Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0664 ATGGCGACGCTTGGAGAGCTCTTCCGCCGCAACCCCACCGAGGAACTTGCTGGGGTTTCTGATGATTCGAATCAGAGCAGCTCGAGGGAGCTTCACGTTCTTGCTGTTGATGATAGCCTCGTCGATCGCAAGGTTATCGAGCGGTTGCTGAAGATCTCGTCGTGTAAAGTGACTGCTGTTGAGAGTGGGAGAAGTGCTTTGCAATATCTGGGGTTGGATGGTGAAACCAGTTCTGTGCAGTTTAATGGTTTGAAGGTGAATCTCATCATAACAGATTACTCCATGCCTGAAATGACTGGATATGAACTGCTCAAGAAGATCAAGGAATCATCGGCTTTCAGGGAGATTCCTGTTGTGATTATGTCATCAGAGAACATTTTGGCTCGAATAGACAACTGCTTGAAGGAAGGAGCTGAAGAATTCATAGTGAAGCCTGTGAAACTGTCTGATGTGAAAAGATTGAAAGATTTCATTATCAAAGGAGAGAATGAAGGGAAGAAAATTGGTCTCAAGAGGAAGCTCCATCTTGATCATGATCTTCACCCCTTGTCTCCGGGGTCTCCGACACCGTCGGTGGCAGCTTTCGACCATTGTCAAGGATTTATGCAACGATCACCGTCATTGTCACGACCATCGCCAATCACATGTTCATCAAAGAAAGCCAGGTTCCTCAATGGTGACTTATCCACATGA 693 46.32 MATLGELFRRNPTEELAGVSDDSNQSSSRELHVLAVDDSLVDRKVIERLLKISSCKVTAVESGRSALQYLGLDGETSSVQFNGLKVNLIITDYSMPEMTGYELLKKIKESSAFREIPVVIMSSENILARIDNCLKEGAEEFIVKPVKLSDVKRLKDFIIKGENEGKKIGLKRKLHLDHDLHPLSPGSPTPSVAAFDHCQGFMQRSPSLSRPSPITCSSKKARFLNGDLST 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5168454 5169699 - Lag0034192.1 Lac3g0664 601086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0664 230 ProSiteProfiles Response regulatory domain profile. 32 159 IPR001789 GO:0000160(InterPro)
Lac3g0664 230 CDD REC_typeA_ARR 33 154 - -
Lac3g0664 230 Pfam Response regulator receiver domain 33 151 IPR001789 GO:0000160(InterPro)
Lac3g0664 230 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 191 IPR045279 GO:0009736(InterPro)
Lac3g0664 230 SUPERFAMILY CheY-like 30 154 IPR011006 -
Lac3g0664 230 Gene3D - 31 181 - -
Lac3g0664 230 SMART REC_2 31 155 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0664 Lac-Chr3:5168454 Lac8g2104 Lac-Chr8:39471731 1.80E-37 dispersed
Lac13g0242 Lac-Chr13:1723577 Lac3g0664 Lac-Chr3:5168454 5.40E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23602 PF00072 Response_reg 5.50E-21 CL0304 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0664 K14492 - csv:101214143 331.643