGTCTGCTCTTACAGGCGAGTCCCTTCCTGTTACCAAAGGTCCCGGCGACAGCATATACTCTGGTTCTACTTGCAAACAAGGAGAGATTGAAGCGGTGGTCATTGCCACTGGTGTCCATACTTTCTTTGGCAAGGCTGCTCACCTTGTTGACACCACTAATCAAGTGGGCCACTTCCAAAAGGTCTTAACTGCAATAGGAAACTTCTGCATATGTTCAATTGCTCTGGGGATGATTACAGAAATTATTGTAATGTATCCAATTCAAGACCGGGAATATCGTCCTGGAATTGACAACCTTCTTGTGCTTTTGATTGGAGGAATTCCAATTGCCATGCCCACAGTCCTCTCTGTGACAATGGCTATTGGCTCTCATAGGTTGTCTCAGCAGGGTGCTATCACAAAGAGGATGACTGCAATTGAAGAGATGGCAGGTATGGATGTGCTTTGCAGTGACAAGACTGGAACACTGACATTAAACAAGCTAACTGTTGACAAAAATCTTGTTGAGGTTTTTGCTAAAGGAGTGGATGTGGATACTGTGGTTCTAATGGCAGCCCGGGCATCAAGAACAGAGAATCAAGATGCTATTGATACTGCTATTGTTGGGATGCTAGCTGACCCAAAAGAGGCTCGTGCTGGTATTCAAGAAGTACACTTCCTTCCATTTAATCCCACTGATAAGCGGACTGCATTGACTTACATAGACCATGAGGGTAAAATGCATAGAGTCAGCAAGGGTGCACCAGAGCAGATTCTGAACCTTGCACACAATAAGTCGGAGATTGAGCGCAAAGTTCATGCCGTGATTGACAAGTTTGCAGAACGAGGTTTACGCTCTCTTGCTGTGGCATACCAGGAAGTTCCAGATTGTAGGAAGGAAAGTGCTGGAGGTCCATGGCAGTTTATTGGCCTTCTGCCACTGTTCGACCCACCAAGGCATGATAGTGCAGAGACAATAAGGAGGGCTTTAAATCTTGGAGTGAATGTGAAGATGATTACTGGTGACCAGCTGGCCATAGGAAAGGAAACAGGACGTCGCTTGGGGATGGGAACCAACATGTATCCCTCATCTGCTTTATTAGGTCAGGACAAGGACGAGTCCATAGCTGCTTTACCTGTTGATGAACTGATAGAAAAAGCTGATGGTTTTGCTGGTGTTTTTCCTGAGCACAAATATGAGATTGTAAAGCGTCTTCAAGCAAGGAAACATATCTGTGGGATGACTGGCGATGGAGTAAATGATGCTCCAGCCCTTAAAAAAGCAGACATAGGCATAGCTGTCGCTGATGCTACTGATGCTGCTCGTAGTGCTTCAGATATAGTCCTTACAGAGCCTGGTCTGAGTGTTATCATTAGTGCTGTTTTGACCAGCCGAGCAATCTTTCAGAGGATGAAAAATTACACTATATATGCAGTTTCGATCACTATTCGTATAGTGCTTGGTTTCATGTTGCTGGCTCTCATATGGAAATTTGACTTCCCACCTTTTATGGTGCTCATCATTGCCATTCTCAATGATGGTACAATAATGACGATATCAAAAGATAGAGTGAAACCATCTCCTTTGCCTGATAGCTGGAAGCTGGCTGAAATTTTTACAACTGGCATTATACTTGGTGGCTACTTGGCAATGATGACTGTTATCTTCTTTTGGGCAGCTTATAAAACAGACTTCTTTCCACGGATCTTTGGGGTGGCAACTCTTGAGAAAACTGCACATGATGACATTAGGAAACTTGCCTCAGCGATATATTTGCAAGTAAGTACTATAAGTCAGGCTCTCATATTTGTTACACGCTCGCGAAGTTGGTCGTATGTGGAGCGCCCTGGGTTACTGTTGGTTGCAGCTTTTCTGGTTGCACAACTGGTTGCTACTTTAATTGCGGTTTATGCAAATTGGAGCTTTGCTGCCATTGAAGGAATTGGATGGGGTTGGGCTGGTGTTATCTGGCTTTACAACATCATCTTTTACATCCCACTTGATCTCATCAAGTTCTTTATACGATATGCTTTGAGTGGGAGGGCTTGGGATCTTGTTATTGAACAAAGGATTGCCTTTACAAGGCAAAAGGACTTCGGGAAGGAACAACGGGAGCTACAATGGGCTCATGCACAAAGAACATTACATGGATTGCAAGCACCTGACGCCAAGATGTTCCACGAGCGAACTCATTTCACCGAGCTCAATCAAATGGCCGAAGAAGCCAAAAGGAGAGCTGAAATTGCAAGGTTGAGGGAACTACACACCCTGAAAGGCCATGTTGAATCAGTGGTGAGGCTGAAAGGACTTGACATCGACACGATCCAGCAAGCTTACACAGTGTAA 2880 44.55 MEEKGEKPEVLEAVLKETVDLENIPIEEVFDNLRCSKEGLTTAAAEERLVIFGHNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIIALLLINSTISFIEENNAGNAAAALMASLAPQAKILRDGRWSVQDASVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDSIYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIALGMITEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFAKGVDVDTVVLMAARASRTENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDHEGKMHRVSKGAPEQILNLAHNKSEIERKVHAVIDKFAERGLRSLAVAYQEVPDCRKESAGGPWQFIGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAALPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIILGGYLAMMTVIFFWAAYKTDFFPRIFGVATLEKTAHDDIRKLASAIYLQVSTISQALIFVTRSRSWSYVERPGLLLVAAFLVAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDLIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDAKMFHERTHFTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4975235 4980860 - Lag0034170.1 Lac3g0642 601064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0642 959 Gene3D - 137 221 - -
