Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0654 ATGGATCCTCCACTTGTTAACGAATCATCCTTCTCCGCTGCGAATCCCTCTTCTTACAGCTTGGCGGCGATTTGGCCTTTCGGCGGGGAGCAGGGCGGGAGTGCATTGGGGCTCCGAATGGCTAATTTGGGTCAGAATCTTGGTGGGTTTCCAGAGAGCTCCACGAATCGCGACGGATCAATGGAGGAATCGACAGTGACGGAGCAGAGTGGCGGTGGGAGGAAGAGGAAGGATGTCAGCTCCGAGGATGAATCTTCCAAAATGGTTTCCACTAGTAGTGCTAATCAATTGAGTAACTCAAATGGTAAACGGATGAAGGTAATGGAATCCAGAGATGAAAATGGTGGTATAAAAGCTGAAGTCGAACCTAGCTCAGCAGATGGTAAGAAGCTGGCCGAGCCAAGCCCGAAACCTTCTGAACCTCCAAAAGATTACATCCATGTGAGAGCGAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCAAGAAGAGAGAAGATCAGTGAGAGAATGAAAATTTTGCAGGACTTGGTTCCAGGTTGTAACAAGGTTATTGGAAAAGCACTTGTCCTTGATGAGATAATAAATTATATCCAATCATTGCAACGTCAGGTCGAGTTCCTCTCCATGAAGCTTGAAGCAGTGAATTCCAGGATGAATATAAGCCCTGCCATTGAAGGTTTTAACTTAAAAAATATTGTTAATCAACCATATGATGCAGCTGGAATATTATATGGTTCACAAGCAGCAAGAGAATATACCCAAGGTGCACAACCTGAATGGTTGCATATGCAGATTGGTGGAAGTTTTGAAAGAACATCTTAG 834 45.08 MDPPLVNESSFSAANPSSYSLAAIWPFGGEQGGSALGLRMANLGQNLGGFPESSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSKMVSTSSANQLSNSNGKRMKVMESRDENGGIKAEVEPSSADGKKLAEPSPKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNISPAIEGFNLKNIVNQPYDAAGILYGSQAAREYTQGAQPEWLHMQIGGSFERTS 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5080163 5083322 + Lag0034182.1 Lac3g0654 601076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0654 277 MobiDBLite consensus disorder prediction 69 84 - -
Lac3g0654 277 MobiDBLite consensus disorder prediction 47 68 - -
Lac3g0654 277 SMART finulus 160 210 IPR011598 GO:0046983(InterPro)
Lac3g0654 277 MobiDBLite consensus disorder prediction 105 144 - -
Lac3g0654 277 Pfam Helix-loop-helix DNA-binding domain 158 205 IPR011598 GO:0046983(InterPro)
Lac3g0654 277 FunFam Basic helix-loop-helix transcription factor 151 223 - -
Lac3g0654 277 MobiDBLite consensus disorder prediction 43 144 - -
Lac3g0654 277 Coils Coil 201 221 - -
Lac3g0654 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 204 IPR011598 GO:0046983(InterPro)
Lac3g0654 277 MobiDBLite consensus disorder prediction 85 104 - -
Lac3g0654 277 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 56 238 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lac3g0654 277 CDD bHLH_AtBPE_like 144 226 - -
Lac3g0654 277 Gene3D - 151 226 IPR036638 GO:0046983(InterPro)
Lac3g0654 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 223 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0654 Lac-Chr3:5080163 Lac6g0062 Lac-Chr6:510509 2.40E-68 dispersed
Lac3g0654 Lac-Chr3:5080163 Lac13g0418 Lac-Chr13:2925494 1.10E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23600 PF00010 HLH 2.20E-08 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0654 - - - 0.0