Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac3g0644 | ATGGGGCGTAAGAAGAAAGTCATTGATCCGCGTTCTAAACAATCTCCGGCGGCTCGAGGAGTCGCCGTTGATGTTCCAAGTTTAGCGAACGCCGTCGACCACAGTTCGATACCTGATAAGGCAAGTAATCACAACCAAAGTAGGATCGAGCCGGTGTTTGTCAATGAATCGGATGGCTTGTCTTATTCCTCAATTAAACTCGAATGCGAGCGGGCTCTTACCGCGCTTCGGCGTGGGAACCACACTAAGGCACTTAGGCTTATGAAGGAGTTGAGCTCCAGAAATGAGAGCTCTGTCCACTCTGCATTGATTCATCGGGTTCAGGGTACTATTTGTGTGAAAGTAGCATCCATTATTGATGACATGAATACAAAGCAGCGGCATTTGAAGAATGCGATTGAGTCTGCTCGTAAAGCAGTTGAGCTCTCACCAAACTCGATCGAGTTTTCCCATTTCTATGCAAATTTACTGTACGAGGTTGCAAATGATGCGAAAGAGTATGACGAGGTGGTGCAAGAGTGTGAGCGGGCCCTTGGCATTGAAAACCCAATTGATCCCGCTAAGGAAAGCTTGCAGGATGAAAAGAATCAGAAGATACCTACTGCAGAAGCACGGATTACACACGTCCAGACTGAATTGAGGCAGTTAATTCAAAAGTCAAATATATATTCCATATCATCTTGGATGAAGAACTTGGGTAACGGGGAGGAGAAGTTTAGGTTGATTCCGATTAGAAGAGTGACAGAGGACCCAATGGAGGTGAGGTTGGTTCAGGCTAGAAGGGCAAATGAAATTAAGAAGGCAACCAAAACGCCTGAGGAACGAAGGAAGGAGATCGAAGTCCGTGTTGCTGCTGCAAGGCTTTTGCAACAGAAGTCTGAGACACCTCAAATGCAAAACGAAGGAGGTAAAGCTGATCGGACCCTGGATTCATCTTCTGGGTCTGGTACAAGAGTTGGTGAGCGGCGGAAACATGGAAATTTACGGAAACATGGATCGTCAGCTGAAAGGAGGGATTGGGTTCATTCTTTTTGGAATTCCATGAGTATGGAATCAAAGAAAGATTTGCTTAAGATCAAGACAAGTGATCTTAAGACTCATTTTAGTTCTTCAAAGGATGCTTCGGCAAATGAAGTTATTTCAGAAGCTTTGTCCTTTTATGATGCCAATAAAACATGGAAATTTTGGGCTTGCTGCAGATGTGATGAAAAATTTGTGGATTCAGAATCCCATATGCACCATGTGGTTCAGGAGCACATGGGTAACCTTTTGCCGAAAATGCAATCTATCTTGCCACAGAATGTTGACAATGAATGGACCGAAATGCTTCTTAATTGCTCTTGGAAAGCGTTGGATGTTTCAGCTGCAGCTAAAATGCTCACAGATCAAAGAAAGTTCAAAGATTCCGAGTTGGATGAAGATATCTGCTCACAGCATCATTCAGAATCTGATGACTGTTTCAAAGATGCATGGGATTCTTCTCCAGTGAAACATAGATATGGGAATAGTTTAAATGAATGCAATCTTTATGAAAAAGTTACCAACAACGGATTTAAGACCTGTAATGAAAACCAGGGTTCTTTCGTATCATATTCCTTATCTAATAGCTTTCCAGTATCTGATGACTCTGAGCGTACAAAGCTTCTTGAGAAAATTCATGCAGTATTTGAGTTACTTATTCGACATAAATATCTTGCTGCTAGCCATCTAAACAAGGTTATACAATTTACAATGGATGAGTTACAGGGTCTTGCTTCTGGATCTCATCTTCTAAACCAGGGTCTGGACCAAACACCACTATGCATTTGCTTTCTAGGTGCTTCTCAGCTTAGGAAAATCCTCAAGTTCTTGCAAGAACTATGTCAGTCTTGTGGTATTGGTAGATACTCTGATAAAAGTACTGGTCAAATTGAAGATTCAAAGAGTGATAAACAACCTGTTGAAGTCAAAGAGAAAGTTGTTCTCAACAGAGATGCGTCGCTTCTCATCCTCAATGAGTGTTTTCTGTCATCTGATATCCCTCATCCCAATGGTCAGGTTGTAGCCACAGATCATATGCCTGCAACTGCAAAGGATGTTATTGCAAATGGGGTTCTGTCTGAAGTCGATCCTTTTCTATCCTGGATATATGGAGGTCCCTCTAGTGGGGAGCAGTTAGCATCATGGGCACAATCAAAGGAAGAAAAGATACAGCGACGAATGGAAATTTTTCAAATGCTTGAGAAGGAATTTTACCATCTGCAGAGCCTTTGTGAGAGAAAATGTGAGCATTTGAACTACGAGGAAGCATTGCAGTCAGTAGAGGATCTCTGCCTTGAAGAGGGCAAGAAGAGGGAAACTGTGACTGAATTTATCCCCAAGAGTTATGAGTCAGTCCTGAGGAGACGAAGAGAGGAGCTTATTGAGGCTGAAAATGACGTGATGTTTATCGGCAGTAGGTTTGAGTTAGATGCTATAACTAATGTTTTGAAAGAAGCTGAAGCTCTGAATGTTAATCAATTTGGATATGAGGAAAATTTTGCCAGCGTACCTCCTCCGTTATGTGATCTGGAATCTGGTGAAGATGAAGATTGGAGGGCTAAGGATTATCTGCATCAAGTTGATACTTGTATTGAAGTTGCAATACAGAGGCAGAAAGAACAGTTATCTATCGAGATTAGTAAAATTGATGCACGGATCATGCGAAATGTTACTGGAATGCAACAGTTGGAACTTAAGCTTGAACCTGTTTCTGCACATGATTATCAATCAATATTGTTGCCTCTTGTGAACTCATACTTGAGGGCACATTTAGAAGATTTGGCTGAAAAAGATGCCACGAAGAAGTCTGATGCTGCACGAGAAGCATTTTTAGCTGAATTGGCACTGGATTCAAAAAAGGGTATCAGAGGAGGAAATGATAATTCAAGACATGCACATGAGAAGCCGAAGGAAAAGAAAAGGAGCAAGGAGTTTAGGAAAGTCAAGGACTCTAAGGTGGTCAGTGGTCCTGAGCAGGATGTGCTTCATGATGAGGCTGTCGATGGAGATCCCTTTCAAGTTTCATCTGATGGTGATGCTGCAGAGGTGGACATTGCTATTTTTGAGAATGGTGATGCTTTAAGACTACAGGAGGAAGAGTTTAGACGCAAAATTGAGCTGGAAGCAGATGAAAGAAAGCTAGAAGAGACTTTGGAGTATCAAAGACGAATTGAGAATGAGGCTAAACAAAAGCATCTGGCTGAACTACAAAAGAAATCTGCCCAGACAAATCTAGAGAAGAACTTGGCTGTGGCGGTACATGATAATCTCATTGGACTTGTCCCCAATGTTGAGGGTGCTGATGAGTATCTTAAGCCCTCTGTGGTGGATCAATTGGCAGAAAATGATTTGGTTGCCGACTTGTCTAGGAATGGTCCTGCAATGCAAAGCGCTTTTTCAGGTATATCCAATGTAGGAGTTCTGGAGAATAGTTTGCCATCTTCTGACAGGAGGAAGGGGAGGAAAGGTAGACGGCACAAGGTTTCAATCAAACCAGTAGATGGAAATCAGCCTTCACCATCTGATAAGGATAATGTAACCTTTGACAACCAATTGAATGAGCAAGTTAGATATCATGACAATCTCCTAGTAGATAGTGTTAATCCACTTTCCGAAGATAATAGTACAAAGACTTTGAGACGACATGTAGAGGATGATGAGGAAAGATTTCAAGCTGATCTTAAGAAGGCTGTACGCCAGAGCCTTGATGCATTTCAAGAACAGCAGAAATTACCCTTGATTACAAATTCCAGGACACCGTTGATCAGTTATGGTGAAGTAGATAGTAATGGTCTTCCATCAAATGAACTCAATGTTGAAAATGTGGGAGAAGATATATTTGGTACAGGACTTAAGAATGAAGTTGGTGAATATAATTGCTTTCTGAATGTGATTATTCAATCCTTATGGCATTTAAGACGGTTTCGAGAAGAGTTCCTGGGAAGATCTATGACTGAGCATGTTCATGTTGGGGATCCCTGTGTTGTTTGTGCATTATATGAAATATTCGCTGCCTTGAGCATGGCATCTGCAGATGCTAGAAGAGAAGCAGTCGCCCCCACTTCTTTGAGAATAGCTCTGAGCAATCTTTGTCCTGATAGTAATTTCTTCCAAGAGGGCCAGATGAATGACGCCTCTGAAGTGCTGGCAGTCATATTTGATTGCCTACACCAGTCATTGACTCCTAGTTCCAGCGTTTCTGATACAGAATCAGTTGAAAGCAATTGCATGGGGTCTTGGGACTGTGCAAGTGCAACTTGTTTGGTACATTCCATCTTCGGAATGGACATTTTTGAACGAATGAATTGCTATAGTTGTGGCCTGGAATCTAGACATCTGAAGTACACTTCCTTCTTTCACAATATAAATGCTAGTGCCCTTCGAACAATGAAGGTTATGTGTACAGAAAGTTCCTTTGATGAACTTCTGAATGTTGTTGAAATGAATCATCAGCTAGCTTGTGATTTGGATGTTGGTGGTTGTGGAAAGCTCAATTACATTCATCACTTTCTCTCTGCACCGCCACATGTGTTCACAACTGTCTTGGGCTGGCAGAACACTTGTGAGAGTGCTGATGACATCACAGCTACATTAGCTGCTCTAAGTACTGAGATAGATATCAGCGTTCTTTATCGGGGTCTAGATCCAAAGCACACCCATAATTTGGTATCAGTGGTTTGCTATTATGGTCAACACTATCACTGTTTTGCCTACAGTCACGACAAAAAATGCTGGATAATGTATGATGATAGAACTGTTAAGGTAATTGGTGGCTGGCCTGACGTTCTTACCATGTGTGAAAAAGGACACTTGCAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG | 4869 | 41.82 | MGRKKKVIDPRSKQSPAARGVAVDVPSLANAVDHSSIPDKASNHNQSRIEPVFVNESDGLSYSSIKLECERALTALRRGNHTKALRLMKELSSRNESSVHSALIHRVQGTICVKVASIIDDMNTKQRHLKNAIESARKAVELSPNSIEFSHFYANLLYEVANDAKEYDEVVQECERALGIENPIDPAKESLQDEKNQKIPTAEARITHVQTELRQLIQKSNIYSISSWMKNLGNGEEKFRLIPIRRVTEDPMEVRLVQARRANEIKKATKTPEERRKEIEVRVAAARLLQQKSETPQMQNEGGKADRTLDSSSGSGTRVGERRKHGNLRKHGSSAERRDWVHSFWNSMSMESKKDLLKIKTSDLKTHFSSSKDASANEVISEALSFYDANKTWKFWACCRCDEKFVDSESHMHHVVQEHMGNLLPKMQSILPQNVDNEWTEMLLNCSWKALDVSAAAKMLTDQRKFKDSELDEDICSQHHSESDDCFKDAWDSSPVKHRYGNSLNECNLYEKVTNNGFKTCNENQGSFVSYSLSNSFPVSDDSERTKLLEKIHAVFELLIRHKYLAASHLNKVIQFTMDELQGLASGSHLLNQGLDQTPLCICFLGASQLRKILKFLQELCQSCGIGRYSDKSTGQIEDSKSDKQPVEVKEKVVLNRDASLLILNECFLSSDIPHPNGQVVATDHMPATAKDVIANGVLSEVDPFLSWIYGGPSSGEQLASWAQSKEEKIQRRMEIFQMLEKEFYHLQSLCERKCEHLNYEEALQSVEDLCLEEGKKRETVTEFIPKSYESVLRRRREELIEAENDVMFIGSRFELDAITNVLKEAEALNVNQFGYEENFASVPPPLCDLESGEDEDWRAKDYLHQVDTCIEVAIQRQKEQLSIEISKIDARIMRNVTGMQQLELKLEPVSAHDYQSILLPLVNSYLRAHLEDLAEKDATKKSDAAREAFLAELALDSKKGIRGGNDNSRHAHEKPKEKKRSKEFRKVKDSKVVSGPEQDVLHDEAVDGDPFQVSSDGDAAEVDIAIFENGDALRLQEEEFRRKIELEADERKLEETLEYQRRIENEAKQKHLAELQKKSAQTNLEKNLAVAVHDNLIGLVPNVEGADEYLKPSVVDQLAENDLVADLSRNGPAMQSAFSGISNVGVLENSLPSSDRRKGRKGRRHKVSIKPVDGNQPSPSDKDNVTFDNQLNEQVRYHDNLLVDSVNPLSEDNSTKTLRRHVEDDEERFQADLKKAVRQSLDAFQEQQKLPLITNSRTPLISYGEVDSNGLPSNELNVENVGEDIFGTGLKNEVGEYNCFLNVIIQSLWHLRRFREEFLGRSMTEHVHVGDPCVVCALYEIFAALSMASADARREAVAPTSLRIALSNLCPDSNFFQEGQMNDASEVLAVIFDCLHQSLTPSSSVSDTESVESNCMGSWDCASATCLVHSIFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCTESSFDELLNVVEMNHQLACDLDVGGCGKLNYIHHFLSAPPHVFTTVLGWQNTCESADDITATLAALSTEIDISVLYRGLDPKHTHNLVSVVCYYGQHYHCFAYSHDKKCWIMYDDRTVKVIGGWPDVLTMCEKGHLQPQVLFFEAVN | 1622 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 5002983 | 5011514 | + | Lag0034172.1 | Lac3g0644 | 601066 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac3g0644 | 1622 | Gene3D | Cysteine proteinases | 1275 | 1620 | - | - | |
Lac3g0644 | 1622 | ProSiteProfiles | Ubiquitin specific protease (USP) domain profile. | 1289 | 1621 | IPR028889 | - | |
Lac3g0644 | 1622 | MobiDBLite | consensus disorder prediction | 290 | 334 | - | - | |
Lac3g0644 | 1622 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 398 | 419 | IPR013087 | - | |
Lac3g0644 | 1622 | Coils | Coil | 119 | 139 | - | - | |
Lac3g0644 | 1622 | Coils | Coil | 1047 | 1086 | - | - | |
Lac3g0644 | 1622 | MobiDBLite | consensus disorder prediction | 963 | 996 | - | - | |
Lac3g0644 | 1622 | PANTHER | UBIQUITIN SPECIFIC PROTEINASE | 18 | 1620 | IPR052398 | - | |
Lac3g0644 | 1622 | CDD | Peptidase_C19 | 1381 | 1619 | - | - | |
Lac3g0644 | 1622 | Gene3D | Tetratricopeptide repeat domain | 62 | 190 | IPR011990 | GO:0005515(InterPro) | |
Lac3g0644 | 1622 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Lac3g0644 | 1622 | Pfam | Protein of unknown function (DUF627) | 72 | 181 | IPR006866 | - | |
Lac3g0644 | 1622 | SUPERFAMILY | Cysteine proteinases | 1289 | 1619 | IPR038765 | - | |
Lac3g0644 | 1622 | Pfam | Protein of unknown function (DUF629) | 341 | 873 | IPR006865 | - | |
Lac3g0644 | 1622 | Pfam | Ubiquitin carboxyl-terminal hydrolase | 1290 | 1598 | IPR001394 | GO:0004843(InterPro)|GO:0016579(InterPro) | |
Lac3g0644 | 1622 | MobiDBLite | consensus disorder prediction | 1147 | 1186 | - | - | |
Lac3g0644 | 1622 | MobiDBLite | consensus disorder prediction | 961 | 996 | - | - | |
Lac3g0644 | 1622 | MobiDBLite | consensus disorder prediction | 290 | 316 | - | - |
Pathway information