Lac3g0642 959 NCBIfam HAD-IC family P-type ATPase 568 681 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac3g0642 959 NCBIfam HAD-IC family P-type ATPase 106 352 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac3g0642 959 ProSitePatterns E1-E2 ATPases phosphorylation site. 336 342 IPR018303 -
Lac3g0642 959 FunFam Plasma membrane ATPase 346 493 - -
Lac3g0642 959 SFLD C1.7: P-type atpase like 316 644 - -
Lac3g0642 959 Coils Coil 910 930 - -
Lac3g0642 959 SMART Cation_ATPase_N_a_2 20 92 IPR004014 -
Lac3g0642 959 SUPERFAMILY HAD-like 330 640 IPR036412 -
Lac3g0642 959 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 856 IPR023298 -
Lac3g0642 959 Gene3D - 908 959 - -
Lac3g0642 959 Gene3D - 331 630 IPR023214 -
Lac3g0642 959 Pfam haloacid dehalogenase-like hydrolase 330 607 - -
Lac3g0642 959 FunFam Plasma membrane ATPase 137 221 - -
Lac3g0642 959 Pfam E1-E2 ATPase 135 313 - -
Lac3g0642 959 PANTHER CALCIUM-TRANSPORTING ATPASE 22 907 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Lac3g0642 959 FunFam Plasma membrane ATPase 487 641 - -
Lac3g0642 959 SUPERFAMILY Calcium ATPase, transduction domain A 137 234 IPR008250 -
Lac3g0642 959 SFLD p-type atpase 316 644 IPR044492 -
Lac3g0642 959 CDD P-type_ATPase_H 39 850 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Lac3g0642 959 Pfam Cation transporter/ATPase, N-terminus 23 86 IPR004014 -
Lac3g0642 959 Gene3D - 346 493 IPR023299 GO:0000166(InterPro)
Lac3g0642 959 PRINTS H+-transporting ATPase (proton pump) signature 593 609 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac3g0642 959 PRINTS H+-transporting ATPase (proton pump) signature 624 649 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac3g0642 959 PRINTS H+-transporting ATPase (proton pump) signature 450 468 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac3g0642 959 PRINTS H+-transporting ATPase (proton pump) signature 565 581 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac3g0642 959 PRINTS H+-transporting ATPase (proton pump) signature 769 790 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac3g0642 959 Gene3D - 99 824 - -
Lac3g0642 959 FunFam ATPase 4 plasma membrane-type 578 824 - -
Lac3g0642 959 PRINTS P-type cation-transporting ATPase superfamily signature 334 348 - -
Lac3g0642 959 PRINTS P-type cation-transporting ATPase superfamily signature 593 612 - -
Lac3g0642 959 PRINTS P-type cation-transporting ATPase superfamily signature 616 628 - -
Lac3g0642 959 PRINTS P-type cation-transporting ATPase superfamily signature 510 520 - -
Lac3g0642 959 PRINTS P-type cation-transporting ATPase superfamily signature 488 499 - -
Lac3g0642 959 PRINTS P-type cation-transporting ATPase superfamily signature 184 198 - -
Lac3g0642 959 NCBIfam plasma-membrane proton-efflux P-type ATPase 39 815 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0642 Lac-Chr3:4975235 Lac6g1186 Lac-Chr6:11288308 0.00E+00 dispersed
Lac10g0381 Lac-Chr10:2961247 Lac3g0642 Lac-Chr3:4975235 0.00E+00 wgd
Lac3g0642 Lac-Chr3:4975235 Lac8g2662 Lac-Chr8:44135151 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0642 K01535 - csv:101217264 1794.63