Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0644 ATGGGGCGTAAGAAGAAAGTCATTGATCCGCGTTCTAAACAATCTCCGGCGGCTCGAGGAGTCGCCGTTGATGTTCCAAGTTTAGCGAACGCCGTCGACCACAGTTCGATACCTGATAAGGCAAGTAATCACAACCAAAGTAGGATCGAGCCGGTGTTTGTCAATGAATCGGATGGCTTGTCTTATTCCTCAATTAAACTCGAATGCGAGCGGGCTCTTACCGCGCTTCGGCGTGGGAACCACACTAAGGCACTTAGGCTTATGAAGGAGTTGAGCTCCAGAAATGAGAGCTCTGTCCACTCTGCATTGATTCATCGGGTTCAGGGTACTATTTGTGTGAAAGTAGCATCCATTATTGATGACATGAATACAAAGCAGCGGCATTTGAAGAATGCGATTGAGTCTGCTCGTAAAGCAGTTGAGCTCTCACCAAACTCGATCGAGTTTTCCCATTTCTATGCAAATTTACTGTACGAGGTTGCAAATGATGCGAAAGAGTATGACGAGGTGGTGCAAGAGTGTGAGCGGGCCCTTGGCATTGAAAACCCAATTGATCCCGCTAAGGAAAGCTTGCAGGATGAAAAGAATCAGAAGATACCTACTGCAGAAGCACGGATTACACACGTCCAGACTGAATTGAGGCAGTTAATTCAAAAGTCAAATATATATTCCATATCATCTTGGATGAAGAACTTGGGTAACGGGGAGGAGAAGTTTAGGTTGATTCCGATTAGAAGAGTGACAGAGGACCCAATGGAGGTGAGGTTGGTTCAGGCTAGAAGGGCAAATGAAATTAAGAAGGCAACCAAAACGCCTGAGGAACGAAGGAAGGAGATCGAAGTCCGTGTTGCTGCTGCAAGGCTTTTGCAACAGAAGTCTGAGACACCTCAAATGCAAAACGAAGGAGGTAAAGCTGATCGGACCCTGGATTCATCTTCTGGGTCTGGTACAAGAGTTGGTGAGCGGCGGAAACATGGAAATTTACGGAAACATGGATCGTCAGCTGAAAGGAGGGATTGGGTTCATTCTTTTTGGAATTCCATGAGTATGGAATCAAAGAAAGATTTGCTTAAGATCAAGACAAGTGATCTTAAGACTCATTTTAGTTCTTCAAAGGATGCTTCGGCAAATGAAGTTATTTCAGAAGCTTTGTCCTTTTATGATGCCAATAAAACATGGAAATTTTGGGCTTGCTGCAGATGTGATGAAAAATTTGTGGATTCAGAATCCCATATGCACCATGTGGTTCAGGAGCACATGGGTAACCTTTTGCCGAAAATGCAATCTATCTTGCCACAGAATGTTGACAATGAATGGACCGAAATGCTTCTTAATTGCTCTTGGAAAGCGTTGGATGTTTCAGCTGCAGCTAAAATGCTCACAGATCAAAGAAAGTTCAAAGATTCCGAGTTGGATGAAGATATCTGCTCACAGCATCATTCAGAATCTGATGACTGTTTCAAAGATGCATGGGATTCTTCTCCAGTGAAACATAGATATGGGAATAGTTTAAATGAATGCAATCTTTATGAAAAAGTTACCAACAACGGATTTAAGACCTGTAATGAAAACCAGGGTTCTTTCGTATCATATTCCTTATCTAATAGCTTTCCAGTATCTGATGACTCTGAGCGTACAAAGCTTCTTGAGAAAATTCATGCAGTATTTGAGTTACTTATTCGACATAAATATCTTGCTGCTAGCCATCTAAACAAGGTTATACAATTTACAATGGATGAGTTACAGGGTCTTGCTTCTGGATCTCATCTTCTAAACCAGGGTCTGGACCAAACACCACTATGCATTTGCTTTCTAGGTGCTTCTCAGCTTAGGAAAATCCTCAAGTTCTTGCAAGAACTATGTCAGTCTTGTGGTATTGGTAGATACTCTGATAAAAGTACTGGTCAAATTGAAGATTCAAAGAGTGATAAACAACCTGTTGAAGTCAAAGAGAAAGTTGTTCTCAACAGAGATGCGTCGCTTCTCATCCTCAATGAGTGTTTTCTGTCATCTGATATCCCTCATCCCAATGGTCAGGTTGTAGCCACAGATCATATGCCTGCAACTGCAAAGGATGTTATTGCAAATGGGGTTCTGTCTGAAGTCGATCCTTTTCTATCCTGGATATATGGAGGTCCCTCTAGTGGGGAGCAGTTAGCATCATGGGCACAATCAAAGGAAGAAAAGATACAGCGACGAATGGAAATTTTTCAAATGCTTGAGAAGGAATTTTACCATCTGCAGAGCCTTTGTGAGAGAAAATGTGAGCATTTGAACTACGAGGAAGCATTGCAGTCAGTAGAGGATCTCTGCCTTGAAGAGGGCAAGAAGAGGGAAACTGTGACTGAATTTATCCCCAAGAGTTATGAGTCAGTCCTGAGGAGACGAAGAGAGGAGCTTATTGAGGCTGAAAATGACGTGATGTTTATCGGCAGTAGGTTTGAGTTAGATGCTATAACTAATGTTTTGAAAGAAGCTGAAGCTCTGAATGTTAATCAATTTGGATATGAGGAAAATTTTGCCAGCGTACCTCCTCCGTTATGTGATCTGGAATCTGGTGAAGATGAAGATTGGAGGGCTAAGGATTATCTGCATCAAGTTGATACTTGTATTGAAGTTGCAATACAGAGGCAGAAAGAACAGTTATCTATCGAGATTAGTAAAATTGATGCACGGATCATGCGAAATGTTACTGGAATGCAACAGTTGGAACTTAAGCTTGAACCTGTTTCTGCACATGATTATCAATCAATATTGTTGCCTCTTGTGAACTCATACTTGAGGGCACATTTAGAAGATTTGGCTGAAAAAGATGCCACGAAGAAGTCTGATGCTGCACGAGAAGCATTTTTAGCTGAATTGGCACTGGATTCAAAAAAGGGTATCAGAGGAGGAAATGATAATTCAAGACATGCACATGAGAAGCCGAAGGAAAAGAAAAGGAGCAAGGAGTTTAGGAAAGTCAAGGACTCTAAGGTGGTCAGTGGTCCTGAGCAGGATGTGCTTCATGATGAGGCTGTCGATGGAGATCCCTTTCAAGTTTCATCTGATGGTGATGCTGCAGAGGTGGACATTGCTATTTTTGAGAATGGTGATGCTTTAAGACTACAGGAGGAAGAGTTTAGACGCAAAATTGAGCTGGAAGCAGATGAAAGAAAGCTAGAAGAGACTTTGGAGTATCAAAGACGAATTGAGAATGAGGCTAAACAAAAGCATCTGGCTGAACTACAAAAGAAATCTGCCCAGACAAATCTAGAGAAGAACTTGGCTGTGGCGGTACATGATAATCTCATTGGACTTGTCCCCAATGTTGAGGGTGCTGATGAGTATCTTAAGCCCTCTGTGGTGGATCAATTGGCAGAAAATGATTTGGTTGCCGACTTGTCTAGGAATGGTCCTGCAATGCAAAGCGCTTTTTCAGGTATATCCAATGTAGGAGTTCTGGAGAATAGTTTGCCATCTTCTGACAGGAGGAAGGGGAGGAAAGGTAGACGGCACAAGGTTTCAATCAAACCAGTAGATGGAAATCAGCCTTCACCATCTGATAAGGATAATGTAACCTTTGACAACCAATTGAATGAGCAAGTTAGATATCATGACAATCTCCTAGTAGATAGTGTTAATCCACTTTCCGAAGATAATAGTACAAAGACTTTGAGACGACATGTAGAGGATGATGAGGAAAGATTTCAAGCTGATCTTAAGAAGGCTGTACGCCAGAGCCTTGATGCATTTCAAGAACAGCAGAAATTACCCTTGATTACAAATTCCAGGACACCGTTGATCAGTTATGGTGAAGTAGATAGTAATGGTCTTCCATCAAATGAACTCAATGTTGAAAATGTGGGAGAAGATATATTTGGTACAGGACTTAAGAATGAAGTTGGTGAATATAATTGCTTTCTGAATGTGATTATTCAATCCTTATGGCATTTAAGACGGTTTCGAGAAGAGTTCCTGGGAAGATCTATGACTGAGCATGTTCATGTTGGGGATCCCTGTGTTGTTTGTGCATTATATGAAATATTCGCTGCCTTGAGCATGGCATCTGCAGATGCTAGAAGAGAAGCAGTCGCCCCCACTTCTTTGAGAATAGCTCTGAGCAATCTTTGTCCTGATAGTAATTTCTTCCAAGAGGGCCAGATGAATGACGCCTCTGAAGTGCTGGCAGTCATATTTGATTGCCTACACCAGTCATTGACTCCTAGTTCCAGCGTTTCTGATACAGAATCAGTTGAAAGCAATTGCATGGGGTCTTGGGACTGTGCAAGTGCAACTTGTTTGGTACATTCCATCTTCGGAATGGACATTTTTGAACGAATGAATTGCTATAGTTGTGGCCTGGAATCTAGACATCTGAAGTACACTTCCTTCTTTCACAATATAAATGCTAGTGCCCTTCGAACAATGAAGGTTATGTGTACAGAAAGTTCCTTTGATGAACTTCTGAATGTTGTTGAAATGAATCATCAGCTAGCTTGTGATTTGGATGTTGGTGGTTGTGGAAAGCTCAATTACATTCATCACTTTCTCTCTGCACCGCCACATGTGTTCACAACTGTCTTGGGCTGGCAGAACACTTGTGAGAGTGCTGATGACATCACAGCTACATTAGCTGCTCTAAGTACTGAGATAGATATCAGCGTTCTTTATCGGGGTCTAGATCCAAAGCACACCCATAATTTGGTATCAGTGGTTTGCTATTATGGTCAACACTATCACTGTTTTGCCTACAGTCACGACAAAAAATGCTGGATAATGTATGATGATAGAACTGTTAAGGTAATTGGTGGCTGGCCTGACGTTCTTACCATGTGTGAAAAAGGACACTTGCAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG 4869 41.82 MGRKKKVIDPRSKQSPAARGVAVDVPSLANAVDHSSIPDKASNHNQSRIEPVFVNESDGLSYSSIKLECERALTALRRGNHTKALRLMKELSSRNESSVHSALIHRVQGTICVKVASIIDDMNTKQRHLKNAIESARKAVELSPNSIEFSHFYANLLYEVANDAKEYDEVVQECERALGIENPIDPAKESLQDEKNQKIPTAEARITHVQTELRQLIQKSNIYSISSWMKNLGNGEEKFRLIPIRRVTEDPMEVRLVQARRANEIKKATKTPEERRKEIEVRVAAARLLQQKSETPQMQNEGGKADRTLDSSSGSGTRVGERRKHGNLRKHGSSAERRDWVHSFWNSMSMESKKDLLKIKTSDLKTHFSSSKDASANEVISEALSFYDANKTWKFWACCRCDEKFVDSESHMHHVVQEHMGNLLPKMQSILPQNVDNEWTEMLLNCSWKALDVSAAAKMLTDQRKFKDSELDEDICSQHHSESDDCFKDAWDSSPVKHRYGNSLNECNLYEKVTNNGFKTCNENQGSFVSYSLSNSFPVSDDSERTKLLEKIHAVFELLIRHKYLAASHLNKVIQFTMDELQGLASGSHLLNQGLDQTPLCICFLGASQLRKILKFLQELCQSCGIGRYSDKSTGQIEDSKSDKQPVEVKEKVVLNRDASLLILNECFLSSDIPHPNGQVVATDHMPATAKDVIANGVLSEVDPFLSWIYGGPSSGEQLASWAQSKEEKIQRRMEIFQMLEKEFYHLQSLCERKCEHLNYEEALQSVEDLCLEEGKKRETVTEFIPKSYESVLRRRREELIEAENDVMFIGSRFELDAITNVLKEAEALNVNQFGYEENFASVPPPLCDLESGEDEDWRAKDYLHQVDTCIEVAIQRQKEQLSIEISKIDARIMRNVTGMQQLELKLEPVSAHDYQSILLPLVNSYLRAHLEDLAEKDATKKSDAAREAFLAELALDSKKGIRGGNDNSRHAHEKPKEKKRSKEFRKVKDSKVVSGPEQDVLHDEAVDGDPFQVSSDGDAAEVDIAIFENGDALRLQEEEFRRKIELEADERKLEETLEYQRRIENEAKQKHLAELQKKSAQTNLEKNLAVAVHDNLIGLVPNVEGADEYLKPSVVDQLAENDLVADLSRNGPAMQSAFSGISNVGVLENSLPSSDRRKGRKGRRHKVSIKPVDGNQPSPSDKDNVTFDNQLNEQVRYHDNLLVDSVNPLSEDNSTKTLRRHVEDDEERFQADLKKAVRQSLDAFQEQQKLPLITNSRTPLISYGEVDSNGLPSNELNVENVGEDIFGTGLKNEVGEYNCFLNVIIQSLWHLRRFREEFLGRSMTEHVHVGDPCVVCALYEIFAALSMASADARREAVAPTSLRIALSNLCPDSNFFQEGQMNDASEVLAVIFDCLHQSLTPSSSVSDTESVESNCMGSWDCASATCLVHSIFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCTESSFDELLNVVEMNHQLACDLDVGGCGKLNYIHHFLSAPPHVFTTVLGWQNTCESADDITATLAALSTEIDISVLYRGLDPKHTHNLVSVVCYYGQHYHCFAYSHDKKCWIMYDDRTVKVIGGWPDVLTMCEKGHLQPQVLFFEAVN 1622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5002983 5011514 + Lag0034172.1 Lac3g0644 601066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0644 1622 Gene3D Cysteine proteinases 1275 1620 - -
Lac3g0644 1622 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1289 1621 IPR028889 -
Lac3g0644 1622 MobiDBLite consensus disorder prediction 290 334 - -
Lac3g0644 1622 ProSitePatterns Zinc finger C2H2 type domain signature. 398 419 IPR013087 -
Lac3g0644 1622 Coils Coil 119 139 - -
Lac3g0644 1622 Coils Coil 1047 1086 - -
Lac3g0644 1622 MobiDBLite consensus disorder prediction 963 996 - -
Lac3g0644 1622 PANTHER UBIQUITIN SPECIFIC PROTEINASE 18 1620 IPR052398 -
Lac3g0644 1622 CDD Peptidase_C19 1381 1619 - -
Lac3g0644 1622 Gene3D Tetratricopeptide repeat domain 62 190 IPR011990 GO:0005515(InterPro)
Lac3g0644 1622 MobiDBLite consensus disorder prediction 1 22 - -
Lac3g0644 1622 Pfam Protein of unknown function (DUF627) 72 181 IPR006866 -
Lac3g0644 1622 SUPERFAMILY Cysteine proteinases 1289 1619 IPR038765 -
Lac3g0644 1622 Pfam Protein of unknown function (DUF629) 341 873 IPR006865 -
Lac3g0644 1622 Pfam Ubiquitin carboxyl-terminal hydrolase 1290 1598 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Lac3g0644 1622 MobiDBLite consensus disorder prediction 1147 1186 - -
Lac3g0644 1622 MobiDBLite consensus disorder prediction 961 996 - -
Lac3g0644 1622 MobiDBLite consensus disorder prediction 290 316 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0644 - - - 0.0