Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0658 ATGGTGTCCGCGTCGACTCGTCAGAAGAACATGCACTCTCTTCTTGTTTCCAATCTCACCAAGCTGACGATACCCTCGTCTTCTTCTTCTTCTTCCTCTCCTCCTCCTCCTTCATCCGCAGCCGCCGTTCATGACTTTGATTTCTCCGACGTATTTGGCCCGACAAATCCGTCTCCGTCATCTTTTCCGGGGGACCCACTGCAGCATCATGAACAACCAGAGGTCATTCATAACAGATCTCACTCGTTTGTGGGTCCTTCTCCCCGGTTAACTCCTCCCACTCCTTCGCTTGCTTTTTTCCGAGAAGTCGATTCACAGAGCGAGGAGGAGGAAGATGACCTGGAAATCTCGACTGGCGATGGAGCTCAAAAGGAGAAGGAGGTGGGTGAAAGTGAGAATGATGGTGGAGAAAATGTACAGGGGAAGATTGGAGTTGGGGATTTTGATATTGTTCGAGTGGTGGGAAAAGGGGCGTTTGGGAAGGTCTTTTTGGTGAGGAAGAAAGGAGATTGTAAAGGGAACGGTCCCAATAATGATGGAATTTATGCTATGAAAGTGATGAGGAGGGATACCATTATAAAGAAGAATCATGTTGATTACATGAAGGCTGAGAGAGATATTCTAACAAAAGTTGCACACCCTTTCATTGTTCAACTCCGCTACTCTTTCCAGACCAAATCAAAACTTTATTTGATTCTTGATTTCATAAATGGGGGACATCTCTTTTACCATTTGTACCGGCAGGGGATCTTCAGTGAGGATCAGGCAAGAGTCTATGCAGCTGAGATTGTATCGGCTGTTTCGCATCTTCACAACTGCGGCATTGTGCATCGGGATCTCAAGCCTGAGAACATTCTCATGGATGCTGATGGCCATGTAGTGCTTACAGATTTTGGACTGGCCAAGGAAATTAATGAATCGAGTCGTTCGAATTCGTTGTGTGGAACAACAGAGTACATGGCTCCAGAAATCTTGCTTTCTAAAGGTCACAACAAAGATGCTGATTGGTGGAGCGTTGGAGTCCTCTTGTATGAGATGCTTAGTGGCCAGCCACCGTTTACACATGCTAATAGAAAGAAGCTTCAGGAAAGAATAATCAAAGAGAAAGTGAAACTTCCACCATACCTGAGCACTGAAGCTCACTCTTTGCTCAGAGGGCTGTTACAGAAGGAGCCTTCTAAAAGGTTAGGTAGTGGACCGAAAGGAGGGGACGAGATAAAAAATCATAAATGGTTTCGACCAGTGAACTGGAAGAAATTGGAATGTAGAGAGCTGCAACCAAAATTCAAGCCGGATGTCAATGGAAATGACTGCACAGCAAATTTTGATAATTGTTGGACAGCAATGCCCCCAGACGACTCGCCAGCTCCAACGCCAACAGAAGGCGGACACTTCCATGGATACAGTTATGTTGCTCCAAACCCTTGGCTTTCATCATCTGGATAG 1446 45.85 MVSASTRQKNMHSLLVSNLTKLTIPSSSSSSSSPPPPSSAAAVHDFDFSDVFGPTNPSPSSFPGDPLQHHEQPEVIHNRSHSFVGPSPRLTPPTPSLAFFREVDSQSEEEEDDLEISTGDGAQKEKEVGESENDGGENVQGKIGVGDFDIVRVVGKGAFGKVFLVRKKGDCKGNGPNNDGIYAMKVMRRDTIIKKNHVDYMKAERDILTKVAHPFIVQLRYSFQTKSKLYLILDFINGGHLFYHLYRQGIFSEDQARVYAAEIVSAVSHLHNCGIVHRDLKPENILMDADGHVVLTDFGLAKEINESSRSNSLCGTTEYMAPEILLSKGHNKDADWWSVGVLLYEMLSGQPPFTHANRKKLQERIIKEKVKLPPYLSTEAHSLLRGLLQKEPSKRLGSGPKGGDEIKNHKWFRPVNWKKLECRELQPKFKPDVNGNDCTANFDNCWTAMPPDDSPAPTPTEGGHFHGYSYVAPNPWLSSSG 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5116600 5118811 + Lag0034186.1 Lac3g0658 601080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0658 481 Pfam Protein kinase domain 150 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0658 481 SMART pkinase_C_6 413 472 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0658 481 Pfam Protein kinase C terminal domain 433 470 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0658 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0658 481 MobiDBLite consensus disorder prediction 117 133 - -
Lac3g0658 481 MobiDBLite consensus disorder prediction 23 38 - -
Lac3g0658 481 SUPERFAMILY Protein kinase-like (PK-like) 145 472 IPR011009 -
Lac3g0658 481 PANTHER RIBOSOMAL PROTEIN S6 KINASE 109 474 - -
Lac3g0658 481 SMART serkin_6 148 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0658 481 Gene3D Phosphorylase Kinase; domain 1 147 454 - -
Lac3g0658 481 ProSiteProfiles AGC-kinase C-terminal domain profile. 413 480 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0658 481 ProSiteProfiles Protein kinase domain profile. 148 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0658 481 MobiDBLite consensus disorder prediction 23 140 - -
Lac3g0658 481 FunFam Non-specific serine/threonine protein kinase 236 431 - -
Lac3g0658 481 Gene3D Transferase(Phosphotransferase) domain 1 236 431 - -
Lac3g0658 481 FunFam Non-specific serine/threonine protein kinase 145 259 - -
Lac3g0658 481 ProSitePatterns Protein kinases ATP-binding region signature. 154 185 IPR017441 GO:0005524(InterPro)
Lac3g0658 481 CDD STKc_AGC 154 412 IPR045270 GO:0004674(InterPro)|GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3312 Lac-Chr10:46909401 Lac3g0658 Lac-Chr3:5116600 1.00E-135 dispersed
Lac13g0648 Lac-Chr13:4886706 Lac3g0658 Lac-Chr3:5116600 3.10E-55 dispersed
Lac3g0658 Lac-Chr3:5116600 Lac6g0317 Lac-Chr6:2595096 1.40E-55 dispersed
Lac3g0658 Lac-Chr3:5116600 Lac12g0426 Lac-Chr12:4741509 2.10E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86066 PF00069 Pkinase 1.40E-71 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0658 K04688 - csv:101214867 857.055